Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGCAATGGCAATGCTATGAGTACAGCACAACCACTCATTTCAATATTCAAAGGAGAAGGCTACGAGTTTTGGAGTATTCGTATGAAGACTCTTCTAAAATCTCAAGACTTATGGGACTTAGTAGAACAAGGCTATGCAGATCCTGACGACGAAGGCAAGTTACGGGAGAACAGGAAGAAAGACTCGAAGGCGTTGGTGATTATTCAACAAGCAGTCCATGACAGTATTTTTTCGCGGATTGCCGTAGCAACAACCGTCAAAACAAGCGTGGCTGATTTTGCAAAAGGCATTTCAAGGAGATTCAAGAGTACTTGTGGTTAAATTGCAATCCCTTAGACGAGACTTTGAGACCTTGATGATGAAAAATGGAGAATCAATTGCTAATTTTTTGTCACGGGCAACGACAATTATTAGTCAGATACAAACATACGGCGAGACGATTAAGGATTAGACTATAGTGGAGAAAGTATTGAGAATTTTGACTCCAAAGTTTGATCATGTTGTGGCTACGATAGAAGAATCAAAGAATCTGTCCACTTTCACATTTATTGAATTAATGGAATCTCTTGAAGCACATGAGTCGAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATGTAGTTCCAAAGTATAATGACAGTGATCGTGTGATGACTTGAGGCCAAGAAAGAGAAGGATATCGTGGTCGAGATCGTGGTACCGGAAAAGGATGTAACCAAAATGAAGAACAAAGGCAGTTCAGAGTGCAATCAAGCAACAAAGCTAATATTCAATGCTACCCTTGCAAGAAGTTTGGTCATGTAAAGGTCGACTGTTGGTACAAAAATCACAGCCAATTTTACAGCAGAGAATGAAGCATCTGAGAATAATAGAAAAGGTGAAAATAAGCTTTTTATGACAAACATACCCAGTGATCAAAAGACAGCAGAGGTGTGGTTTATTGATAGCGGTTGTTCGAATCACATGACAAAGTTTAAAGCCTGTATTCAAGGAGCTTAACGAAGGAGAAAAGTTGAAGGTAGAGCTCGGAAATGGCAAGGAGCTACAAGTAGAAGGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTTTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATGGAGAATGGGTATTCTATCTTGTTTGATGATGGTGTGTGCTTGATAAAAAATAAGCAAACAGGACGAGTTTTAGCGAAAGTAAAGATGACCCAAAGCAAAATGTTTCCACTTGAAGTTTCAAATGTGGAAAATTTTGCTCTTACTGCTACTGCAATAAATACAACAAAGAACAACTCGGAGTTATAGCATTAAGGTATGGACATCTTAATATTAAAGGGTTTTCTTTGCTAAATTAAAGAGATATGTTTATTGGGTTACCAAAAATCAGTGCTATTAATATCTGTGAAGGATGTGTGTATGGAAAACAAACTCAAAAATCTTTTTCTATTGGGAAAGCTCGGAGAGCCTCTCGAAGTGTCTCGAGCTAATTCATGCTGATTTGTGCGGGCCAATGCAAACAAAGTCTCTTGGTGGGAGCTTTTATTTCTTGATTTTTATAGATGATTATAGCCGTATGAGTTGGATATATTTTCTAGAAACCAAATCAGAAACATTTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAGAAAACCAGAGTGGCATGTTTATCAAATCTCTTCCAGTGATAGAGGTGGAGAATTTTTGTCCAACAACTTTAACCATTTTTGCAAGGAACACGACATCCATAGAGAGTTGA
mRNA sequence
ATGGGCAGCAATGGCAATGCTATGAGTACAGCACAACCACTCATTTCAATATTCAAAGGAGAAGGCTACGAGTTTTGGAGTATTCGTATGAAGACTCTTCTAAAATCTCAAGACTTATGGGACTTAGTAGAACAAGGCTATGCAGATCCTGACGACGAAGGCAAGTTACGGGAGAACAGGAAGAAAGACTCGAAGGCGTTGGTGATTATTCAACAAGCAGTCCATGACAGTATTTTTTCGCGGATTGCCGTAGCAACAACCGCATTTCAAGGAGATTCAAGAGTACTTGTGGTTAAATTGCAATCCCTTAGACGAGACTTTGAGACCTTGATGATGAAAAATGGAGAATCAATTGCTAATTTTTTGTCACGGGCAACGACAATTATTATGGAGAAAGTATTGAGAATTTTGACTCCAAAGTTTGATCATGTTGTGGCTACGATAGAAGAATCAAAGAATCTGTCCACTTTCACATTTATTGAATTAATGGAATCTCTTGAAGCACATGAGTCGAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATGTAGTTCCAAAGTATAATGACAGTGATCGATATCGTGGTCGAGATCGTGGTACCGGAAAAGGATGTAACCAAAATGAAGAACAAAGGCAGTTCAGAGTGCAATCAAGCAACAAAGCTAATATTCAATGCTACCCTTGCAAGAAGTTTGGTCATGTAAAGGTCGACTGTTGTTTAAAGCCTGTATTCAAGGAGCTTAACGAAGGAGAAAAGTTGAAGGTAGAGCTCGGAAATGGCAAGGAGCTACAAGTAGAAGGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTTTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATGGAGAATGGGTATTCTATCTTGTTTGATGATGAAACCAAATCAGAAACATTTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAGAAAACCAGAGTGGCATGTTTATCAAATCTCTTCCAGTGATAGAGGTGGAGAATTTTTGTCCAACAACTTTAACCATTTTTGCAAGGAACACGACATCCATAGAGAGTTGA
Coding sequence (CDS)
ATGGGCAGCAATGGCAATGCTATGAGTACAGCACAACCACTCATTTCAATATTCAAAGGAGAAGGCTACGAGTTTTGGAGTATTCGTATGAAGACTCTTCTAAAATCTCAAGACTTATGGGACTTAGTAGAACAAGGCTATGCAGATCCTGACGACGAAGGCAAGTTACGGGAGAACAGGAAGAAAGACTCGAAGGCGTTGGTGATTATTCAACAAGCAGTCCATGACAGTATTTTTTCGCGGATTGCCGTAGCAACAACCGCATTTCAAGGAGATTCAAGAGTACTTGTGGTTAAATTGCAATCCCTTAGACGAGACTTTGAGACCTTGATGATGAAAAATGGAGAATCAATTGCTAATTTTTTGTCACGGGCAACGACAATTATTATGGAGAAAGTATTGAGAATTTTGACTCCAAAGTTTGATCATGTTGTGGCTACGATAGAAGAATCAAAGAATCTGTCCACTTTCACATTTATTGAATTAATGGAATCTCTTGAAGCACATGAGTCGAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATGTAGTTCCAAAGTATAATGACAGTGATCGATATCGTGGTCGAGATCGTGGTACCGGAAAAGGATGTAACCAAAATGAAGAACAAAGGCAGTTCAGAGTGCAATCAAGCAACAAAGCTAATATTCAATGCTACCCTTGCAAGAAGTTTGGTCATGTAAAGGTCGACTGTTGTTTAAAGCCTGTATTCAAGGAGCTTAACGAAGGAGAAAAGTTGAAGGTAGAGCTCGGAAATGGCAAGGAGCTACAAGTAGAAGGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTTTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATGGAGAATGGGTATTCTATCTTGTTTGATGATGAAACCAAATCAGAAACATTTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAGAAAACCAGAGTGGCATGTTTATCAAATCTCTTCCAGTGATAGAGGTGGAGAATTTTTGTCCAACAACTTTAACCATTTTTGCAAGGAACACGACATCCATAGAGAGTTGA
Protein sequence
MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENRKKDSKALVIIQQAVHDSIFSRIAVATTAFQGDSRVLVVKLQSLRRDFETLMMKNGESIANFLSRATTIIMEKVLRILTPKFDHVVATIEESKNLSTFTFIELMESLEAHESRINRSMERNEEKAFQVKDVVPKYNDSDRYRGRDRGTGKGCNQNEEQRQFRVQSSNKANIQCYPCKKFGHVKVDCCLKPVFKELNEGEKLKVELGNGKELQVEGKGTVGIETHHGNRIFTNVQYVPDIGYNLLSVGQLMENGYSILFDDETKSETFEKFKHFKAKVENQSGMFIKSLPVIEVENFCPTTLTIFARNTTSIES
Homology
BLAST of Pay0000814 vs. ExPASy TrEMBL
Match:
A0A5D3DWC7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00230 PE=4 SV=1)
HSP 1 Score: 479.9 bits (1234), Expect = 9.3e-132
Identity = 286/450 (63.56%), Postives = 304/450 (67.56%), Query Frame = 0
Query: 1 MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENR 60
M +NGN M TAQPLI IFKGEGYEFWSIRMKTLL SQDLWDLVEQGY DPDDEGKL+ENR
Sbjct: 1 MSNNGNVMGTAQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60
Query: 61 KKDSKALVIIQQAVHDSIFSRIAVATTAFQGDSRVLVVKLQSLRRDFETLMMKNGESIAN 120
+KDSKALVIIQQAVHD++FSRIA ATT RDFETLMMKNGESIA+
Sbjct: 61 EKDSKALVIIQQAVHDNVFSRIAAATT-----------------RDFETLMMKNGESIAD 120
Query: 121 FLSRATTI---------------IMEKVLRILTPKFDHVVATIEESKNLSTFTFIELMES 180
FLSRATTI I+EKVLR LTPKFDHVV IEESK+LSTFTFIELM S
Sbjct: 121 FLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVVAIEESKDLSTFTFIELMGS 180
Query: 181 LEAHESRINRSMERNEEKAFQVKDVVPKYNDSD----------RYRGRDRGTGKGCNQNE 240
L+AHESRIN SME+NEEKAF+VKDVVPKYNDSD YR R RGTGKGCNQNE
Sbjct: 181 LQAHESRINISMEKNEEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGRGTGKGCNQNE 240
Query: 241 EQRQFRVQSSNKANIQCYPCKKFGHVKVDCC----------------------------- 300
EQRQF VQSSNKANIQCY CKKFGHVK DC
Sbjct: 241 EQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNHRANFTEQNEASENNGNGENKLFMTN 300
Query: 301 -----------------------LKPVFKELNEGEKLKVELGNGKELQVEGKGTVGIETH 360
LKPVFKELNEGEKLKVELGNGKELQVEGK T+GIETH
Sbjct: 301 IPSDQKTTEVWFIDSGHLNHMTDLKPVFKELNEGEKLKVELGNGKELQVEGKRTMGIETH 360
Query: 361 HGNRIFTNVQYVPDIGYNLLSVGQLMENGYSILFDDETKSETFEKFKHFKAKVE-NQSGM 373
+GNRI TNVQYVPDIGYNLLSVGQLME+G+SILFDD ++ AKV+ QS M
Sbjct: 361 NGNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQTGRVLAKVKMTQSKM 420
BLAST of Pay0000814 vs. ExPASy TrEMBL
Match:
A0A5A7UQM0 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00340 PE=4 SV=1)
HSP 1 Score: 476.9 bits (1226), Expect = 7.9e-131
Identity = 281/446 (63.00%), Postives = 304/446 (68.16%), Query Frame = 0
Query: 1 MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENR 60
M +NGN M T QPLI IFKGEGYEFWSIRMKTLL SQDLWDLVEQGY DPDDEGKL+ENR
Sbjct: 1 MSNNGNVMGTTQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60
Query: 61 KKDSKALVIIQQAVHDSIFSRIAVATT----------AFQGDSRVLVVKLQSLRRDFETL 120
+KD KALVI+QQAVHD++FSRIA ATT AFQGDSRVLVVKLQSL+RDFETL
Sbjct: 61 EKDPKALVIVQQAVHDNVFSRIAAATTSKQAWLILQKAFQGDSRVLVVKLQSLKRDFETL 120
Query: 121 MMKNGESIANFLSRATTI---------------IMEKVLRILTPKFDHVVATIEESKNLS 180
MMKNGESIA+FLSRATTI I+EKVLR LTPKFDHVVA IEESK+LS
Sbjct: 121 MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVAAIEESKDLS 180
Query: 181 TFTFIELMESLEAHESRINRSMERNEEKAFQVKDVVPKYNDSD----------RYRGRDR 240
TFTFIELM SL+AHESRIN SME+N+EKAF+VKDVVPKYNDSD YR R R
Sbjct: 181 TFTFIELMGSLQAHESRINISMEKNKEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGR 240
Query: 241 GTGKGCNQNEEQRQFRVQSSNKANIQCYPCKKFGHVKVDCC------------------- 300
GTGKGCNQNEEQRQF VQSSNKANIQCY CKKFGHVK DC
Sbjct: 241 GTGKGCNQNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNQRANFTEQNEASENNG 300
Query: 301 ---------------------------------LKPVFKELNEGEKLKVELGNGKELQVE 348
LKPVFKELNEGEKLKVELGN KELQVE
Sbjct: 301 KGENKLFMINIPSDQKTTEVWFIDSGHLNHMTGLKPVFKELNEGEKLKVELGNSKELQVE 360
BLAST of Pay0000814 vs. ExPASy TrEMBL
Match:
A0A5D3DWP2 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00850 PE=4 SV=1)
HSP 1 Score: 467.2 bits (1201), Expect = 6.3e-128
Identity = 283/431 (65.66%), Postives = 296/431 (68.68%), Query Frame = 0
Query: 30 MKTLLKSQDLWDLVEQGYADPDDEGKLRENRKKDSKALVIIQQAVHDSIFSRIAVATT-- 89
+KTLL+SQDLWDLVEQGY DPDDEGKLRENRKKDSKALVIIQQAVHDS+FSRIA ATT
Sbjct: 117 VKTLLRSQDLWDLVEQGYVDPDDEGKLRENRKKDSKALVIIQQAVHDSVFSRIATATTSK 176
Query: 90 --------AFQGDSRVLVVKLQSLRRDFETLMMKNGESIANFLSRATTI----------- 149
AFQGDSRVL+VKLQSLRRDFETLMMKNGESIA+FLSRATTI
Sbjct: 177 QAWLILQKAFQGDSRVLMVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYGETI 236
Query: 150 ----IMEKVLRILTPKFDHVVATIEESKNLSTFTFIELMESLEAHESRINRSMERNEEKA 209
I+EKVLR LTPKFDHVVA IEESKNL TFTFIELM SLEAHESRINRSMERNEEKA
Sbjct: 237 KDQTIVEKVLRSLTPKFDHVVAAIEESKNLFTFTFIELMGSLEAHESRINRSMERNEEKA 296
Query: 210 FQVKDVVPKYNDSDR----------YRGRDRGTGKGCNQNEEQRQFRVQSSNKANIQCYP 269
FQVKD VPKYNDSDR YRGR GT KGCN+NE QRQF VQSSNKANIQCY
Sbjct: 297 FQVKDAVPKYNDSDRVMTRGRGRGGYRGRGHGTEKGCNRNEAQRQFGVQSSNKANIQCYH 356
Query: 270 CKKFGHVKVDC----------------------------------------------C-- 329
CKKFGHVK DC C
Sbjct: 357 CKKFGHVKADCWYKNQRANFAAENEASENNGNCENKLFMTNIPSDQKTAEVWFIDSSCSN 416
Query: 330 ----LKPVFKELNEGEKLKVELGNGKELQVEGKGTVGIETHHGNRIFTNVQYVPDIGYNL 373
LKPVFKELNEGEKLKV+L NGKELQVEGKGTV IETHHGNRI TNVQYVPDIGYNL
Sbjct: 417 HMTGLKPVFKELNEGEKLKVKLRNGKELQVEGKGTVVIETHHGNRILTNVQYVPDIGYNL 476
BLAST of Pay0000814 vs. ExPASy TrEMBL
Match:
A0A5A7TZP7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00180 PE=4 SV=1)
HSP 1 Score: 434.5 bits (1116), Expect = 4.5e-118
Identity = 249/362 (68.78%), Postives = 264/362 (72.93%), Query Frame = 0
Query: 1 MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENR 60
MGSNGN M T QPLI IFKGEGYEFWSI MKTLL+SQDLWDLVEQGY DPDD+GKLREN+
Sbjct: 1 MGSNGNGMGTTQPLIPIFKGEGYEFWSIPMKTLLRSQDLWDLVEQGYVDPDDKGKLRENK 60
Query: 61 KKDSKALVIIQQAVHDSIFSRIAVATTAFQGDSRVLVVKLQSLRRDFETLMMKNGESIAN 120
KKDSKALVIIQQAVHDS+FSRI ATT RDFETLMMKNGESIA+
Sbjct: 61 KKDSKALVIIQQAVHDSVFSRIVAATT-----------------RDFETLMMKNGESIAD 120
Query: 121 FLSRATTI---------------IMEKVLRILTPKFDHVVATIEESKNLSTFTFIELMES 180
FLSRAT I I+EKVL LTPKFDHVV IEESKNLSTFTFIELM S
Sbjct: 121 FLSRATIIISQMQTYGETIKDQTIVEKVLISLTPKFDHVVVAIEESKNLSTFTFIELMGS 180
Query: 181 LEAHESRINRSMERNEEKAFQVKDVVPKYNDSDRYRGRDRGTGKGCNQNEEQRQFRVQSS 240
LEAHESRINRSMERNEEKAFQ D K + + G +N+ +
Sbjct: 181 LEAHESRINRSMERNEEKAFQA-DYWYKNQRVNFAAENEASENNGKGENKLFMTNILSDQ 240
Query: 241 NKANIQCYPCKKFGHVKVDCCLKPVFKELNEGEKLKVELGNGKELQVEGKGTVGIETHHG 300
+ H+ LKPVFKELNEGEKLKVEL NGKELQVEGKGTVGIETHHG
Sbjct: 241 KTGEVWFIDSGCSNHM---TGLKPVFKELNEGEKLKVELENGKELQVEGKGTVGIETHHG 300
Query: 301 NRIFTNVQYVPDIGYNLLSVGQLMENGYSILFDDETKSETFEKFKHFKAKVENQSGMFIK 348
NRI TNVQYVPDIGYNLLSVGQLME+G SILFDDE+KSETFEKFKHFKAKVE QSGMFIK
Sbjct: 301 NRILTNVQYVPDIGYNLLSVGQLMESGLSILFDDESKSETFEKFKHFKAKVEKQSGMFIK 341
BLAST of Pay0000814 vs. ExPASy TrEMBL
Match:
A0A5D3BU79 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001100 PE=4 SV=1)
HSP 1 Score: 425.6 bits (1093), Expect = 2.1e-115
Identity = 249/374 (66.58%), Postives = 264/374 (70.59%), Query Frame = 0
Query: 1 MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENR 60
MGSNGN M T QPLI IFKGEGYEFWSI MKTLL+SQDLWDLVEQGY DPDD+GKLREN+
Sbjct: 1 MGSNGNGMGTTQPLIPIFKGEGYEFWSIPMKTLLRSQDLWDLVEQGYVDPDDKGKLRENK 60
Query: 61 KKDSKALVIIQQAVHDSIFSRIAVATTAFQGDSRVLVVKLQSLRRDFETLMMKNGESIAN 120
KKDSKALVIIQQAVHDS+FSRI ATT RDFETLMMKNGESIA+
Sbjct: 61 KKDSKALVIIQQAVHDSVFSRIVAATT-----------------RDFETLMMKNGESIAD 120
Query: 121 FLSRATTI---------------IMEKVLRILTPKFDHVVATIEESKNLSTFTFIELMES 180
FLSRAT I I+EKVL LTPKFDHVV IEESKNLSTFTFIELM S
Sbjct: 121 FLSRATIIISQMQTYGETIKDQTIVEKVLISLTPKFDHVVVAIEESKNLSTFTFIELMGS 180
Query: 181 LEAHESRINRSMERNEEKAFQVKDVVPKYNDSDRYRGRDRGTGKGCNQNEEQRQFRVQSS 240
LEAHESRINRSMERNEEKAFQ D K + + G +N+ +
Sbjct: 181 LEAHESRINRSMERNEEKAFQA-DYWYKNQRVNFAAENEASENNGKGENKLFMTNILSDQ 240
Query: 241 NKANIQCYPCKKFGHVKVDCCLKPVFKELNEGEKLKVELGNGKELQVEGKGTVGIETHHG 300
+ H+ LKPVFKELNEGEKLKVEL NGKELQVEGKGTVGIETHHG
Sbjct: 241 KTGEVWFIDSGCSNHM---TGLKPVFKELNEGEKLKVELENGKELQVEGKGTVGIETHHG 300
Query: 301 NRIFTNVQYVPDIGYNLLSVGQLMENGYSILFDD------------ETKSETFEKFKHFK 348
NRI TNVQYVPDIGYNLLSVGQLME+G SILFDD E+KSETFEKFKHFK
Sbjct: 301 NRILTNVQYVPDIGYNLLSVGQLMESGLSILFDDDDYRRMSWIYFLESKSETFEKFKHFK 353
BLAST of Pay0000814 vs. NCBI nr
Match:
KAE8650579.1 (hypothetical protein Csa_010963 [Cucumis sativus])
HSP 1 Score: 496.1 bits (1276), Expect = 2.6e-136
Identity = 274/374 (73.26%), Postives = 290/374 (77.54%), Query Frame = 0
Query: 1 MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENR 60
M +NGNAM T QPLI IFKGEGYEFWS+RMKTLL+SQDLWDLVE YADPDDEGKLRE R
Sbjct: 1 MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60
Query: 61 KKDSKALVIIQQAVHDSIFSRIAVATT----------AFQGDSRVLVVKLQSLRRDFETL 120
+KDSKALVIIQQAVHDS FSRI TT AF+GD RVLVVKLQSLR++FETL
Sbjct: 61 RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120
Query: 121 MMKNGESIANFLSRATTI---------------IMEKVLRILTPKFDHVVATIEESKNLS 180
MMKN ESIANFLSRATTI I+EKVLR LT KFD VVA IEESK+LS
Sbjct: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180
Query: 181 TFTFIELMESLEAHESRINRSMERNEEKAFQVKDVVPKYNDSDR----------YRGRDR 240
TFTFIELM SL+AHESRINRSMERNEEKAFQVKDVVPKYN+SDR YRG+ R
Sbjct: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR 240
Query: 241 GTGKGCNQNEEQRQFRVQSSNKANIQCYPCKKFGHVKVDCC------------------- 300
GT KGC QNEE+ QFRVQSSNKANIQCY KKFGHVK DCC
Sbjct: 241 GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADCCDQKTAEVCFIDSGCSNHMT 300
Query: 301 -LKPVFKELNEGEKLKVELGNGKELQVEGKGTVGIETHHGNRIFTNVQYVPDIGYNLLSV 320
LKP+F ELNEGEKLKVELGN KELQVE KGTVGIETHHGNRI TNVQYVPDIGYNLLSV
Sbjct: 301 GLKPIFNELNEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYVPDIGYNLLSV 360
BLAST of Pay0000814 vs. NCBI nr
Match:
TYK28117.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])
HSP 1 Score: 479.9 bits (1234), Expect = 1.9e-131
Identity = 286/450 (63.56%), Postives = 304/450 (67.56%), Query Frame = 0
Query: 1 MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENR 60
M +NGN M TAQPLI IFKGEGYEFWSIRMKTLL SQDLWDLVEQGY DPDDEGKL+ENR
Sbjct: 1 MSNNGNVMGTAQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60
Query: 61 KKDSKALVIIQQAVHDSIFSRIAVATTAFQGDSRVLVVKLQSLRRDFETLMMKNGESIAN 120
+KDSKALVIIQQAVHD++FSRIA ATT RDFETLMMKNGESIA+
Sbjct: 61 EKDSKALVIIQQAVHDNVFSRIAAATT-----------------RDFETLMMKNGESIAD 120
Query: 121 FLSRATTI---------------IMEKVLRILTPKFDHVVATIEESKNLSTFTFIELMES 180
FLSRATTI I+EKVLR LTPKFDHVV IEESK+LSTFTFIELM S
Sbjct: 121 FLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVVAIEESKDLSTFTFIELMGS 180
Query: 181 LEAHESRINRSMERNEEKAFQVKDVVPKYNDSD----------RYRGRDRGTGKGCNQNE 240
L+AHESRIN SME+NEEKAF+VKDVVPKYNDSD YR R RGTGKGCNQNE
Sbjct: 181 LQAHESRINISMEKNEEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGRGTGKGCNQNE 240
Query: 241 EQRQFRVQSSNKANIQCYPCKKFGHVKVDCC----------------------------- 300
EQRQF VQSSNKANIQCY CKKFGHVK DC
Sbjct: 241 EQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNHRANFTEQNEASENNGNGENKLFMTN 300
Query: 301 -----------------------LKPVFKELNEGEKLKVELGNGKELQVEGKGTVGIETH 360
LKPVFKELNEGEKLKVELGNGKELQVEGK T+GIETH
Sbjct: 301 IPSDQKTTEVWFIDSGHLNHMTDLKPVFKELNEGEKLKVELGNGKELQVEGKRTMGIETH 360
Query: 361 HGNRIFTNVQYVPDIGYNLLSVGQLMENGYSILFDDETKSETFEKFKHFKAKVE-NQSGM 373
+GNRI TNVQYVPDIGYNLLSVGQLME+G+SILFDD ++ AKV+ QS M
Sbjct: 361 NGNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQTGRVLAKVKMTQSKM 420
BLAST of Pay0000814 vs. NCBI nr
Match:
KAA0055915.1 (copia protein [Cucumis melo var. makuwa])
HSP 1 Score: 476.9 bits (1226), Expect = 1.6e-130
Identity = 281/446 (63.00%), Postives = 304/446 (68.16%), Query Frame = 0
Query: 1 MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENR 60
M +NGN M T QPLI IFKGEGYEFWSIRMKTLL SQDLWDLVEQGY DPDDEGKL+ENR
Sbjct: 1 MSNNGNVMGTTQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60
Query: 61 KKDSKALVIIQQAVHDSIFSRIAVATT----------AFQGDSRVLVVKLQSLRRDFETL 120
+KD KALVI+QQAVHD++FSRIA ATT AFQGDSRVLVVKLQSL+RDFETL
Sbjct: 61 EKDPKALVIVQQAVHDNVFSRIAAATTSKQAWLILQKAFQGDSRVLVVKLQSLKRDFETL 120
Query: 121 MMKNGESIANFLSRATTI---------------IMEKVLRILTPKFDHVVATIEESKNLS 180
MMKNGESIA+FLSRATTI I+EKVLR LTPKFDHVVA IEESK+LS
Sbjct: 121 MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVAAIEESKDLS 180
Query: 181 TFTFIELMESLEAHESRINRSMERNEEKAFQVKDVVPKYNDSD----------RYRGRDR 240
TFTFIELM SL+AHESRIN SME+N+EKAF+VKDVVPKYNDSD YR R R
Sbjct: 181 TFTFIELMGSLQAHESRINISMEKNKEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGR 240
Query: 241 GTGKGCNQNEEQRQFRVQSSNKANIQCYPCKKFGHVKVDCC------------------- 300
GTGKGCNQNEEQRQF VQSSNKANIQCY CKKFGHVK DC
Sbjct: 241 GTGKGCNQNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNQRANFTEQNEASENNG 300
Query: 301 ---------------------------------LKPVFKELNEGEKLKVELGNGKELQVE 348
LKPVFKELNEGEKLKVELGN KELQVE
Sbjct: 301 KGENKLFMINIPSDQKTTEVWFIDSGHLNHMTGLKPVFKELNEGEKLKVELGNSKELQVE 360
BLAST of Pay0000814 vs. NCBI nr
Match:
TYK27735.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])
HSP 1 Score: 467.2 bits (1201), Expect = 1.3e-127
Identity = 283/431 (65.66%), Postives = 296/431 (68.68%), Query Frame = 0
Query: 30 MKTLLKSQDLWDLVEQGYADPDDEGKLRENRKKDSKALVIIQQAVHDSIFSRIAVATT-- 89
+KTLL+SQDLWDLVEQGY DPDDEGKLRENRKKDSKALVIIQQAVHDS+FSRIA ATT
Sbjct: 117 VKTLLRSQDLWDLVEQGYVDPDDEGKLRENRKKDSKALVIIQQAVHDSVFSRIATATTSK 176
Query: 90 --------AFQGDSRVLVVKLQSLRRDFETLMMKNGESIANFLSRATTI----------- 149
AFQGDSRVL+VKLQSLRRDFETLMMKNGESIA+FLSRATTI
Sbjct: 177 QAWLILQKAFQGDSRVLMVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYGETI 236
Query: 150 ----IMEKVLRILTPKFDHVVATIEESKNLSTFTFIELMESLEAHESRINRSMERNEEKA 209
I+EKVLR LTPKFDHVVA IEESKNL TFTFIELM SLEAHESRINRSMERNEEKA
Sbjct: 237 KDQTIVEKVLRSLTPKFDHVVAAIEESKNLFTFTFIELMGSLEAHESRINRSMERNEEKA 296
Query: 210 FQVKDVVPKYNDSDR----------YRGRDRGTGKGCNQNEEQRQFRVQSSNKANIQCYP 269
FQVKD VPKYNDSDR YRGR GT KGCN+NE QRQF VQSSNKANIQCY
Sbjct: 297 FQVKDAVPKYNDSDRVMTRGRGRGGYRGRGHGTEKGCNRNEAQRQFGVQSSNKANIQCYH 356
Query: 270 CKKFGHVKVDC----------------------------------------------C-- 329
CKKFGHVK DC C
Sbjct: 357 CKKFGHVKADCWYKNQRANFAAENEASENNGNCENKLFMTNIPSDQKTAEVWFIDSSCSN 416
Query: 330 ----LKPVFKELNEGEKLKVELGNGKELQVEGKGTVGIETHHGNRIFTNVQYVPDIGYNL 373
LKPVFKELNEGEKLKV+L NGKELQVEGKGTV IETHHGNRI TNVQYVPDIGYNL
Sbjct: 417 HMTGLKPVFKELNEGEKLKVKLRNGKELQVEGKGTVVIETHHGNRILTNVQYVPDIGYNL 476
BLAST of Pay0000814 vs. NCBI nr
Match:
KAA0046865.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])
HSP 1 Score: 434.5 bits (1116), Expect = 9.3e-118
Identity = 249/362 (68.78%), Postives = 264/362 (72.93%), Query Frame = 0
Query: 1 MGSNGNAMSTAQPLISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGKLRENR 60
MGSNGN M T QPLI IFKGEGYEFWSI MKTLL+SQDLWDLVEQGY DPDD+GKLREN+
Sbjct: 1 MGSNGNGMGTTQPLIPIFKGEGYEFWSIPMKTLLRSQDLWDLVEQGYVDPDDKGKLRENK 60
Query: 61 KKDSKALVIIQQAVHDSIFSRIAVATTAFQGDSRVLVVKLQSLRRDFETLMMKNGESIAN 120
KKDSKALVIIQQAVHDS+FSRI ATT RDFETLMMKNGESIA+
Sbjct: 61 KKDSKALVIIQQAVHDSVFSRIVAATT-----------------RDFETLMMKNGESIAD 120
Query: 121 FLSRATTI---------------IMEKVLRILTPKFDHVVATIEESKNLSTFTFIELMES 180
FLSRAT I I+EKVL LTPKFDHVV IEESKNLSTFTFIELM S
Sbjct: 121 FLSRATIIISQMQTYGETIKDQTIVEKVLISLTPKFDHVVVAIEESKNLSTFTFIELMGS 180
Query: 181 LEAHESRINRSMERNEEKAFQVKDVVPKYNDSDRYRGRDRGTGKGCNQNEEQRQFRVQSS 240
LEAHESRINRSMERNEEKAFQ D K + + G +N+ +
Sbjct: 181 LEAHESRINRSMERNEEKAFQA-DYWYKNQRVNFAAENEASENNGKGENKLFMTNILSDQ 240
Query: 241 NKANIQCYPCKKFGHVKVDCCLKPVFKELNEGEKLKVELGNGKELQVEGKGTVGIETHHG 300
+ H+ LKPVFKELNEGEKLKVEL NGKELQVEGKGTVGIETHHG
Sbjct: 241 KTGEVWFIDSGCSNHM---TGLKPVFKELNEGEKLKVELENGKELQVEGKGTVGIETHHG 300
Query: 301 NRIFTNVQYVPDIGYNLLSVGQLMENGYSILFDDETKSETFEKFKHFKAKVENQSGMFIK 348
NRI TNVQYVPDIGYNLLSVGQLME+G SILFDDE+KSETFEKFKHFKAKVE QSGMFIK
Sbjct: 301 NRILTNVQYVPDIGYNLLSVGQLMESGLSILFDDESKSETFEKFKHFKAKVEKQSGMFIK 341
BLAST of Pay0000814 vs. TAIR 10
Match:
AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 69.3 bits (168), Expect = 7.3e-12
Identity = 30/85 (35.29%), Postives = 53/85 (62.35%), Query Frame = 0
Query: 15 ISIFKGEGYEFWSIRMKTLLKSQDLWDLVEQGYADPDDEGK--------LRENRKKDSKA 74
+ + Y+ WS+RMK +L + D+W++VE+G+ +P++EG LR++RK+D KA
Sbjct: 10 VPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKA 69
Query: 75 LVIIQQAVHDSIFSRIAVATTAFQG 92
L +I Q + + F ++ AT+A G
Sbjct: 70 LCLIYQGLDEDTFEKVVEATSAKDG 94
BLAST of Pay0000814 vs. TAIR 10
Match:
AT3G21000.1 (Gag-Pol-related retrotransposon family protein )
HSP 1 Score: 64.7 bits (156), Expect = 1.8e-10
Identity = 90/365 (24.66%), Postives = 147/365 (40.27%), Query Frame = 0
Query: 23 YEFWSIRMKTLLKSQDLWDLVEQGY-------------ADPDDEGKLRENRKKDSKALVI 82
YE W+ K+ L Q LWD+V G P++ K R+ KD+KAL I
Sbjct: 17 YEIWAPITKSTLIEQGLWDVVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKALQI 76
Query: 83 IQQAVHDSIFSRIAVATTA-------FQGDSRVLV-----VKLQSLRRDFETLMMKNGES 142
+Q ++ DS+F + A++A +G+ + + V ++ L + E L M + ES
Sbjct: 77 LQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLKMVDKES 136
Query: 143 IANFLSRATTI---------------IMEKVLRILTPKFDHVVATIEESKNLSTFTFIEL 202
+++L +A I I + V L+ FD + + +EE ++ T L
Sbjct: 137 GSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKSL 196
Query: 203 MESL--EAHESRINRSMERNEEKAFQVKDVVPKYNDSDRYRGRDRGTGKGCNQNEEQRQF 262
+E HES EE F + + + S+++ G N N+E +F
Sbjct: 197 VEYFYYRVHES-------STEEAIFGLLKDLRLKSKSEKWCGLCYKN----NHNQEDCKF 256
Query: 263 RVQSSNKANIQCYPCKKFGHVKVDCCLKPV-----------------------------F 316
R+ + + +K + VD L+ V F
Sbjct: 257 RIHTDKE--------EKEDEIVVDYRLETVPNLGAKTYDDDIWIIHKMAPINMTPYVKYF 316
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DWC7 | 9.3e-132 | 63.56 | Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| A0A5A7UQM0 | 7.9e-131 | 63.00 | Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00340 ... | [more] |
| A0A5D3DWP2 | 6.3e-128 | 65.66 | Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| A0A5A7TZP7 | 4.5e-118 | 68.78 | Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| A0A5D3BU79 | 2.1e-115 | 66.58 | Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAE8650579.1 | 2.6e-136 | 73.26 | hypothetical protein Csa_010963 [Cucumis sativus] | [more] |
| TYK28117.1 | 1.9e-131 | 63.56 | putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] | [more] |
| KAA0055915.1 | 1.6e-130 | 63.00 | copia protein [Cucumis melo var. makuwa] | [more] |
| TYK27735.1 | 1.3e-127 | 65.66 | putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] | [more] |
| KAA0046865.1 | 9.3e-118 | 68.78 | putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G48720.1 | 7.3e-12 | 35.29 | unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B... | [more] |
| AT3G21000.1 | 1.8e-10 | 24.66 | Gag-Pol-related retrotransposon family protein | [more] |
