Pay0000694 (gene) Melon (Payzawat) v1

Overview


Name	Pay0000694
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty1-copia retrotransposon protein
Location	chr01: 13106075 .. 13106566 (-)
RNA-Seq Expression	Pay0000694
Synteny	Pay0000694

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGACCTGGGAGAAGCAGATGTAATTCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGACTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGGGTGTCTCAACCAGAATATGCAAAGATCATAGGCAGTGTGATGTATTTATTGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTGAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCATCTGTTGAGATATCTTAAAGGGACGATAGATTATTGTCTACACTTCAACAAATTTCCTGCCGTACTAGAAGGATATTGTGATGCAAACTGGGTCACAGACAATGATGAGGTTAACTCCACTAGTGGGTATGTATTTTTACTCAGAAGTGGAGCTATATCTTGA

mRNA sequence

ATGAAAGACCTGGGAGAAGCAGATGTAATTCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGACTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGGGTGTCTCAACCAGAATATGCAAAGATCATAGGCAGTGTGATGTATTTATTGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTGAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCATCTGTTGAGATATCTTAAAGGGACGATAGATTATTGTCTACACTTCAACAAATTTCCTGCCGTACTAGAAGGATATTGTGATGCAAACTGGGTCACAGACAATGATGAGGTTAACTCCACTAGTGGGTATGTATTTTTACTCAGAAGTGGAGCTATATCTTGA

Coding sequence (CDS)

ATGAAAGACCTGGGAGAAGCAGATGTAATTCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGACTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGGGTGTCTCAACCAGAATATGCAAAGATCATAGGCAGTGTGATGTATTTATTGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTGAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCATCTGTTGAGATATCTTAAAGGGACGATAGATTATTGTCTACACTTCAACAAATTTCCTGCCGTACTAGAAGGATATTGTGATGCAAACTGGGTCACAGACAATGATGAGGTTAACTCCACTAGTGGGTATGTATTTTTACTCAGAAGTGGAGCTATATCTTGA

Protein sequence

MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDRVSQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS

Homology

[Close]

BLAST of Pay0000694 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-30
Identity = 73/173 (42.20%), Postives = 103/173 (59.54%), Query Frame = 0


Query: 1    MKDLGEADVILGVKIRKNKTS--LSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKK- 60
            MKDLG A  ILG+KI + +TS  L L Q  Y+E++L++F+  +  PV TP      L K 
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   -------NKGDRVSQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRH 120
                    KG+    P Y+  +GS+MY +  TRPDIA+AV  +SR+  NP + HW+A++ 
Sbjct: 1095 MCPTTVEEKGNMAKVP-YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKW 1154

Query: 121  LLRYLKGTIDYCLHFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
            +LRYL+GT   CL F     +L+GY DA+   D D   S++GY+F    GAIS
Sbjct: 1155 ILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAIS 1206

[Close]

BLAST of Pay0000694 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-24
Identity = 62/165 (37.58%), Postives = 92/165 (55.76%), Query Frame = 0


Query: 1    MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60
            +K+  +    LG++ ++    L L Q  Y   +L + +     PV TP   S  L  + G
Sbjct: 1160 VKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSG 1219

Query: 61   DRVSQP-EYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTI 120
             ++  P EY  I+GS+ YL  +TRPD++YAV+RLS+Y H P   HW+AL+ +LRYL GT 
Sbjct: 1220 TKLPDPTEYRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTP 1279

Query: 121  DYCLHFNKFPAV-LEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
            D+ +   K   + L  Y DA+W  D D+  ST+GY+  L    IS
Sbjct: 1280 DHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPIS 1323

[Close]

BLAST of Pay0000694 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-24
Identity = 63/165 (38.18%), Postives = 92/165 (55.76%), Query Frame = 0


Query: 1    MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60
            +KD  E    LG++ ++  T L L Q  Y+  +L + +     PV TP   S  L    G
Sbjct: 1177 VKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSG 1236

Query: 61   DRVSQP-EYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTI 120
             +++ P EY  I+GS+ YL  +TRPDI+YAV+RLS++ H P   H  AL+ +LRYL GT 
Sbjct: 1237 TKLTDPTEYRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTP 1296

Query: 121  DYCLHFNKFPAV-LEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
            ++ +   K   + L  Y DA+W  D D+  ST+GY+  L    IS
Sbjct: 1297 NHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPIS 1340

[Close]

BLAST of Pay0000694 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 105.9 bits (263), Expect = 4.3e-22
Identity = 59/158 (37.34%), Postives = 86/158 (54.43%), Query Frame = 0


Query: 1    MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60
            M DL E    +G++I   +  + L QS YV+KIL KF+  + + V TP  +  + +    
Sbjct: 1114 MTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNS 1173

Query: 61   DRVSQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120
            D         +IG +MY++  TRPD+  AV+ LSRY+   N   W  L+ +LRYLKGTID
Sbjct: 1174 DEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTID 1233

Query: 121  YCLHFNK---FPAVLEGYCDANWVTDNDEVNSTSGYVF 156
              L F K   F   + GY D++W     +  ST+GY+F
Sbjct: 1234 MKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLF 1271

[Close]

BLAST of Pay0000694 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.5e-17
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 68  YAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNK 127
           Y   +G++MYL+  TRPD+A AV  LS++  +P   HW AL+ +LRYL+ T  Y L F +
Sbjct: 6   YLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTR 65

Query: 128 F-PAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
              A L GY DA+W  D +   STSGY+F L  G +S
Sbjct: 66  AGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVS 102

[Close]

BLAST of Pay0000694 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.0e-87
Identity = 158/163 (96.93%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1    MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60
            MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1057 MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 1116

Query: 61   DRVSQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120
            D VSQPEYAKIIGSVMYL+NYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID
Sbjct: 1117 DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 1176

Query: 121  YCLHFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
            YCLHF KFPAVLEGYCDANWVTDNDEVNSTSGYVFLL  GAIS
Sbjct: 1177 YCLHFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAIS 1219

[Close]

BLAST of Pay0000694 vs. ExPASy TrEMBL
Match: A0A5D3DTE2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00640 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.4e-86
Identity = 156/163 (95.71%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60
           MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKIL KFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILNKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 61  DRVSQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120
           D VSQPEYAKIIGSVMYL+NYTRPDIAYAVS LSRYTHNPNRYHWDALRHLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSILSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 121 YCLHFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
           YCLHFNKFP  LEGYCDANWVTDNDEVNSTSGYVFLLR GAIS
Sbjct: 121 YCLHFNKFPVALEGYCDANWVTDNDEVNSTSGYVFLLRGGAIS 163

[Close]

BLAST of Pay0000694 vs. ExPASy TrEMBL
Match: A0A5A7SZD1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00130 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.4e-86
Identity = 157/163 (96.32%), Postives = 158/163 (96.93%), Query Frame = 0


Query: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60
           MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 61  DRVSQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120
           D VSQPEYAKIIGSVMYL+NYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 121 YCLHFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
           YCLHF KFPAVLEGYCDANWVTDNDEVNSTSGYVFLL   AIS
Sbjct: 121 YCLHFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGEAIS 163

[Close]

BLAST of Pay0000694 vs. ExPASy TrEMBL
Match: A0A5D3C7Z8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001160 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 5.8e-86
Identity = 156/160 (97.50%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 4    LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDRV 63
            LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGD V
Sbjct: 881  LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSV 940

Query: 64   SQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 123
            SQPEYAKIIGSVMYL+NYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL
Sbjct: 941  SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 1000

Query: 124  HFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
            HFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLL  GAIS
Sbjct: 1001 HFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAIS 1040

[Close]

BLAST of Pay0000694 vs. ExPASy TrEMBL
Match: A0A5D3DSQ3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00930 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 2.9e-85
Identity = 155/160 (96.88%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 4    LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDRV 63
            LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGD V
Sbjct: 881  LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSV 940

Query: 64   SQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 123
            SQPEYAKIIGSVMYL+NYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL
Sbjct: 941  SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 1000

Query: 124  HFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
            HF KFPAVLEGYCDANWVTDNDEVNSTSGYVFLL  GAIS
Sbjct: 1001 HFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAIS 1040

[Close]

BLAST of Pay0000694 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 8.3e-87
Identity = 158/163 (96.93%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1    MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60
            MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1057 MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 1116

Query: 61   DRVSQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120
            D VSQPEYAKIIGSVMYL+NYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID
Sbjct: 1117 DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 1176

Query: 121  YCLHFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
            YCLHF KFPAVLEGYCDANWVTDNDEVNSTSGYVFLL  GAIS
Sbjct: 1177 YCLHFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAIS 1219

[Close]

BLAST of Pay0000694 vs. NCBI nr
Match: KAA0036644.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 327.4 bits (838), Expect = 7.0e-86
Identity = 157/163 (96.32%), Postives = 158/163 (96.93%), Query Frame = 0


Query: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60
           MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 61  DRVSQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120
           D VSQPEYAKIIGSVMYL+NYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 121 YCLHFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
           YCLHF KFPAVLEGYCDANWVTDNDEVNSTSGYVFLL   AIS
Sbjct: 121 YCLHFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGEAIS 163

[Close]

BLAST of Pay0000694 vs. NCBI nr
Match: KAA0039122.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK26991.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 327.4 bits (838), Expect = 7.0e-86
Identity = 156/163 (95.71%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60
           MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKIL KFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILNKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 61  DRVSQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120
           D VSQPEYAKIIGSVMYL+NYTRPDIAYAVS LSRYTHNPNRYHWDALRHLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSILSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 121 YCLHFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
           YCLHFNKFP  LEGYCDANWVTDNDEVNSTSGYVFLLR GAIS
Sbjct: 121 YCLHFNKFPVALEGYCDANWVTDNDEVNSTSGYVFLLRGGAIS 163

[Close]

BLAST of Pay0000694 vs. NCBI nr
Match: TYK07981.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.2e-85
Identity = 156/160 (97.50%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 4    LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDRV 63
            LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGD V
Sbjct: 881  LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSV 940

Query: 64   SQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 123
            SQPEYAKIIGSVMYL+NYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL
Sbjct: 941  SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 1000

Query: 124  HFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
            HFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLL  GAIS
Sbjct: 1001 HFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAIS 1040

[Close]

BLAST of Pay0000694 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 324.3 bits (830), Expect = 5.9e-85
Identity = 155/160 (96.88%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 4    LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDRV 63
            LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGD V
Sbjct: 881  LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSV 940

Query: 64   SQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 123
            SQPEYAKIIGSVMYL+NYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL
Sbjct: 941  SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 1000

Query: 124  HFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
            HF KFPAVLEGYCDANWVTDNDEVNSTSGYVFLL  GAIS
Sbjct: 1001 HFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAIS 1040

[Close]

BLAST of Pay0000694 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 8.4e-21
Identity = 53/164 (32.32%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60
           MKDLG     LG++I+ + + L L Q+ Y E+IL      D  P+ TP     +   +  
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTA 92

Query: 61  DRVSQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120
                 ++  I+G++ Y L  TRPDI+YAV+ + +  H P    +D L+ +LRY+KGTI 
Sbjct: 93  KYPDPSDFRSIVGALQY-LTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIF 152

Query: 121 YCLHFNKFPAV-LEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
           + L+ +K   + ++ +CD++W        ST+G+   L    IS
Sbjct: 153 HGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIIS 195

[Close]

BLAST of Pay0000694 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 87.8 bits (216), Expect = 8.7e-18
Identity = 51/165 (30.91%), Postives = 87/165 (52.73%), Query Frame = 0


Query: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNK- 60
           ++DLG     LG++I ++   +++CQ  Y   +L +       P   P D S     +  
Sbjct: 310 LRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG 369

Query: 61  GDRVSQPEYAKIIGSVMYLLNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTI 120
           GD V    Y ++IG +MY L  TR DI++AV++LS+++  P   H  A+  +L Y+KGT+
Sbjct: 370 GDFVDAKAYRRLIGRLMY-LQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTV 429

Query: 121 DYCLHFNKFPAV-LEGYCDANWVTDNDEVNSTSGYVFLLRSGAIS 164
              L ++    + L+ + DA++ +  D   ST+GY   L +  IS
Sbjct: 430 GQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLIS 473

[Close]

BLAST of Pay0000694 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 48.1 bits (113), Expect = 7.6e-06
Identity = 24/80 (30.00%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 79  LNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPAV-LEGYCD 138
           L  TRPD+ +AV+RLS+++         A+  +L Y+KGT+   L ++    + L+ + D
Sbjct: 3   LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFAD 62

Query: 139 ANWVTDNDEVNSTSGYVFLL 158
           ++W +  D   S +G+  L+
Sbjct: 63  SDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Pay0000694 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.5e-30	42.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.1e-24	37.58	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.6e-24	38.18	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	4.3e-22	37.34	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	5.5e-17	45.36	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Pay0000694 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	4.0e-87	96.93	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DTE2	3.4e-86	95.71	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SZD1	3.4e-86	96.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C7Z8	5.8e-86	97.50	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DSQ3	2.9e-85	96.88	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Pay0000694 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	8.3e-87	96.93	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036644.1	7.0e-86	96.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0039122.1	7.0e-86	95.71	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK26991.1 ty1-cop...	[more]
TYK07981.1	1.2e-85	97.50	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	5.9e-85	96.88	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0000694 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	8.4e-21	32.32	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	8.7e-18	30.91	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	7.6e-06	30.00	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 53..156
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 53..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0000694.1	Pay0000694.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding