Pay0000646 (gene) Melon (Payzawat) v1

Overview


Name	Pay0000646
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative
Location	chr07: 28081683 .. 28084107 (+)
RNA-Seq Expression	Pay0000646
Synteny	Pay0000646

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACATATATAAGGGTAAACTTATTTAAATATATTTCGAAATTATTAAAAAAAAAAAGACCTAATTTATAAATTAAAGAAGAACAAAAAATAAAAAGAAAAGAGAGCGAATTCGAAAAGTATAGTTCTTAGCGCGAGTCCATATGTAAACAAACCTCCTTCCGTTGCAATTCGTAACGGTCCTCTCCTCTCCATTTCAAAGCTCAGAACCAAACCAACAAAACAAATTTCCCCTAAATCCCTCCATTTCTCTTCCTTTCCCATTCCCAATCCCAAACCCTAAAATCTTTCTTCACACCATTACAATGCCAACGAGTTCTCCTCACTCCGACCGGACTAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTAATCCTGACTCCGACGCTCTCAGTCGAAGGCCTTATCGCTTGCTTCCTCGTCAGGATCTCATCGATCTCTTCGTCTTGAAGCTCGACGGTTCTGTTTTTGGTGATTCATACTCTATTTTCTTCGTTTTCTTTATCTCACTGTTGTTTCTTGCAAGACGTGAGTAGAGAATCTTGTTTCGATGAAGTTTCTGTCGGTTTTCTGGTGGTTGAGAATCGAGATGGAAAATGAACGATGAAAGGTGGATGGAAACTGTGCTGGAAACTGTTTTAATATAACTTGCTTAAGAGAACAGATTGGAGTATGGTTTCTTGATAACGCTGTAGCGGTAAAATGCGTTTAGAAAAGAGTAGGTAATTAAGGTGTTTGGCGCTTATGGCGACAATGGCTAAGAAAAATGCAACGGGGATATGTTTAAATCTTCCGGTTCTTTAGTTTATGCATTTTTTCTCATGCTTTAACTTGTAGGTGTGGAGATCATGTGAAAATAACTAAATATTTGATTTGATACTACTTGTTTTTTATATTGTGGGTAGTTACAGTGTCAACCCTATTTAAACTGATTTTAGATTGTTTGGCTATCTAGGCGTTCGTGTATCACGTAACAGTACTGTAGCTGATCTTAAACGAGCGGTAGAGGAGGTTTTTGATTCGCCCGGTGGGAGTGAACACTACAAGATTACATGGTATTTTATGACACTTATGGCTAATTTATCACCGAAGATTTTGTTTTTGTTTCTTTTAGGAGTTTTAAAATGCTATTGGGTTTTACACGAATGTCGTTTTGTTTATTTTCATCACATTAAACATTGCTGAATGTCGTATATGTTCTTAGGTCACTTATCTGGGGACATTTCTGCCTATGTTATGAAGGAGAAAAACTCACCGATGACAAGGCATGCATTAGAGGTTATAGTATTAAGGATGGTGATCAGGTATGGGAATATTGCGATGTTCTCTTGCTTGTTCGTTGAGTTAAATGTTAGGTGTTCTCTAGCTTTTAATGTTTTACCCTGTTGTGATAATGCAGCTTCAGTTTATTAGGCATATGTCTATCAACTGTTTATCGATGAAGAAAGACAGGAAGAACCAAACTGTTCCTTGCAAAACAATATTGTTGTGAGTTACTAAGTTGTTCTTTCTTATAGCTGTTTGTTGCATATGTGTCCGTTTCTTGCAAAACAGTATCGTTTCTTAGTTGTTCTCTTTATAGGGTGCACTAGCACATGCATAGACATGCCAATGCATGGGCACATGCCGTTCTCTTTTCTGAACAAAATTGCTCAATTTGATGCCATGTTAAAAAGCAAAAAGTGAATACAAGACATGGATACAACACGAGACTCATATTGAGACCCGTTCTTTCCTAAAATTTTAGGACATGATAGGACAATAACACCTTTATAAAAATATTTATTATTTTTATACATACGTATCTTTTTAGTCTACTCAACAATGTTTTATGTATGTCTAATACATTTGTTGCATGGACATACTAGCCAAACTGAAATGTACATACATCTTTTGAGTCTCATTGTGCAGTAGCAATCTACAATTTATGCAAACTTTCTCAATATTTTATTCTTGCACTGTTCTATTAGACAGTAAACTGATACTTCTCATAAAAGTTTCTCGCCAGAATCAAAAGCTGTTGGAGAGAATCAAGCAGACGGTCAAGACGATATCAAGGATTATCAAGTTCACAGGGACGATTCGAACCAAGAGGAGGTTGCTTCTATGGCTAGAGCTAGATTTCAGCTGTCAAATTTCTTCAAAGGACGGGTATTGTATTCCAGGGTATGGGGTTTCTGTAAGAGTGCATCAGAAGGCAGGAATAGGGCTTCCTCTGCTTTTCGCATTGCTTGAGATTGGAAATGGGCATGGAATAACACAAGCTGCAACTGCATGCAAGGTAATGAACTTAGCTAGGAACTGTAGGATTGAAACTTAAGCATTTGATTTATGAACGAGACGAGTTAGATTGGAGAGTAGGCCTAGGAGAAAGGAAATAGAGGG

mRNA sequence

AAAAACATATATAAGGGTAAACTTATTTAAATATATTTCGAAATTATTAAAAAAAAAAAGACCTAATTTATAAATTAAAGAAGAACAAAAAATAAAAAGAAAAGAGAGCGAATTCGAAAAGTATAGTTCTTAGCGCGAGTCCATATGTAAACAAACCTCCTTCCGTTGCAATTCGTAACGGTCCTCTCCTCTCCATTTCAAAGCTCAGAACCAAACCAACAAAACAAATTTCCCCTAAATCCCTCCATTTCTCTTCCTTTCCCATTCCCAATCCCAAACCCTAAAATCTTTCTTCACACCATTACAATGCCAACGAGTTCTCCTCACTCCGACCGGACTAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTAATCCTGACTCCGACGCTCTCAGTCGAAGGCCTTATCGCTTGCTTCCTCGTCAGGATCTCATCGATCTCTTCGTCTTGAAGCTCGACGGTTCTGTTTTTGGCGTTCGTGTATCACGTAACAGTACTGTAGCTGATCTTAAACGAGCGGTAGAGGAGGTTTTTGATTCGCCCGGTGGGAGTGAACACTACAAGATTACATGGTCACTTATCTGGGGACATTTCTGCCTATGTTATGAAGGAGAAAAACTCACCGATGACAAGGCATGCATTAGAGGTTATAGTATTAAGGATGGTGATCAGCTTCAGTTTATTAGGCATATGTCTATCAACTGTTTATCGATGAAGAAAGACAGGAAGAACCAAACTGTTCCTTGCAAAACAATATTGTTTTTCTCGCCAGAATCAAAAGCTGTTGGAGAGAATCAAGCAGACGGTCAAGACGATATCAAGGATTATCAAGTTCACAGGGACGATTCGAACCAAGAGGAGGTTGCTTCTATGGCTAGAGCTAGATTTCAGCTGTCAAATTTCTTCAAAGGACGGGTATTGTATTCCAGGGTATGGGGTTTCTGTAAGAGTGCATCAGAAGGCAGGAATAGGGCTTCCTCTGCTTTTCGCATTGCTTGAGATTGGAAATGGGCATGGAATAACACAAGCTGCAACTGCATGCAAGGTAATGAACTTAGCTAGGAACTGTAGGATTGAAACTTAAGCATTTGATTTATGAACGAGACGAGTTAGATTGGAGAGTAGGCCTAGGAGAAAGGAAATAGAGGG

Coding sequence (CDS)

ATGCCAACGAGTTCTCCTCACTCCGACCGGACTAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTAATCCTGACTCCGACGCTCTCAGTCGAAGGCCTTATCGCTTGCTTCCTCGTCAGGATCTCATCGATCTCTTCGTCTTGAAGCTCGACGGTTCTGTTTTTGGCGTTCGTGTATCACGTAACAGTACTGTAGCTGATCTTAAACGAGCGGTAGAGGAGGTTTTTGATTCGCCCGGTGGGAGTGAACACTACAAGATTACATGGTCACTTATCTGGGGACATTTCTGCCTATGTTATGAAGGAGAAAAACTCACCGATGACAAGGCATGCATTAGAGGTTATAGTATTAAGGATGGTGATCAGCTTCAGTTTATTAGGCATATGTCTATCAACTGTTTATCGATGAAGAAAGACAGGAAGAACCAAACTGTTCCTTGCAAAACAATATTGTTTTTCTCGCCAGAATCAAAAGCTGTTGGAGAGAATCAAGCAGACGGTCAAGACGATATCAAGGATTATCAAGTTCACAGGGACGATTCGAACCAAGAGGAGGTTGCTTCTATGGCTAGAGCTAGATTTCAGCTGTCAAATTTCTTCAAAGGACGGGTATTGTATTCCAGGGTATGGGGTTTCTGTAAGAGTGCATCAGAAGGCAGGAATAGGGCTTCCTCTGCTTTTCGCATTGCTTGA

Protein sequence

MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFVLKLDGSVFGVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTDDKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVGENQADGQDDIKDYQVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAFRIA

Homology

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BLAST of Pay0000646 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 5.1e-11
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 60  VLKLDGSVFGVRVSRNSTVADLKRAVEEVF----DSPGGSEHYKITWSLIWGHFCLCYEG 119
           V K+DG V  V V +N+TV DLK+A++       +  GG +H  I+WS +W  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLTDDKACIRGYSIKDGDQLQFIRHM 143
           EKLT+D+  +R Y I++ D++ FI+ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

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BLAST of Pay0000646 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.1e-11
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 60  VLKLDGSVFGVRVSRNSTVADLKRAVEEVF----DSPGGSEHYKITWSLIWGHFCLCYEG 119
           V K+DG V  V V +N+TV DLK+A++       +  GG +H  I+WS +W  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLTDDKACIRGYSIKDGDQLQFIRHM 143
           EKLT+D+  +R Y I++ D++ FI+ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Pay0000646 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.0e-10
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 60  VLKLDGSVFGVRVSRNSTVADLKRAVEEVF----DSPGGSEHYKITWSLIWGHFCLCYEG 119
           V K+DG V  V V +++TV DLK+A++       +  GG +H  I+WS +W  + L   G
Sbjct: 45  VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQH--ISWSYVWRTYHLTSAG 104

Query: 120 EKLTDDKACIRGYSIKDGDQLQFIRHM 143
           EKLT+D+  +R Y I++ D++ FI+ +
Sbjct: 105 EKLTEDRKKLRDYGIRNRDEVSFIKKL 129

[Close]

BLAST of Pay0000646 vs. ExPASy TrEMBL
Match: A0A1S3BY00 (uncharacterized protein LOC103494657 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494657 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 9.7e-138
Identity = 239/242 (98.76%), Postives = 241/242 (99.59%), Query Frame = 0


Query: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60
           MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120
           LKLDGSVFGVRVSRNSTVADLKRA+EEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVGENQADG 180
           DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAV ENQADG
Sbjct: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVEENQADG 180

Query: 181 QDDIKDYQVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAF 240
           +DDIKDYQVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAF
Sbjct: 181 RDDIKDYQVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAF 240

Query: 241 RI 243
           RI
Sbjct: 241 RI 242

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BLAST of Pay0000646 vs. ExPASy TrEMBL
Match: A0A0A0KTJ1 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.1e-128
Identity = 221/243 (90.95%), Postives = 231/243 (95.06%), Query Frame = 0


Query: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60
           MPTSSP  DRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60

Query: 61  LKLDGSVFGVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120
           LKLDGSVFG+RVSRNSTVADLKRA+E+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120

Query: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVGENQADG 180
           DK CI+GY IKDGDQLQFIRHMSINCLSMKKDRKNQTVPCK +LF SPESKAV ENQADG
Sbjct: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFLSPESKAVEENQADG 180

Query: 181 QDDIKDYQVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAF 240
           QDD KDYQVHRDDSN+EEVAS+ARA FQL+N FKGRVLYSR+WGFCKSASEGRNRASSAF
Sbjct: 181 QDDFKDYQVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAF 240

Query: 241 RIA 244
           RIA
Sbjct: 241 RIA 243

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BLAST of Pay0000646 vs. ExPASy TrEMBL
Match: A0A6J1G9M5 (uncharacterized protein LOC111452053 OS=Cucurbita moschata OX=3662 GN=LOC111452053 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.5e-93
Identity = 171/234 (73.08%), Postives = 191/234 (81.62%), Query Frame = 0


Query: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFVLKLDGSVF 68
           +R+KI NLWRF RFID RC AP TLD + D DAL RRPYRLLPR +LIDLFVLKLDGSVF
Sbjct: 9   ERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVF 68

Query: 69  GVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTDDKACIRGY 128
           GVRV+RN TVADLK+A+EEVFDSPG SEH KITWSL+WGHFCLCYEGEKL DDKA IR  
Sbjct: 69  GVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVV 128

Query: 129 SIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVGENQADGQDDIKDYQ 188
            IKDGDQLQFIRHMSINCL MK+DRKNQ VPCKT+LF   ESK++  NQ  GQ D  +Y+
Sbjct: 129 GIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLFLPAESKSIEGNQVAGQGDPVNYE 188

Query: 189 VHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAFRI 243
           VH D SNQEE+     A FQL+N F+GRVLYS++WGF +SASEGRNR SS F I
Sbjct: 189 VHEDGSNQEEI---PMAGFQLANIFRGRVLYSKIWGFFRSASEGRNRPSSGFCI 239

[Close]

BLAST of Pay0000646 vs. ExPASy TrEMBL
Match: A0A1S3BYS1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494657 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.5e-93
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60
           MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120
           LKLDGSVFGVRVSRNSTVADLKRA+EEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTIL 165
           DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTIL
Sbjct: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTIL 164

[Close]

BLAST of Pay0000646 vs. ExPASy TrEMBL
Match: A0A6J1DGY1 (uncharacterized protein LOC111020973 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020973 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 3.6e-92
Identity = 168/230 (73.04%), Postives = 189/230 (82.17%), Query Frame = 0


Query: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFVLKLDGSVF 68
           +R+KI NLWRF RFID RC APPTLD + D DALSR PYRLLPRQDLIDLFVLKLDGSVF
Sbjct: 8   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 67

Query: 69  GVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTDDKACIRGY 128
           GVRV+RN TVA+LKRA+EEVF SPGG EH KITWSL+WGHFCLCYEG+ L DDKACIR +
Sbjct: 68  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 127

Query: 129 SIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVGENQADGQDDIKDY- 188
            IKDGDQLQFIRHMSI+CL +K+DRK+QTV C+T+LF  PESK V +NQ  G DD + Y 
Sbjct: 128 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE 187

Query: 189 QVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRAS 238
           +VH D SNQEEV       F L+NFF+GR LYSR+WGF KSASEGRNR S
Sbjct: 188 EVHEDGSNQEEVPIPG---FHLANFFRGRFLYSRIWGFLKSASEGRNRPS 234

[Close]

BLAST of Pay0000646 vs. NCBI nr
Match: XP_008454172.1 (PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo])

HSP 1 Score: 499.2 bits (1284), Expect = 2.0e-137
Identity = 239/242 (98.76%), Postives = 241/242 (99.59%), Query Frame = 0


Query: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60
           MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120
           LKLDGSVFGVRVSRNSTVADLKRA+EEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVGENQADG 180
           DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAV ENQADG
Sbjct: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVEENQADG 180

Query: 181 QDDIKDYQVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAF 240
           +DDIKDYQVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAF
Sbjct: 181 RDDIKDYQVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAF 240

Query: 241 RI 243
           RI
Sbjct: 241 RI 242

[Close]

BLAST of Pay0000646 vs. NCBI nr
Match: XP_004152330.1 (uncharacterized protein LOC101206096 [Cucumis sativus])

HSP 1 Score: 467.6 bits (1202), Expect = 6.5e-128
Identity = 221/243 (90.95%), Postives = 231/243 (95.06%), Query Frame = 0


Query: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60
           MPTSSP  DRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60

Query: 61  LKLDGSVFGVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120
           LKLDGSVFG+RVSRNSTVADLKRA+E+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120

Query: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVGENQADG 180
           DK CI+GY IKDGDQLQFIRHMSINCLSMKKDRKNQTVPCK +LF SPESKAV ENQADG
Sbjct: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFLSPESKAVEENQADG 180

Query: 181 QDDIKDYQVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAF 240
           QDD KDYQVHRDDSN+EEVAS+ARA FQL+N FKGRVLYSR+WGFCKSASEGRNRASSAF
Sbjct: 181 QDDFKDYQVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAF 240

Query: 241 RIA 244
           RIA
Sbjct: 241 RIA 243

[Close]

BLAST of Pay0000646 vs. NCBI nr
Match: XP_038904269.1 (uncharacterized protein LOC120090621 isoform X1 [Benincasa hispida])

HSP 1 Score: 403.7 bits (1036), Expect = 1.1e-108
Identity = 193/243 (79.42%), Postives = 213/243 (87.65%), Query Frame = 0


Query: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFA-PPTLDFNPDSDALSRRPYRLLPRQDLIDLF 60
           MPT S HS+RTKI NLWRF+RF+DYRC A PPTLD + D  ALSRRPYRLLPRQDLIDLF
Sbjct: 1   MPTISTHSERTKIGNLWRFSRFVDYRCLAPPPTLDIDADFRALSRRPYRLLPRQDLIDLF 60

Query: 61  VLKLDGSVFGVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLT 120
           VLKLDGSVFG+RVSRN+TVADLKRA+EEVFDSPGGSEH KITWSLIWGHFCLCYEGEKL 
Sbjct: 61  VLKLDGSVFGIRVSRNATVADLKRAIEEVFDSPGGSEHCKITWSLIWGHFCLCYEGEKLI 120

Query: 121 DDKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVGENQAD 180
           DDK CIR + IKDGDQLQF+RHMSINCL +K+D KNQ+V CKT+L  SPESK+V ENQ  
Sbjct: 121 DDKTCIRVFGIKDGDQLQFLRHMSINCLPVKRDGKNQSVSCKTMLSLSPESKSVEENQPA 180

Query: 181 GQDDIKDYQVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSA 240
           GQDD+++YQVHR  SNQEEV SM RA FQL+NFF+GRVLYSR+WGF KSASEGRNR SS 
Sbjct: 181 GQDDLENYQVHRGGSNQEEVVSMGRAGFQLANFFRGRVLYSRIWGFRKSASEGRNRPSSG 240

Query: 241 FRI 243
           FRI
Sbjct: 241 FRI 243

[Close]

BLAST of Pay0000646 vs. NCBI nr
Match: XP_022948349.1 (uncharacterized protein LOC111452053 [Cucurbita moschata] >KAG7036517.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 351.7 bits (901), Expect = 5.2e-93
Identity = 171/234 (73.08%), Postives = 191/234 (81.62%), Query Frame = 0


Query: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFVLKLDGSVF 68
           +R+KI NLWRF RFID RC AP TLD + D DAL RRPYRLLPR +LIDLFVLKLDGSVF
Sbjct: 9   ERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVF 68

Query: 69  GVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTDDKACIRGY 128
           GVRV+RN TVADLK+A+EEVFDSPG SEH KITWSL+WGHFCLCYEGEKL DDKA IR  
Sbjct: 69  GVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVV 128

Query: 129 SIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVGENQADGQDDIKDYQ 188
            IKDGDQLQFIRHMSINCL MK+DRKNQ VPCKT+LF   ESK++  NQ  GQ D  +Y+
Sbjct: 129 GIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLFLPAESKSIEGNQVAGQGDPVNYE 188

Query: 189 VHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAFRI 243
           VH D SNQEE+     A FQL+N F+GRVLYS++WGF +SASEGRNR SS F I
Sbjct: 189 VHEDGSNQEEI---PMAGFQLANIFRGRVLYSKIWGFFRSASEGRNRPSSGFCI 239

[Close]

BLAST of Pay0000646 vs. NCBI nr
Match: XP_008454174.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cucumis melo])

HSP 1 Score: 351.7 bits (901), Expect = 5.2e-93
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60
           MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120
           LKLDGSVFGVRVSRNSTVADLKRA+EEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTIL 165
           DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTIL
Sbjct: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTIL 164

[Close]

BLAST of Pay0000646 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-28
Identity = 78/201 (38.81%), Postives = 110/201 (54.73%), Query Frame = 0


Query: 44  RRPYRLLPRQDLIDLFVLKLDGSVFGVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWS 103
           R  Y  LP Q  I L V+KL+GS+F V V+++ +VA+LKRAVE+VF       H  I+WS
Sbjct: 41  RSSYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELKRAVEQVFTISPLEGHGMISWS 100

Query: 104 LIWGHFCLCYEGEKLTDDKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTI 163
            +WGHFCLCY  ++L +DK  IR   + DGDQL F+RH+SI+   M K  K+ +  CK  
Sbjct: 101 HVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFVRHLSIDHSPMNKRSKSPS--CKRY 160

Query: 164 LFFSPES-----KAVGENQADGQDDI--KDYQVHRDDSNQEEVASMARARFQLSNFFKGR 223
           L     S     +   +NQ +G DD+  K Y   +D+        +  A  +L N  KG 
Sbjct: 161 LELDVSSIVNEIQIQNQNQ-NGVDDVAEKCYPGAQDE--------LPAAESRLVNLIKGW 220

Query: 224 VLYSRVWGFCKSASEGRNRAS 238
           + Y+  WG  +   E R+  S
Sbjct: 221 LPYAGRWGVSRKGPECRSGPS 230

[Close]

BLAST of Pay0000646 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-21
Identity = 62/154 (40.26%), Postives = 88/154 (57.14%), Query Frame = 0


Query: 40  DALSRR---PYRLLPRQDLIDLFVLKLDGSVFGVRVSRNSTVADLKRAVEEVFDSPGGSE 99
           D L RR    Y  +P ++ I L VLKLDGS FG++V + +TV +LK AVE  F     S 
Sbjct: 20  DGLPRRRSFNYNQMP-EEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISG 79

Query: 100 HYKITWSLIWGHFCLCYEGEKLTDDKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKN- 159
             KI+W  +WG FCL YE ++L ++   +  + IKDGDQL+FIRH+S  C+ M K +   
Sbjct: 80  PGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHKSKT 139

Query: 160 -QTVPCKTILFFS--PESK---AVGENQADGQDD 184
            +    K +  FS  PE++    + E + DG  D
Sbjct: 140 PRVSSFKQLKLFSTTPETRKKNVIREVEEDGVVD 172

[Close]

BLAST of Pay0000646 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 2.5e-21
Identity = 53/114 (46.49%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 47  YRLLPRQDLIDLFVLKLDGSVFGVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIW 106
           Y  LP +  I L VLKLDGS F V V  ++TV DLK A+E  F         KI+WS +W
Sbjct: 11  YDKLPNEP-IRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWSHVW 70

Query: 107 GHFCLCYEGEKLTDDKACIRGYSIKDGDQLQFIRHMSINCL-----SMKKDRKN 156
           GHFCLC+ G+KL  D  CI  Y +KDGD+++F  H+S N +     S K  +KN
Sbjct: 71  GHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRKSKQKN 123

[Close]

BLAST of Pay0000646 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 4.5e-18
Identity = 55/138 (39.86%), Postives = 78/138 (56.52%), Query Frame = 0


Query: 53  QDLIDLFVLKLDGSVFGVRVSRNSTVADLKRAVEEVFDSPGGSEHYKITWSLIWGHFCLC 112
           ++ I L VLKLDGS F   V + +TV +LK AVE  F     S   KI+W  +WG FCL 
Sbjct: 3   EEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPGKISWPHVWGQFCLS 62

Query: 113 YEGEKLTDDKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKN--QTVPCKTILFFS--P 172
           YE ++L ++   +  + IKDGDQL+FIRH+S  C+ M K +    +    K +  FS  P
Sbjct: 63  YEDKRLINESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHKSKTPRVSSFKQLKLFSTTP 122

Query: 173 ESK---AVGENQADGQDD 184
           E++    + E + DG  D
Sbjct: 123 ETRKKNVIREVEEDGVVD 137

The following BLAST results are available for this feature:

BLAST of Pay0000646 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ZBQ4	5.1e-11	39.08	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
Q8VIK1	5.1e-11	39.08	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q9BV90	2.0e-10	37.93	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]

BLAST of Pay0000646 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BY00	9.7e-138	98.76	uncharacterized protein LOC103494657 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KTJ1	3.1e-128	90.95	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470...	[more]
A0A6J1G9M5	2.5e-93	73.08	uncharacterized protein LOC111452053 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A1S3BYS1	2.5e-93	99.39	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucumis mel...	[more]
A0A6J1DGY1	3.6e-92	73.04	uncharacterized protein LOC111020973 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Pay0000646 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454172.1	2.0e-137	98.76	PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo]	[more]
XP_004152330.1	6.5e-128	90.95	uncharacterized protein LOC101206096 [Cucumis sativus]	[more]
XP_038904269.1	1.1e-108	79.42	uncharacterized protein LOC120090621 isoform X1 [Benincasa hispida]	[more]
XP_022948349.1	5.2e-93	73.08	uncharacterized protein LOC111452053 [Cucurbita moschata] >KAG7036517.1 U11/U12 ...	[more]
XP_008454174.1	5.2e-93	99.39	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cu...	[more]

BLAST of Pay0000646 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80060.1	1.2e-28	38.81	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	1.1e-21	40.26	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	2.5e-21	46.49	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	4.5e-18	39.86	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 57..142 e-value: 7.3E-24 score: 83.6
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 56..141 e-value: 1.30606E-32 score: 112.226
None	No IPR available	GENE3D	3.10.20.90		coord: 52..148 e-value: 9.4E-31 score: 107.7
None	No IPR available	PANTHER	PTHR14942:SF9	OS02G0188500 PROTEIN	coord: 22..238
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 22..238
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 53..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0000646.1	Pay0000646.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005689	U12-type spliceosomal complex