Pay0000533 (gene) Melon (Payzawat) v1

Overview
NamePay0000533
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description50S ribosomal protein L16, chloroplastic
LocationContig00288_ERROPOS136135: 23174 .. 24679 (+)
RNA-Seq ExpressionPay0000533
SyntenyPay0000533
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAGTGTGCGACTCGTCAGTTTTTTTTATGTTCGGATTAAAACCAAAAAATAAAGAAGGATAAGCCCATACATAATCTGAACTAATAATTATAAAACTAATAACCAACTCATCGCTTCGCATTATCTGGATCTAAAAAACCAACCAGTCAAGATATGTTATATTGGTCATATCATTGTAGCAACTGAAATCTTTTTTGCATAAAAAAAATCCGATTATGAGTTGTCAAGCAATAAAAGTATGCGGATAAATGGAAGGGTGAAAGAAAGAGAGAAAAAGAATATGAATGATATATCATTCCAATACGTAATATGTAAGGTCTATGGGTCATCTCATAAAAGGTAGTGTAATAAAGCATTAAGACTGATGAATTCATAATTAGATGAATCTGTTCATAGAACAAAAAAGCCAAGAGCCCCGAGACAATAAAGACTGAGAAGATTGACTCAAAAACAAATTTTATTACGGGCTCCATTGTATAATTAAGACCTAACCATTAATCGAGAGGCGATGGGAACGAGGGAACCCGTGAATACATAATATTCTATTGAAAACGAATCCTAATAATTCATTGGGTAGGATGGCGGAAGGAACCCAAGACCAATCCATTTATTATGAGAGGTAGGTTCATGGGCTAACTAACCCGAGAACCAAAACATATATAAAAAGAGTAAATATTCGCCCGCGAACGTTTCCATTTTATTATATTTCTAAATTAGGGTCGATCAAATATAATAATAGATAAAAAAAGGCAAAACAAAATAAAGATTTGTTATAACCTTAATAATAAAAGAAAAAATAACAAAACGAGATTATATTATCTATAATTTTTTAGAAAACTATAATAAAAAAACTTATTCTATTATTCTAGAATCTATAAACAGTTTAGTTTTCTATCAAAAGAAAAGAAGATATACAAATTTCGAATAGATTGATTAAATGAAATATCAAAAATCCCATAATTGAATCTATTATTCAGAAAATATCAGTAAATACATGTATATTTTTTTGAATCGTTTCATTCGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCGGTTCTGTAGTAGAGATGGAATTTAGAAATAACCATCAACTATAACCCCAAAAGAACCAGATTCCGTAAACACCATAGAGGAAGAATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCGAGACAAATCGAAGCCGGACGAAGGGCAATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCGGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAG

mRNA sequence

ATGCTTAGTAGATGGAATTTAGAAATAACCATCAACTATAACCCCAAAAGAACCAGATTCCGTAAACACCATAGAGGAAGAATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCGAGACAAATCGAAGCCGGACGAAGGGCAATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCGGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAG

Coding sequence (CDS)

ATGCTTAGTAGATGGAATTTAGAAATAACCATCAACTATAACCCCAAAAGAACCAGATTCCGTAAACACCATAGAGGAAGAATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCGAGACAAATCGAAGCCGGACGAAGGGCAATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCGGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAG

Protein sequence

MLSRWNLEITINYNPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG
Homology
[Close]
BLAST of Pay0000533 vs. ExPASy Swiss-Prot
Match: Q4VZN1 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 9.1e-72
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 14  NPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 73
           +PKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG
Sbjct: 3   SPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 62

Query: 74  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 133
           KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA
Sbjct: 63  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 122

Query: 134 SKMPIRTQFITSG 147
           SKMPIRTQFITSG
Sbjct: 123 SKMPIRTQFITSG 135

[Close]
BLAST of Pay0000533 vs. ExPASy Swiss-Prot
Match: Q09ME0 (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.9e-69
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0 

Query: 14  NPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 73
           NPKRTRFRK HRGRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGG
Sbjct: 4   NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGG 63

Query: 74  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 133
           KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA
Sbjct: 64  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 123

Query: 134 SKMPIRTQFITSG 147
           SKMPIRTQFI SG
Sbjct: 124 SKMPIRTQFIISG 136

[Close]
BLAST of Pay0000533 vs. ExPASy Swiss-Prot
Match: Q09WY0 (50S ribosomal protein L16, chloroplastic OS=Morus indica OX=248361 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.2e-69
Identity = 125/133 (93.98%), Postives = 130/133 (97.74%), Query Frame = 0 

Query: 14  NPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 73
           +PKRTRFRKHHRGRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGG
Sbjct: 3   SPKRTRFRKHHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGG 62

Query: 74  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 133
           KIWVRIFPDKP+T+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV ENIARKAI+IAA
Sbjct: 63  KIWVRIFPDKPITVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVPENIARKAIAIAA 122

Query: 134 SKMPIRTQFITSG 147
           SKMPIRTQFI SG
Sbjct: 123 SKMPIRTQFIISG 135

[Close]
BLAST of Pay0000533 vs. ExPASy Swiss-Prot
Match: B2LMN1 (50S ribosomal protein L16, chloroplastic OS=Guizotia abyssinica OX=4230 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-68
Identity = 124/136 (91.18%), Postives = 130/136 (95.59%), Query Frame = 0 

Query: 11  INYNPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 70
           +NYNPKRTRFRK HRGRMKGISYRGN+ICFG+YA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 1   MNYNPKRTRFRKQHRGRMKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNAR 60

Query: 71  RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAIS 130
           RGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYEM GV ENIAR+AIS
Sbjct: 61  RGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAIS 120

Query: 131 IAASKMPIRTQFITSG 147
           IAASKMPIR QFI SG
Sbjct: 121 IAASKMPIRAQFIISG 136

[Close]
BLAST of Pay0000533 vs. ExPASy Swiss-Prot
Match: Q1KXS1 (50S ribosomal protein L16, chloroplastic OS=Helianthus annuus OX=4232 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-68
Identity = 124/136 (91.18%), Postives = 130/136 (95.59%), Query Frame = 0 

Query: 11  INYNPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 70
           +NYNPKRTRFRK HRGRMKGISYRGN+ICFG+YA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 1   MNYNPKRTRFRKQHRGRMKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNAR 60

Query: 71  RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAIS 130
           RGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYEM GV ENIAR+AIS
Sbjct: 61  RGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAIS 120

Query: 131 IAASKMPIRTQFITSG 147
           IAASKMPIR QFI SG
Sbjct: 121 IAASKMPIRAQFIISG 136

[Close]
BLAST of Pay0000533 vs. ExPASy TrEMBL
Match: A0A3R5W202 (50S ribosomal protein L16, chloroplastic OS=Zelkova schneideriana OX=172643 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.3e-70
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 9   ITINYNPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRN 68
           ++INYNPKRTRFRKHHRGRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN
Sbjct: 2   LSINYNPKRTRFRKHHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRN 61

Query: 69  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA 128
           ARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA
Sbjct: 62  ARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA 121

Query: 129 ISIAASKMPIRTQFITSG 147
           ISIAASKMPIRTQFI SG
Sbjct: 122 ISIAASKMPIRTQFIISG 139

[Close]
BLAST of Pay0000533 vs. ExPASy TrEMBL
Match: A0A6M4K441 (50S ribosomal protein L16, chloroplastic OS=Herpetospermum pedunculosum OX=386182 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.3e-70
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0 

Query: 9   ITINYNPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRN 68
           +TINYNPKRTRFRKHHRGRMKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRN
Sbjct: 1   MTINYNPKRTRFRKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN 60

Query: 69  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA 128
           ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKA
Sbjct: 61  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKA 120

Query: 129 ISIAASKMPIRTQFITS 146
           ISIAASK+PIRTQFITS
Sbjct: 121 ISIAASKLPIRTQFITS 137

[Close]
BLAST of Pay0000533 vs. ExPASy TrEMBL
Match: A0A0N7H9Y2 (50S ribosomal protein L16, chloroplastic OS=Ficus racemosa OX=100569 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.0e-70
Identity = 132/138 (95.65%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 9   ITINYNPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRN 68
           +TINYNPKRTRFRKHHRGRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN
Sbjct: 1   MTINYNPKRTRFRKHHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRN 60

Query: 69  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA 128
           ARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV ENIARKA
Sbjct: 61  ARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVPENIARKA 120

Query: 129 ISIAASKMPIRTQFITSG 147
           ISIAASKMPIRTQFI SG
Sbjct: 121 ISIAASKMPIRTQFIISG 138

[Close]
BLAST of Pay0000533 vs. ExPASy TrEMBL
Match: A0A410HFB9 (50S ribosomal protein L16, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.2e-70
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 11  INYNPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 70
           +NYNPKRTRFRKHHRGRMKG+SYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 1   MNYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 60

Query: 71  RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAIS 130
           RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKAIS
Sbjct: 61  RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAIS 120

Query: 131 IAASKMPIRTQFITSG 147
           IAASKMPIRTQFITSG
Sbjct: 121 IAASKMPIRTQFITSG 136

[Close]
BLAST of Pay0000533 vs. ExPASy TrEMBL
Match: A0A1X9Q1F7 (50S ribosomal protein L16, chloroplastic (Fragment) OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.9e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 14  NPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 73
           NPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG
Sbjct: 1   NPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 60

Query: 74  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 133
           KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA
Sbjct: 61  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 120

Query: 134 SKMPIRTQFITSG 147
           SKMPIRTQFITSG
Sbjct: 121 SKMPIRTQFITSG 133

[Close]
BLAST of Pay0000533 vs. NCBI nr
Match: QJR52995.1 (50S ribosomal protein L16 [Herpetospermum pedunculosum])

HSP 1 Score: 274.6 bits (701), Expect = 4.8e-70
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0 

Query: 9   ITINYNPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRN 68
           +TINYNPKRTRFRKHHRGRMKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRN
Sbjct: 1   MTINYNPKRTRFRKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN 60

Query: 69  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA 128
           ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKA
Sbjct: 61  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKA 120

Query: 129 ISIAASKMPIRTQFITS 146
           ISIAASK+PIRTQFITS
Sbjct: 121 ISIAASKLPIRTQFITS 137

[Close]
BLAST of Pay0000533 vs. NCBI nr
Match: YP_009560330.1 (50S ribosomal protein L16 [Zelkova schneideriana] >QAA79254.1 50S ribosomal protein L16 [Zelkova schneideriana] >QOE56519.1 50S ribosomal protein L16 [Zelkova serrata] >QWC54725.1 ribosomal protein L16 [Zelkova sinica])

HSP 1 Score: 274.6 bits (701), Expect = 4.8e-70
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 9   ITINYNPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRN 68
           ++INYNPKRTRFRKHHRGRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN
Sbjct: 2   LSINYNPKRTRFRKHHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRN 61

Query: 69  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA 128
           ARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA
Sbjct: 62  ARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA 121

Query: 129 ISIAASKMPIRTQFITSG 147
           ISIAASKMPIRTQFI SG
Sbjct: 122 ISIAASKMPIRTQFIISG 139

[Close]
BLAST of Pay0000533 vs. NCBI nr
Match: YP_009176040.1 (ribosomal protein L16 [Ficus racemosa] >ALI30736.1 ribosomal protein L16 [Ficus racemosa])

HSP 1 Score: 273.9 bits (699), Expect = 8.2e-70
Identity = 132/138 (95.65%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 9   ITINYNPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRN 68
           +TINYNPKRTRFRKHHRGRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN
Sbjct: 1   MTINYNPKRTRFRKHHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRN 60

Query: 69  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA 128
           ARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV ENIARKA
Sbjct: 61  ARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVPENIARKA 120

Query: 129 ISIAASKMPIRTQFITSG 147
           ISIAASKMPIRTQFI SG
Sbjct: 121 ISIAASKMPIRTQFIISG 138

[Close]
BLAST of Pay0000533 vs. NCBI nr
Match: YP_009560873.1 (ribosomal protein L16 [Trichosanthes kirilowii] >QAB33224.1 ribosomal protein L16 [Trichosanthes kirilowii])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 11  INYNPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 70
           +NYNPKRTRFRKHHRGRMKG+SYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 1   MNYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 60

Query: 71  RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAIS 130
           RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKAIS
Sbjct: 61  RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAIS 120

Query: 131 IAASKMPIRTQFITSG 147
           IAASKMPIRTQFITSG
Sbjct: 121 IAASKMPIRTQFITSG 136

[Close]
BLAST of Pay0000533 vs. NCBI nr
Match: ABI97454.1 (ribosomal protein L16, partial [Cucumis sativus] >ABI98783.1 ribosomal protein L16, partial [Cucumis sativus] >ARQ16116.1 ribosomal protein L16, partial [Cucumis sativus] >ARQ16199.1 ribosomal protein L16, partial [Cucumis sativus] >ARQ16282.1 ribosomal protein L16, partial [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 14  NPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 73
           NPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG
Sbjct: 1   NPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 60

Query: 74  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 133
           KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA
Sbjct: 61  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 120

Query: 134 SKMPIRTQFITSG 147
           SKMPIRTQFITSG
Sbjct: 121 SKMPIRTQFITSG 133

[Close]
BLAST of Pay0000533 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 243.8 bits (621), Expect = 8.5e-65
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0 

Query: 14  NPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 73
           +PKRTRFRK HRGR+KGIS RGN ICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGG
Sbjct: 3   SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGG 62

Query: 74  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 133
           KIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPG+ILYEM GV ENIARKAISIAA
Sbjct: 63  KIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAA 122

Query: 134 SKMPIRTQFITS 146
           SKMPI+TQFI S
Sbjct: 123 SKMPIKTQFIIS 134

[Close]
BLAST of Pay0000533 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-46
Identity = 92/132 (69.70%), Postives = 111/132 (84.09%), Query Frame = 0 

Query: 15  PKRTRFRKHHRGRM-KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 74
           P+RT+F+KHHRGR+ KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG 
Sbjct: 832 PRRTKFQKHHRGRINKGVSSQG-YIC-SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGL 891

Query: 75  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 134
            + V IF DKPVT+RP ETRMG GKG+P +WVAVVKPG+I+YEM GV+E +AR+AISIAA
Sbjct: 892 TVRVHIFADKPVTVRPPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKVAREAISIAA 951

Query: 135 SKMPIRTQFITS 146
           SK+P +T+FI S
Sbjct: 952 SKLPAKTKFIIS 961

[Close]
BLAST of Pay0000533 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 110.9 bits (276), Expect = 8.6e-25
Identity = 60/138 (43.48%), Postives = 85/138 (61.59%), Query Frame = 0 

Query: 15  PKRTRFRKHHRGR-MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGR--------RAM 74
           PKRT++ K+ +GR  +G    G  + FGRY  ++ +   ++ R IEA R        RAM
Sbjct: 39  PKRTKYSKYRKGRCSRGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAARRAIIGHFHRAM 98

Query: 75  TRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA 134
           +   RR GKIWVR+F D P+T +PTE RMG GKG+P  W+A V  G+I +EM GV+   A
Sbjct: 99  SGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANA 158

Query: 135 RKAISIAASKMPIRTQFI 144
           R+A ++AA K    T+F+
Sbjct: 159 RQAATLAAHKPCSSTKFV 176

The following BLAST results are available for this feature:
BLAST of Pay0000533 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZN19.1e-7299.2550S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=... [more]
Q09ME01.9e-6996.2450S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=... [more]
Q09WY07.2e-6993.9850S ribosomal protein L16, chloroplastic OS=Morus indica OX=248361 GN=rpl16 PE=3... [more]
B2LMN11.2e-6891.1850S ribosomal protein L16, chloroplastic OS=Guizotia abyssinica OX=4230 GN=rpl16... [more]
Q1KXS11.2e-6891.1850S ribosomal protein L16, chloroplastic OS=Helianthus annuus OX=4232 GN=rpl16 P... [more]
BLAST of Pay0000533 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3R5W2022.3e-7095.6550S ribosomal protein L16, chloroplastic OS=Zelkova schneideriana OX=172643 GN=r... [more]
A0A6M4K4412.3e-7097.0850S ribosomal protein L16, chloroplastic OS=Herpetospermum pedunculosum OX=38618... [more]
A0A0N7H9Y24.0e-7095.6550S ribosomal protein L16, chloroplastic OS=Ficus racemosa OX=100569 GN=rpl16 PE... [more]
A0A410HFB95.2e-7097.0650S ribosomal protein L16, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=r... [more]
A0A1X9Q1F78.9e-70100.0050S ribosomal protein L16, chloroplastic (Fragment) OS=Cucumis sativus OX=3659 G... [more]
BLAST of Pay0000533 vs. NCBI nr
Match NameE-valueIdentityDescription
QJR52995.14.8e-7097.0850S ribosomal protein L16 [Herpetospermum pedunculosum][more]
YP_009560330.14.8e-7095.6550S ribosomal protein L16 [Zelkova schneideriana] >QAA79254.1 50S ribosomal prot... [more]
YP_009176040.18.2e-7095.65ribosomal protein L16 [Ficus racemosa] >ALI30736.1 ribosomal protein L16 [Ficus ... [more]
YP_009560873.11.1e-6997.06ribosomal protein L16 [Trichosanthes kirilowii] >QAB33224.1 ribosomal protein L1... [more]
ABI97454.11.8e-69100.00ribosomal protein L16, partial [Cucumis sativus] >ABI98783.1 ribosomal protein L... [more]
BLAST of Pay0000533 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00790.18.5e-6588.64ribosomal protein L16 [more]
AT2G28830.11.8e-4669.70PLANT U-BOX 12 [more]
ATMG00080.18.6e-2543.48ribosomal protein L16 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000114Ribosomal protein L16PRINTSPR00060RIBOSOMALL16coord: 99..128
score: 58.87
coord: 53..64
score: 71.5
coord: 69..98
score: 67.87
coord: 35..47
score: 47.69
IPR000114Ribosomal protein L16TIGRFAMTIGR01164TIGR01164coord: 13..138
e-value: 1.1E-60
score: 201.3
IPR000114Ribosomal protein L16PANTHERPTHR1222050S/60S RIBOSOMAL PROTEIN L16coord: 9..144
IPR000114Ribosomal protein L16HAMAPMF_01342Ribosomal_L16coord: 12..145
score: 38.797359
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 11..146
e-value: 5.8E-64
score: 217.4
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 13..145
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 15..143
e-value: 1.5E-47
score: 160.9
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 34..143
e-value: 1.19149E-51
score: 158.039
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00586RIBOSOMAL_L16_1coord: 70..81
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00701RIBOSOMAL_L16_2coord: 93..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0000533.1Pay0000533.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome