Pay0000344 (gene) Melon (Payzawat) v1

Overview


Name	Pay0000344
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA-directed RNA polymerase III subunit RPC9
Location	chr05: 8071934 .. 8074050 (+)
RNA-Seq Expression	Pay0000344
Synteny	Pay0000344

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGTAAACACTTTCCGTGGGAATTTTTCGGTAATTGACGATTTCGGATCGACGAGGGTTTTCTCGCCGCCGTCGTGGAGTTCTTGATTCCGGCCAAATCTTAAAGCTTCTTCTCCATGAAAATGTCAGTTCTGAGTCCTCATTCTTCCTGTTATTCGGTTCAATATTCTTCAAATTATTTCATTCCACGATTTCTGTTAGAAATCGATGTCAAATTACTCTCGCTAACAATGTAGTTGGAAGTATTGCTTACAGATTAGAGGCCAACGCAGGCCCTCTTACGAATTTTGAGGTGCTCGACTTTTTAAGATCAAAAGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAAGTGTTACCATCTGAATACAAGGTTATATATTCCCCTTCTTTTGTGCTGGATTACGGTTGATGTTGCAGGTTTTCATTGATTTTTTTTTTAAAAGGTTTTTGATTATTTGAATCGAACTCCTGCTTGTAATCAAACGAGAGAAGCCGTCATTGCTTTTGTTGAGAAGTCCAAAGAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAATTTGCGGCCTATTACCCCGGTTGAGTTATTTCCGGTAATTTCCCCCTTCCATGACAGTTCACAGTAGTTCTTCCCTGAATTTTTAAAATTAATATTATGATATATCTCCGTTTTAAATCCATCTTATTTCTTTTCATTGATGCCTTAGTCTTTGTGTTCGAAGGTAAAGAAACTGTGAATGCCTTAGAAAGTTTGGTGGACAGAGGAAATCCATAACATTTCAGCTATTTTAGAAATATGTGTTGGAAGAGAATTACGTAGTCTTTGAAGCCTTTCATTTTTTCTGTTGACGATACAAAAAGCTTTAGATTCTCTGGCTATGAACCACATTTGTCTGATTGTTAAGAACTTCATGGAGTAGGTGTCAGAAATTGTAGTTAAATTCAACTATAGTCATCTTCATCAGTTAATCTGTAGTTCTGTAAAGACTGACTTGGGGGTAGTCGGAAGTATTCCTAAATAGCATTCAGCTTTCTGGACAGAAGTTCTACTCGTGGGTTAAGTTGCTTCAGAAATAGTACTGTGAAAGTCTTTTTTTTTTTCCTTTCCAAAACGATGGAGCCTCGTGTATTCTGCAAAATATATAACTTAACTTTTGCAAGCTGCCCAAAATTTATACTTGAAAATATTTCTGTAAATAAAAATAAAGAGCTCTTTCCGCCGTACCTCAGAGGTACCTGTAGCACTTCATGTAATTTACTTCAAAGACGTTTTTTTGGTTCTTAAGTTTTCTGCTAGAGCCTTGAACTTAAGAGTTAAGACTTAGAGATACCTCCCAAACATTCCATAACTCATGTGATCTAATCTTGGACGATTCTTAGGAGGCAAAGTTGTTTTTCAAATCCGCTTCCAAACAAATTCTTGTCGGTGGTTTTACCATGGTCCCTTTTCTATGTTGGGAACTTGGGGGACGCTTTGTTAGGAATTCTTCACATAAGAAGTTTTTGGTCGAAGGAAATGAAAATATTAATTTGGATGAATGAAATGTCGATTAATTTGGAGTCTATTACTTTTGTTTCTAGATTATAGAGAATTGTGATGTTCGTATGGGAGAAGAAGCAACTGAAAGAATGGAAGAGATGGGGTCGATGGTGGAACACGTATTCCCTACACCTCAAATTCAGCCAACGCTTGAAGCAACTCCAAATGAAGGTAACGAGGCCGAAACCATGGAAGAGCAAGAAGGAGCAGGGGATGCTGTTGAAGAACCCATCCAAACCACTTGAACCCAGTTAGAGAATTAAGTGAATGTTGGTAGATATAAGATTAAATGAGCTGCCTGTGCTTGATTTCCCTCTCAAGCCTTAACTCAACTATTCATAATGTGCGTGTAGACATGGGTTTCAGGTGAAAGATGAAACTGAGAAGGACAGTTCCCATATATAGAATGTGAAATTAAAGTCAAAGAAAGCTTTTGAGTGCTAAACAATGAAAATGGTTTGGCTTCTTTTCATCACTATTCTTCTATTTGTTAAATATACCCTAATACTTTAGACATGGAAGAAGAATCCGAGATTTTCGTTTCCCTAGGTTATTCCCATCTCCTCAAAGC

mRNA sequence

AGGGTAAACACTTTCCGTGGGAATTTTTCGGTAATTGACGATTTCGGATCGACGAGGGTTTTCTCGCCGCCGTCGTGGAGTTCTTGATTCCGGCCAAATCTTAAAGCTTCTTCTCCATGAAAATATTAGAGGCCAACGCAGGCCCTCTTACGAATTTTGAGGTGCTCGACTTTTTAAGATCAAAAGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAAGTGTTACCATCTGAATACAAGGTTTTTGATTATTTGAATCGAACTCCTGCTTGTAATCAAACGAGAGAAGCCGTCATTGCTTTTGTTGAGAAGTCCAAAGAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAATTTGCGGCCTATTACCCCGGTTGAGTTATTTCCGATTATAGAGAATTGTGATGTTCGTATGGGAGAAGAAGCAACTGAAAGAATGGAAGAGATGGGGTCGATGGTGGAACACGTATTCCCTACACCTCAAATTCAGCCAACGCTTGAAGCAACTCCAAATGAAGGTAACGAGGCCGAAACCATGGAAGAGCAAGAAGGAGCAGGGGATGCTGTTGAAGAACCCATCCAAACCACTTGAACCCAGTTAGAGAATTAAGTGAATGTTGGTAGATATAAGATTAAATGAGCTGCCTGTGCTTGATTTCCCTCTCAAGCCTTAACTCAACTATTCATAATGTGCGTGTAGACATGGGTTTCAGGTGAAAGATGAAACTGAGAAGGACAGTTCCCATATATAGAATGTGAAATTAAAGTCAAAGAAAGCTTTTGAGTGCTAAACAATGAAAATGGTTTGGCTTCTTTTCATCACTATTCTTCTATTTGTTAAATATACCCTAATACTTTAGACATGGAAGAAGAATCCGAGATTTTCGTTTCCCTAGGTTATTCCCATCTCCTCAAAGC

Coding sequence (CDS)

ATGAAAATATTAGAGGCCAACGCAGGCCCTCTTACGAATTTTGAGGTGCTCGACTTTTTAAGATCAAAAGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAAGTGTTACCATCTGAATACAAGGTTTTTGATTATTTGAATCGAACTCCTGCTTGTAATCAAACGAGAGAAGCCGTCATTGCTTTTGTTGAGAAGTCCAAAGAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAATTTGCGGCCTATTACCCCGGTTGAGTTATTTCCGATTATAGAGAATTGTGATGTTCGTATGGGAGAAGAAGCAACTGAAAGAATGGAAGAGATGGGGTCGATGGTGGAACACGTATTCCCTACACCTCAAATTCAGCCAACGCTTGAAGCAACTCCAAATGAAGGTAACGAGGCCGAAACCATGGAAGAGCAAGAAGGAGCAGGGGATGCTGTTGAAGAACCCATCCAAACCACTTGA

Protein sequence

MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAVIAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHVFPTPQIQPTLEATPNEGNEAETMEEQEGAGDAVEEPIQTT

Homology

[Close]

BLAST of Pay0000344 vs. ExPASy Swiss-Prot
Match: Q60482 (DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus OX=10141 GN=CRCP PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-10
Identity = 48/149 (32.21%), Postives = 77/149 (51.68%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPS---------EYKVFDYLNRTP 60
           M++ +AN+  L+N+EV   L      KD  R   K+  S          Y+   YL++TP
Sbjct: 1   MEVKDANSALLSNYEVFQLLTD---LKDQRRESGKMKHSAGQQNLNTITYETLKYLSKTP 60

Query: 61  ACNQTREAVIAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERME 120
             +Q+ E V  F+   K + L KAE L ++N RP+T VE+  ++E  + R  EE  E++E
Sbjct: 61  CRHQSPEIVREFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEETEERFTEE--EQIE 120

Query: 121 EMGSMVEHVFPT-PQIQ--PTLEATPNEG 138
            +   V H+ P  P+++   + EA   EG
Sbjct: 121 ALLHTVTHILPAEPEVEQMASTEAMEEEG 144

[Close]

BLAST of Pay0000344 vs. ExPASy Swiss-Prot
Match: Q8VHM6 (DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus OX=10116 GN=Crcp PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-08
Identity = 46/155 (29.68%), Postives = 77/155 (49.68%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP  N
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCKN 60

Query: 61  QTREAVIAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMG 120
           Q+   V  F+   K + L KAE L ++N RP+T VE+  ++E  + R+ E   E++E + 
Sbjct: 61  QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTE---EQIEALL 120

Query: 121 SMVEHVFPTPQIQPTLEATPNEGNEAETMEEQEGA 150
             V  + P     P  E + +  N+A  MEE+E A
Sbjct: 121 HTVTSILPA---GPEDEQSKSTSNDA-AMEEEEPA 148

[Close]

BLAST of Pay0000344 vs. ExPASy Swiss-Prot
Match: O35427 (DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus OX=10090 GN=Crcp PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-08
Identity = 44/155 (28.39%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP  N
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCRN 60

Query: 61  QTREAVIAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMG 120
           Q+   V  F+   K + L KAE L ++N RP+T VE+  ++E  + R+ E   E++E + 
Sbjct: 61  QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTE---EQIEALL 120

Query: 121 SMVEHVFPTPQIQPTLEATPNEGNEAETMEEQEGA 150
             V  + P        ++T N+      MEE+E A
Sbjct: 121 HTVTSILPAGPEDEQSKSTSND----VAMEEEEPA 148

[Close]

BLAST of Pay0000344 vs. ExPASy Swiss-Prot
Match: A0JN61 (DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus OX=9913 GN=CRCP PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.8e-08
Identity = 43/155 (27.74%), Postives = 76/155 (49.03%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP  +
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCKH 60

Query: 61  QTREAVIAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMG 120
           Q+ E V  F+   K + L KAE L ++N RP+T VE+  ++E  + R+ E   E++E + 
Sbjct: 61  QSPEIVREFLTAMKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTE---EQIEALL 120

Query: 121 SMVEHVFPTPQIQPTLEATPNEGNEAETMEEQEGA 150
             V  + P     P  E   N  ++   M+E++ A
Sbjct: 121 HTVTSILPA---GPEAEQQQNASDDV-AMDEEDPA 148

[Close]

BLAST of Pay0000344 vs. ExPASy Swiss-Prot
Match: O75575 (DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens OX=9606 GN=CRCP PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 43/155 (27.74%), Postives = 76/155 (49.03%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACN 60
           M++ +AN+  L+N+EV   L      R +      +     +    Y+   Y+++TP  +
Sbjct: 1   MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60

Query: 61  QTREAVIAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMG 120
           Q+ E V  F+   K + L KAE L ++N RP+T VE+  ++E  + R+ E   E++E + 
Sbjct: 61  QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTE---EQIEALL 120

Query: 121 SMVEHVFPTPQIQPTLEATPNEGNEAETMEEQEGA 150
             V  + P    +P  E   N  N    M+E++ A
Sbjct: 121 HTVTSILPA---EPEAEQKKNT-NSNVAMDEEDPA 148

[Close]

BLAST of Pay0000344 vs. ExPASy TrEMBL
Match: A0A5A7UV88 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001320 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.4e-81
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLN+TPACNQTREAV
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120
           IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120

Query: 121 FPTPQIQPTLEATPNEGNEAETMEEQEGAGDAVEEPIQTT 161
           FPTPQIQPT EATPNEGNEAETMEEQEGAGDAVEEPIQTT
Sbjct: 121 FPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]

BLAST of Pay0000344 vs. ExPASy TrEMBL
Match: A0A1S3BLS4 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo OX=3656 GN=LOC103491231 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.4e-81
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLN+TPACNQTREAV
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120
           IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120

Query: 121 FPTPQIQPTLEATPNEGNEAETMEEQEGAGDAVEEPIQTT 161
           FPTPQIQPT EATPNEGNEAETMEEQEGAGDAVEEPIQTT
Sbjct: 121 FPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]

BLAST of Pay0000344 vs. ExPASy TrEMBL
Match: A0A0A0LIC1 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis sativus OX=3659 GN=Csa_2G222080 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.3e-71
Identity = 140/160 (87.50%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLN+T ACNQTREA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60

Query: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120
           I F EKSKEYDLAKAEILNIINLRP TPVELFP+IENCD RMGE ATERMEE+G MVEHV
Sbjct: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120

Query: 121 FPTPQIQPTLEATPNEGNEAETMEEQEGAGDAVEEPIQTT 161
           FPTPQ +PT E TP EGNEAE ME QEGAGDA EEP+QTT
Sbjct: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 160

[Close]

BLAST of Pay0000344 vs. ExPASy TrEMBL
Match: A0A6J1H2X6 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LOC111459926 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.9e-58
Identity = 120/160 (75.00%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLN+T ACNQTREA+
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120
           I FV+KSK+YDLAKAE+LNI+NLRPITPVE+FPIIE+ DVRMG++    ++E+  MVE V
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDG---IQELTEMVEQV 120

Query: 121 FPTPQIQPTLEATPNEGNEAETMEEQEGAGDAVEEPIQTT 161
           FPTPQ +PT EA P EG EAETM EQE   DA +EP++TT
Sbjct: 121 FPTPQTEPTSEAVPMEGKEAETMAEQEEIVDAGQEPMETT 157

[Close]

BLAST of Pay0000344 vs. ExPASy TrEMBL
Match: A0A6J1L324 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC111499396 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.5e-57
Identity = 118/160 (73.75%), Postives = 136/160 (85.00%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLN+T ACNQTREA+
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120
           I FV+KSK+YDLAKAE+LNI+NLRPITPVE+FPIIE+ DVRMG++    ++E+  MVE V
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDG---IQELTEMVEQV 120

Query: 121 FPTPQIQPTLEATPNEGNEAETMEEQEGAGDAVEEPIQTT 161
           FPTPQ +PT E  P EG EAETM EQ    DA +EP++TT
Sbjct: 121 FPTPQTEPTSEVAPMEGKEAETMAEQVEIVDAGQEPMETT 157

[Close]

BLAST of Pay0000344 vs. NCBI nr
Match: XP_008449317.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo] >KAA0057449.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo var. makuwa] >TYK30148.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo var. makuwa])

HSP 1 Score: 312.0 bits (798), Expect = 3.0e-81
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLN+TPACNQTREAV
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120
           IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120

Query: 121 FPTPQIQPTLEATPNEGNEAETMEEQEGAGDAVEEPIQTT 161
           FPTPQIQPT EATPNEGNEAETMEEQEGAGDAVEEPIQTT
Sbjct: 121 FPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]

BLAST of Pay0000344 vs. NCBI nr
Match: XP_004145392.1 (DNA-directed RNA polymerase III subunit rpc9 [Cucumis sativus] >XP_031736825.1 DNA-directed RNA polymerase III subunit rpc9 [Cucumis sativus] >KGN61665.1 hypothetical protein Csa_006033 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 4.8e-71
Identity = 140/160 (87.50%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLN+T ACNQTREA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60

Query: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120
           I F EKSKEYDLAKAEILNIINLRP TPVELFP+IENCD RMGE ATERMEE+G MVEHV
Sbjct: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120

Query: 121 FPTPQIQPTLEATPNEGNEAETMEEQEGAGDAVEEPIQTT 161
           FPTPQ +PT E TP EGNEAE ME QEGAGDA EEP+QTT
Sbjct: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 160

[Close]

BLAST of Pay0000344 vs. NCBI nr
Match: XP_038875324.1 (uncharacterized protein LOC120067805 [Benincasa hispida])

HSP 1 Score: 246.1 bits (627), Expect = 2.0e-61
Identity = 123/162 (75.93%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLN+TPACNQ+REA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60

Query: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATE--RMEEMGSMVE 120
           + FVE+SKEYDLAKAEILNIIN RPI PVELFPIIE+C+ RMG++  +  RM+E+ +MVE
Sbjct: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120

Query: 121 HVFPTPQIQPTLEATPNEGNEAETMEEQEGAGDAVEEPIQTT 161
            VFPTPQ +PT E  P EG EAETMEEQE AGD  +EP++ T
Sbjct: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 162

[Close]

BLAST of Pay0000344 vs. NCBI nr
Match: XP_023548749.1 (uncharacterized protein LOC111807313 [Cucurbita pepo subsp. pepo] >KAG6574960.1 DNA-directed RNA polymerase III subunit RPC9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013528.1 DNA-directed RNA polymerase III subunit RPC9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234.6 bits (597), Expect = 6.1e-58
Identity = 120/160 (75.00%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLN+T ACNQTREA+
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120
           I FV+KSK+YDLAKAE+LNI+NLRPITPVE+FPIIE+ DVRMG++    ++E+  MVE V
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDG---IQELTEMVEQV 120

Query: 121 FPTPQIQPTLEATPNEGNEAETMEEQEGAGDAVEEPIQTT 161
           FPTPQ +PT EA P EG EAETM EQE   DA +EP++TT
Sbjct: 121 FPTPQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157

[Close]

BLAST of Pay0000344 vs. NCBI nr
Match: XP_022958741.1 (uncharacterized protein LOC111459926 [Cucurbita moschata])

HSP 1 Score: 234.6 bits (597), Expect = 6.1e-58
Identity = 120/160 (75.00%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLN+T ACNQTREA+
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120
           I FV+KSK+YDLAKAE+LNI+NLRPITPVE+FPIIE+ DVRMG++    ++E+  MVE V
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDG---IQELTEMVEQV 120

Query: 121 FPTPQIQPTLEATPNEGNEAETMEEQEGAGDAVEEPIQTT 161
           FPTPQ +PT EA P EG EAETM EQE   DA +EP++TT
Sbjct: 121 FPTPQTEPTSEAVPMEGKEAETMAEQEEIVDAGQEPMETT 157

[Close]

BLAST of Pay0000344 vs. TAIR 10
Match: AT5G62950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-31
Identity = 77/142 (54.23%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
           MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKV+DYL  T A  QTRE++
Sbjct: 1   MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120
             F +K K++ LAKAEILNIINLRP + VEL PIIEN D R  E  T+ + E+   +   
Sbjct: 61  NKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDR--EIDTDGILELVKDLLPP 120

Query: 121 FPTPQIQPTLEATPNEGNEAET 143
            PT        A+P + +E ET
Sbjct: 121 LPT-------TASPKDDDEEET 133

[Close]

BLAST of Pay0000344 vs. TAIR 10
Match: AT5G62950.3 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-31
Identity = 77/142 (54.23%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
           MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKV+DYL  T A  QTRE++
Sbjct: 1   MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120
             F +K K++ LAKAEILNIINLRP + VEL PIIEN D R  E  T+ + E+   +   
Sbjct: 61  NKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDR--EIDTDGILELVKDLLPP 120

Query: 121 FPTPQIQPTLEATPNEGNEAET 143
            PT        A+P + +E ET
Sbjct: 121 LPT-------TASPKDDDEEET 133

[Close]

BLAST of Pay0000344 vs. TAIR 10
Match: AT5G62950.2 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-28
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1  MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAV 60
          MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKV+DYL  T A  QTRE++
Sbjct: 1  MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61 IAFVEKSKEYDLAKAEILNIINLRPITPVELFP 94
            F +K K++ LAKAEILNIINLRP + VEL P
Sbjct: 61 NKFADKCKDFKLAKAEILNIINLRPSSIVELLP 93

[Close]

BLAST of Pay0000344 vs. TAIR 10
Match: AT3G28956.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-27
Identity = 75/144 (52.08%), Postives = 96/144 (66.67%), Query Frame = 0


Query: 4   LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNRTPACNQTREAVIAF 63
           ++ANAG LTNFE+LDFL S+GA+KD TRV+A +  SEYKV+DYL  T A  QTRE+V   
Sbjct: 1   MKANAGALTNFELLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVNKS 60

Query: 64  VEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHVFPT 123
            +K K++ LAKAEILNIINL P + VEL PIIEN D R  E  T+ + E   +V+ + P 
Sbjct: 61  ADKCKDFKLAKAEILNIINLWPSSIVELLPIIENLDDR--EIDTDGILE---LVKDLLPP 120

Query: 124 PQIQPTLEATPNEGNEAETMEEQE 148
               PT E +P + +E E  E  E
Sbjct: 121 ---LPTAE-SPKDNDEEEETENGE 135

The following BLAST results are available for this feature:

BLAST of Pay0000344 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q60482	2.9e-10	32.21	DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus OX=10141 GN=CRCP...	[more]
Q8VHM6	1.6e-08	29.68	DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus OX=10116 GN=Cr...	[more]
O35427	4.6e-08	28.39	DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus OX=10090 GN=Crcp PE...	[more]
A0JN61	7.8e-08	27.74	DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus OX=9913 GN=CRCP PE=2 ...	[more]
O75575	1.7e-07	27.74	DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens OX=9606 GN=CRCP PE=...	[more]

BLAST of Pay0000344 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UV88	1.4e-81	98.75	DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BLS4	1.4e-81	98.75	DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0LIC1	2.3e-71	87.50	DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis sativus OX=3659 GN=Csa_2...	[more]
A0A6J1H2X6	2.9e-58	75.00	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1L324	5.5e-57	73.75	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Pay0000344 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449317.1	3.0e-81	98.75	PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo] >KAA...	[more]
XP_004145392.1	4.8e-71	87.50	DNA-directed RNA polymerase III subunit rpc9 [Cucumis sativus] >XP_031736825.1 D...	[more]
XP_038875324.1	2.0e-61	75.93	uncharacterized protein LOC120067805 [Benincasa hispida]	[more]
XP_023548749.1	6.1e-58	75.00	uncharacterized protein LOC111807313 [Cucurbita pepo subsp. pepo] >KAG6574960.1 ...	[more]
XP_022958741.1	6.1e-58	75.00	uncharacterized protein LOC111459926 [Cucurbita moschata]	[more]

BLAST of Pay0000344 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62950.1	2.3e-31	54.23	RNA polymerase II, Rpb4, core protein	[more]
AT5G62950.3	2.3e-31	54.23	RNA polymerase II, Rpb4, core protein	[more]
AT5G62950.2	3.1e-28	65.59	RNA polymerase II, Rpb4, core protein	[more]
AT3G28956.1	2.0e-27	52.08	RNA polymerase II, Rpb4, core protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 1..127 e-value: 6.1E-19 score: 78.9
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 11..110 e-value: 9.0E-18 score: 64.8
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 1..122 e-value: 1.0E-26 score: 95.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..160
IPR038846	DNA-directed RNA polymerase III subunit RPC9	PANTHER	PTHR15561	CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN	coord: 1..144
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 4..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0000344.1	Pay0000344.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006384	transcription initiation from RNA polymerase III promoter
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0030880	RNA polymerase complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000166	nucleotide binding