Pay0000328 (gene) Melon (Payzawat) v1

Overview


Name	Pay0000328
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	pentatricopeptide repeat-containing protein MRL1, chloroplastic
Location	chr11: 2920195 .. 2925763 (+)
RNA-Seq Expression	Pay0000328
Synteny	Pay0000328

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTGTCTTTCAACTTGGAATCTTACAACTAATCCTTTGAACATTGTTATTATTCTGTGTGGATATATATTTTTGTGTGTTTCTGATACATACAATCACAATCTGTCAATGGGATGAATTGTGTTTGTAAATCGATAGATTTCGTATAGAAAAATATAAACTAGAATATCAAAAAAGGGGACACGGGGACAGTTATATTGACAGGAACAAAATATATTTATGTCCGGGACTAGTAAATATTATCCGTAATCTATCACCGCGCGGGGGGTATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTATATTTATTATATATTTTTTTTTGTTTCTTATTTTCGTTTTTATTTGGGAACGACTACAGAAGATCTTGTGAGATTGTGTGTAGCACACACATGTTGGTTTGTATTCTTATATAATTTATATATATTTTTATTATTTATTTATGTATATTTTATTTTTGTATATTTTTTTTATTATGTTTATCTATTTTTGTATTGAGTAGTGTTGTGGTAATACAGACAGCATGGGTGTGTATGTGTGTATACCTCTCACTGTGTGAGCAGGGGTTATGTGTGTGTGTGTGACAGTGTAAACCAACGAATTTAGAGTATGAATCTGTATAGTCAAAACTGTCACCATGTAAGAGAGAGCAAGTGGTGTGAGATAAAGAGAGGAGAATAAGGCCCACACACTGGAAAAGTGTGTAACACGGCACCCAGCACACACACACATACTCACACTGAAGTAACACCAGTCTCGGTCAACACAACACCTTCTACACTCGGTTCTTCCTCCTCTCTCTAATTCGCTCAAATTAATTACATTCCTCATTTCTCAACTCTTCTCTCCATACTTATTCACTATATACACACTGACAGAGAGTACATATATATCTATCTACATCACTCACCTTGCGAAGTGTCTGTCAGTGTGCTCTACGTTCTCAAATTCTCCTGTGTGTGTGCCTTGTCTCCTGACCTCTGTCCTCCTTTAGTCCCTCAATTAGTCCTTAGCCTTGCTGCGATCGTCCCCTCCCGTGCGCCTGCGCTCTCGTTCGAATCCGAATTGGGCCTCTTTTGTTAGTGTTCTGCCATTCTCCTAGGCACCTTAATGTTCAAAATGCCGTTTGCAATCGTTTGGTTTTTGTTTCGTTACTCTCTCTTATACTGCAGTCTACATAATTAGAATAAAGGTAAAAGAACTGGCTGTTACGTATGTTGGAATTCATGTGTTTTAAATTTATTTTTTTTGTAATATGTATAATTATAAAATGAATCATACTGTAAGTTTCAAAGTGATTTTGGTTTTCCCCTGTTGCATTTACCGTTCTTGTTTAAATAAGGTTTTTTTAAGCTTAGATATTTATGCATTAGTAATTATTGATTGTAGGATACAATTTATGTACAGGCTCAACTTTTTGTAAATTTAAAAGATTATATGTGAACACGAGAGCAGGCATTCATTTGATACTATTCTATTGTTTGTTTGATGAAGGTTGACACACGTCCTGTTCCTTAAGCCTTTTTTATTGATTATTATCGGAATCCTTAATTTTCAACTTTTTGACAGTTGGGCTCTTACTTTTGGTCATGATTTTTTATAATATTTATTCATATATGATTTTTATCACATCTAATTTCGTAAGGTCTCTTGGTGCATATGTAGAGAATCTATAGCGTCTGTGTTATTTCATGGGGCTTCAACGATTTATATTCTTTTTTGGATTGTATCTATGGTTATTGTATTTTAATCATGTTTTCTTGATCTTAGCCAGATCACCATCGTTGCCCCTATCTCCAAAGCTTCTTATTCAACTGATAAGCATCAACTCTTTATGGTCATGTATGGTCTTTAGAGGAATTCACATGCGGACATTTTTAGAGCAGGTAACATTGTCCGTAATATAGACTGAAGAGAAAGTATTTCTGAAAGACTGTTCTCAGCTTCAAAAGTCTCTCTTCACATACCACTCAAGTTAGACATTCCAGGCTTCTGTTTCAGGTTACTTCTTCTAAGATAGTGGATTCTCTGGGTTTTCAGTATGAAAGGTGAGGCAACAGGATCTTCTTTTCTTTTTCTGCTTAGTTGGATGATCAGTCGTTCCAGCCTCTTATTTTTGGCCATAATGACTACTTACGATTGAATGATCTCATGGTAAATCAATCTATCTGTGTGAAGATTTTCAGAAAAACAAGACTGACTTGGCCACCTGGTTACTTTGTGTCCTTTATATATTGTATGATCAATGAACTCAACATTTAAAGAAGATTGAGGCTCTAAACGGTAAAGAATTAAGTATTTCCAACTTTTCAATTGAAGAACCGCTAGAGTAATATTTACATGGTTCTAATCCACAAGATACAGTCAGTATAAAGAACTTTTCCCTGTACTTCTCATATCTAAAAATAATTTTCTTCACTATGTTAACTGTTTCATAGTGCATAAATTAGAGTGTTAAATTGCTCTCCAGTTCAGTATCTTTAAGTGATCAATTTTTACGGTTGTTTCTTGGTAATAGACAGCAAAATATGATTTTTTCTGTTTCTTATGGCCAAACATTATTTCCTTAAAAGATCTTTTGCATCCTCATATTCCCAGTATTTCCAATTCGAGGTAGGCAAATTGTTTTTACTTGACTCATATGGTTAAAAAATATACGTTATGTAAGTAAAAGTCTGCAGAAACAGAAAAAAATCTTCAAAATATTTCCAGTAATGAAAGGTAAAAACCAGCCCTTCAGTAAGAAAGTTGTAATGTGCCCATCCAAATGAGGCATGGGTAGCATACAAAAATCTTCATGGGTGAGTCAATATAAATCAAATATATATGAATGCCTGTAAGAGTGAAGTAAGGTTGGTTTTCATTTTCAATGGGTATTATGCTGTCAATTAGTTTCTCTGGGTATGGTATCAGGGTTCATATGTTGTGGATTTACGTTAAAGTTATTTGTAAATGAATGAAAATAGGAAAAATAAAAAAACCTCCAGGACACTTCTCACTCACCAATCATAGTAGAAGTCTGAATTGATTTGTGTTCAACTATTTTTGAAAATCGTTTGTTACTTATTTCTTATTTTTGTTTCTAGTCATGACTGGTCATCAGGAATACTTCAAGAATTGGATGTAGACAGAAGAAATAATAGTAAATATAAAATGGGTACCATTTTTATCATTCAATAATTTCTTAGAGGTTTAATGACTTAGCTTATTCTGGAATTTACAACTAATTTATTCAGGTTTTTCGCCTGTGTATGATTATATTATGAAGTTTTTCATATTTGCGAAGAGAGTAAACTGGTTCGAAGCCTTTTCAGTACACCCACTTATTCAAGAACCCACAAATTAGACGGTTTCAATATGGCTTGCTATGGTCTGTTTCAAGGTTCGTCAAGTCTGGGAAATGTAAGGTTAATGTAATTATTTACTATCATTTAATTCTTCTGTTAAACAATCTCAAGTCTTTTACTATACAACATCATTTCTTTAAGGTCATATTATGGCATGGTAAATTATTTCCACAGTGTGAGGCTTTCCAAGGCTGAATGGAAAAGATTCACAACTGTAACACTTACTTTAATCTCAACATGGTGGCAAGTGAAAAGGTGTCAATGGTTTAATATGGTTTCTTTCATTTTGTTACTGTTTTTGTATTTCACTAATGGGCTTAGGACTATCTCAACGTGTTTTCTTATGCGCTTCAATAGATCTTTCTTACATGTAATGAAGTCTTCTATTGATTATATATCTATTTTTTGAACTATATTGATTTAAAATATTTCTCGTTCCTTGGTTATTTTTTTATCCATTTTAACGCTGAATTTCTTCTGTGAGTAAGAAAACATCTTGGAGGTTTTCCAGGTATTTTAACTATATAAGAGGGTTAATTGGCATCAGTTTGTTCTTTTTTCTGGACAGGGTCTGAATTTCTGATATGCATGAATTGTGGGAATCTCACACATTTGGTTTTAATTGGGTCCCATCTACAATTTACTACTGTTCTAGTAACTAACAGCAATGGATTGATTTGGGTTTTTTTACTTTTCCTTCTTATAAACTACGGAACATGCTTTTGAAATTGTTCCTCCTCTTTCATTTGTTGAAAACTTGTATGAAAGATTTTTATTTTTCAACATGAGTTTCCTGTTATCATTGCATTGTCTGAGCTTTTTGCTTCTAGGTATTCCACCGAATGGTTAATGCTGGTGTGGAACCTAACGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCAAAGGCATTTGGCGTGTATGGAATAATGAGGTCAAAGGTATGACCACAGATCTTAACGTTCCTTTTCTCTCATTTTATCTGTGCTTATTTGTTACTTATATTTGTACATATGGATGTGCAAACAAGGCATGCTACATATTCTGACTAATACGGCTGGAATGTTCAACTTGGGTATCTGTACAAATAGATTCTTTCTGGATAAGGTATAGTTCTGTGGCATAAACAACCGATAGCAGCCAAGGACAGAGTTGTATTCAAATGGCACTTACACCATTGTCAGGTCAGCGCTATCGGCTTTTACGTGGCTTGCAGAATCCAGTTACCTATCCTATAACATCAGTATTACAATTTGTTTATGGAAGATTCAATGCTGTCAGTATGTTTTTTATTAAATCCTAAGATTGAAAGGTGTATTTGGAACTCCATATTTGGATTACCCAACAGAGTTTTGATCCCCACTTACTCAAAACCTATTTAACATTTATCAATCTATTTCAGTTTTAGCCTTTTAGGAAGGTTCACAATTCCCTCAGGATTTAGGGTAACCCTTAGTTACGCAATCCCATCCTTACCCCAAACACCCCTTAAAAGTTTCTTGGGCTACCATTCAATTCTCCTCCTCTCTCTCTCTTTCTCCTCGTCTCTCTCTCTCTTCTCTCCAGTTAGGTTGTTGTGCTTGTGGGTTTTAAGAGGCAGAAAAATTCCAATCATTTCCTAAGGGTTATCAGCAAGTAGAAGTGTACAAGAGGATCAATGGATTTATAAGGATTAGACACCAGTTTACACAGATTTTCGTTAATTTTCGGTCAATTTTTATTGACTTGCTTCCCAATGATATCAAATATAACCAGGAAAGTCACTATTGATATGGTTTATGTTAGATTAAGGATACCCTTCTTGGGATATTAGTCATGAATGATTTAAGGAATAATAAAAATGAAGTTATTTTGTAATTTCTTTTTTTAATGTTTATTTAATAATTTCCACTATTACAAAACGTTTTGAATCCGGATATAACAATAGTGGTAAGTAAAGTTGGGAAATAAGGATGTTTTCCGAAGTTTTGATTCTTTACTTTTGCTGTTCAGGCTGCTTTTTGATTTATCCATGGGGGTGCTAATTCTCGTATTTAATTTCTATTGCAGATTTTTCTCAGTGCATTAATAGATGTTGCCATACCATGGCTGTCGAATGCGATCTCCTTTAAATCTTAG

mRNA sequence

ATGCTTTGTCTTTCAACTTGGAATCTTACAACTAATCCTTTGAACATTGTTATTATTCTGTGTGGATATATATTTTTGTCCAGATCACCATCGTTGCCCCTATCTCCAAAGCTTCTTATTCAACTGATAAGCATCAACTCTTTATGGTCATGTATGGTCTTTAGAGGAATTCACATGCGGACATTTTTAGAGCAGGTAACATTGTCCTTGGATGATCAGTCGTTCCAGCCTCTTATTTTTGGCCATAATGACTACTTACGATTGAATGATCTCATGGTAAATCAATCTATCTGTGCATGGGTAGCATACAAAAATCTTCATGGTCATGACTGGTCATCAGGAATACTTCAAGAATTGGATGTAGACAGAAGAAATAATATTTTTCATATTTGCGAAGAGAGTAAACTGGTTCGAAGCCTTTTCAGTACACCCACTTATTCAAGAACCCACAAATTAGACGGTTTCAATATGGCTTGCTATGGTCTGTTTCAAGGTTCGTCAAGTCTGGGAAATGTAAGGTCATATTATGGCATGGTAAATTATTTCCACAGTGTGAGGCTTTCCAAGGCTGAATGGAAAAGATTCACAACTGTAACACTTACTTTAATCTCAACATGGTGGCAAGTATTCCACCGAATGGTTAATGCTGGTGTGGAACCTAACGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCAAAGGCATTTGGCGTGTATGGAATAATGAGGTCAAAGGACAGAGTTGTATTCAAATGGCACTTACACCATTGTCAGGGTTATCAGCAAGTAGAAGTGTACAAGAGGATCAATGGATTTATAAGGATTAGACACCAGTTTACACAGATTTTCATTTTTCTCAGTGCATTAATAGATGTTGCCATACCATGGCTGTCGAATGCGATCTCCTTTAAATCTTAG

Coding sequence (CDS)

ATGCTTTGTCTTTCAACTTGGAATCTTACAACTAATCCTTTGAACATTGTTATTATTCTGTGTGGATATATATTTTTGTCCAGATCACCATCGTTGCCCCTATCTCCAAAGCTTCTTATTCAACTGATAAGCATCAACTCTTTATGGTCATGTATGGTCTTTAGAGGAATTCACATGCGGACATTTTTAGAGCAGGTAACATTGTCCTTGGATGATCAGTCGTTCCAGCCTCTTATTTTTGGCCATAATGACTACTTACGATTGAATGATCTCATGGTAAATCAATCTATCTGTGCATGGGTAGCATACAAAAATCTTCATGGTCATGACTGGTCATCAGGAATACTTCAAGAATTGGATGTAGACAGAAGAAATAATATTTTTCATATTTGCGAAGAGAGTAAACTGGTTCGAAGCCTTTTCAGTACACCCACTTATTCAAGAACCCACAAATTAGACGGTTTCAATATGGCTTGCTATGGTCTGTTTCAAGGTTCGTCAAGTCTGGGAAATGTAAGGTCATATTATGGCATGGTAAATTATTTCCACAGTGTGAGGCTTTCCAAGGCTGAATGGAAAAGATTCACAACTGTAACACTTACTTTAATCTCAACATGGTGGCAAGTATTCCACCGAATGGTTAATGCTGGTGTGGAACCTAACGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCAAAGGCATTTGGCGTGTATGGAATAATGAGGTCAAAGGACAGAGTTGTATTCAAATGGCACTTACACCATTGTCAGGGTTATCAGCAAGTAGAAGTGTACAAGAGGATCAATGGATTTATAAGGATTAGACACCAGTTTACACAGATTTTCATTTTTCTCAGTGCATTAATAGATGTTGCCATACCATGGCTGTCGAATGCGATCTCCTTTAAATCTTAG

Protein sequence

MLCLSTWNLTTNPLNIVIILCGYIFLSRSPSLPLSPKLLIQLISINSLWSCMVFRGIHMRTFLEQVTLSLDDQSFQPLIFGHNDYLRLNDLMVNQSICAWVAYKNLHGHDWSSGILQELDVDRRNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTVTLTLISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKDRVVFKWHLHHCQGYQQVEVYKRINGFIRIRHQFTQIFIFLSALIDVAIPWLSNAISFKS

Homology

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BLAST of Pay0000328 vs. ExPASy Swiss-Prot
Match: Q0WLC6 (Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MRL1 PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-17
Identity = 58/156 (37.18%), Postives = 86/156 (55.13%), Query Frame = 0


Query: 119 LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYY 178
           LD+D+    + F  C++ + V+  F          +  FNM    L    +S  ++    
Sbjct: 432 LDMDKIYHASFFKACKKQRAVKEAFRFTKLILNPTMSTFNM----LMSVCASSQDIEGAR 491

Query: 179 GMVNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDG 238
           G++       ++ A+ K +TT+  +      +   ++VFH+M N+GVE N+HT+GALIDG
Sbjct: 492 GVLRLVQESGMT-ADCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDG 551

Query: 239 CARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC 264
           CARAGQVAKAFG YGI+RSK    DRVVF   +  C
Sbjct: 552 CARAGQVAKAFGAYGILRSKNVKPDRVVFNALISAC 582

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BLAST of Pay0000328 vs. ExPASy TrEMBL
Match: A0A5D3BKV6 (Pentatricopeptide repeat-containing protein MRL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001730 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-21
Identity = 80/194 (41.24%), Postives = 101/194 (52.06%), Query Frame = 0


Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 406 VHYKNLHVDQYKSYNQCLKGGRLHDCIRILQDMETEGILDMNKIYHGKFFNICKSKKAVQ 465

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F      +   L  FNM    L    +S  +    + +V       + KA+ K +TT+
Sbjct: 466 EAFQYTALIQNPTLSTFNM----LMSVCASRQDSERAFQVVRLVQEAGM-KADCKLYTTL 525

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 526 ISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 585

[Close]

BLAST of Pay0000328 vs. ExPASy TrEMBL
Match: A0A1S3C5X8 (pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497289 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-21
Identity = 80/194 (41.24%), Postives = 101/194 (52.06%), Query Frame = 0


Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 406 VHYKNLHVDQYKSYNQCLKGGRLHDCIRILQDMETEGILDMNKIYHGKFFNICKSKKAVQ 465

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F      +   L  FNM    L    +S  +    + +V       + KA+ K +TT+
Sbjct: 466 EAFQYTALIQNPTLSTFNM----LMSVCASRQDSERAFQVVRLVQEAGM-KADCKLYTTL 525

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 526 ISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 585

[Close]

BLAST of Pay0000328 vs. ExPASy TrEMBL
Match: A0A6J1JHM6 (pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484582 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.2e-20
Identity = 78/194 (40.21%), Postives = 100/194 (51.55%), Query Frame = 0


Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 404 VHYKNLHVDQFKSYNQCLKGGRLPECIKILQDMEKEGLLDMNKIYHGKFFNICKTKKAVQ 463

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F          L  FNM    L    +S  +  S + ++       + +A+ K +TT+
Sbjct: 464 EAFQFTILIPNPTLSTFNM----LMSVCASSQDSDSAFQVMRLVQEAGM-RADCKLYTTL 523

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVN GVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 524 ISTCGKSGKVDAMFEVFHRMVNTGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 583

[Close]

BLAST of Pay0000328 vs. ExPASy TrEMBL
Match: A0A6J1JFL7 (pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484582 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.2e-20
Identity = 78/194 (40.21%), Postives = 100/194 (51.55%), Query Frame = 0


Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 391 VHYKNLHVDQFKSYNQCLKGGRLPECIKILQDMEKEGLLDMNKIYHGKFFNICKTKKAVQ 450

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F          L  FNM    L    +S  +  S + ++       + +A+ K +TT+
Sbjct: 451 EAFQFTILIPNPTLSTFNM----LMSVCASSQDSDSAFQVMRLVQEAGM-RADCKLYTTL 510

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVN GVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 511 ISTCGKSGKVDAMFEVFHRMVNTGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 570

[Close]

BLAST of Pay0000328 vs. ExPASy TrEMBL
Match: A0A0A0LLH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258850 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.1e-20
Identity = 69/156 (44.23%), Postives = 88/156 (56.41%), Query Frame = 0


Query: 119 LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYY 178
           LD+++      F+IC+  K V+  F      +   L  FNM    L    +S  +    +
Sbjct: 444 LDMNKIYHGKFFNICKSKKAVQEAFQYTALIQNPTLSTFNM----LMSVCASSQDSERAF 503

Query: 179 GMVNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDG 238
            +V       + KA+ K +TT+  T      +   ++VFHRMVNAGVEPNVHTYGALIDG
Sbjct: 504 QVVRLVQEAGM-KADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDG 563

Query: 239 CARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC 264
           CARA QVAKAFGVYGIMRSK    DRVVF   +  C
Sbjct: 564 CARAAQVAKAFGVYGIMRSKNVKPDRVVFNALITAC 594

[Close]

BLAST of Pay0000328 vs. NCBI nr
Match: XP_008457640.1 (PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Cucumis melo] >KAA0045685.1 pentatricopeptide repeat-containing protein MRL1 [Cucumis melo var. makuwa] >TYJ99599.1 pentatricopeptide repeat-containing protein MRL1 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-21
Identity = 80/194 (41.24%), Postives = 101/194 (52.06%), Query Frame = 0


Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 406 VHYKNLHVDQYKSYNQCLKGGRLHDCIRILQDMETEGILDMNKIYHGKFFNICKSKKAVQ 465

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F      +   L  FNM    L    +S  +    + +V       + KA+ K +TT+
Sbjct: 466 EAFQYTALIQNPTLSTFNM----LMSVCASRQDSERAFQVVRLVQEAGM-KADCKLYTTL 525

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 526 ISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 585

[Close]

BLAST of Pay0000328 vs. NCBI nr
Match: XP_038901397.1 (pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-20
Identity = 84/199 (42.21%), Postives = 103/199 (51.76%), Query Frame = 0


Query: 101 VAYKNLHGHDWSS--------------GILQE------LDVDR--RNNIFHICEESKLVR 160
           V YKNLH   + S               ILQ+      LD+++      F+IC+  K V+
Sbjct: 352 VHYKNLHVDQYKSYNQCLKGGRLHDCIKILQDMEREGLLDMNKIYHGKFFNICKSKKAVQ 411

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRL-----SKAEWK 220
             F          L  FNM    +   +SS  + R+       F  VRL      KA+ K
Sbjct: 412 EAFQYTALIPNPTLSTFNML---MSVCASSQDSDRA-------FQVVRLVQEAGMKADCK 471

Query: 221 RFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM 264
            +TT+  T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM
Sbjct: 472 LYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM 531

[Close]

BLAST of Pay0000328 vs. NCBI nr
Match: XP_038901395.1 (pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-20
Identity = 84/199 (42.21%), Postives = 103/199 (51.76%), Query Frame = 0


Query: 101 VAYKNLHGHDWSS--------------GILQE------LDVDR--RNNIFHICEESKLVR 160
           V YKNLH   + S               ILQ+      LD+++      F+IC+  K V+
Sbjct: 407 VHYKNLHVDQYKSYNQCLKGGRLHDCIKILQDMEREGLLDMNKIYHGKFFNICKSKKAVQ 466

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRL-----SKAEWK 220
             F          L  FNM    +   +SS  + R+       F  VRL      KA+ K
Sbjct: 467 EAFQYTALIPNPTLSTFNML---MSVCASSQDSDRA-------FQVVRLVQEAGMKADCK 526

Query: 221 RFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM 264
            +TT+  T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM
Sbjct: 527 LYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM 586

[Close]

BLAST of Pay0000328 vs. NCBI nr
Match: XP_023512947.1 (pentatricopeptide repeat-containing protein MRL1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 9.7e-20
Identity = 78/194 (40.21%), Postives = 100/194 (51.55%), Query Frame = 0


Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 391 VHYKNLHVDQFKSYNQCLKGGRLPECIKILQDMEKEGLLDMNKIYHGKFFNICKSKKAVQ 450

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F          L  FNM    L    +S  +  S + ++       + +A+ K +TT+
Sbjct: 451 EAFQFTILIPNPTLSTFNM----LMSVCASSQDSDSAFQVMRLVQEAGM-RADCKLYTTL 510

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVN GVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 511 ISTCGKSGEVDAMFEVFHRMVNTGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 570

[Close]

BLAST of Pay0000328 vs. NCBI nr
Match: XP_022987004.1 (pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-19
Identity = 78/194 (40.21%), Postives = 100/194 (51.55%), Query Frame = 0


Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 404 VHYKNLHVDQFKSYNQCLKGGRLPECIKILQDMEKEGLLDMNKIYHGKFFNICKTKKAVQ 463

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F          L  FNM    L    +S  +  S + ++       + +A+ K +TT+
Sbjct: 464 EAFQFTILIPNPTLSTFNM----LMSVCASSQDSDSAFQVMRLVQEAGM-RADCKLYTTL 523

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVN GVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 524 ISTCGKSGKVDAMFEVFHRMVNTGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 583

[Close]

BLAST of Pay0000328 vs. TAIR 10
Match: AT4G34830.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-18
Identity = 58/156 (37.18%), Postives = 86/156 (55.13%), Query Frame = 0


Query: 119 LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYY 178
           LD+D+    + F  C++ + V+  F          +  FNM    L    +S  ++    
Sbjct: 432 LDMDKIYHASFFKACKKQRAVKEAFRFTKLILNPTMSTFNM----LMSVCASSQDIEGAR 491

Query: 179 GMVNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDG 238
           G++       ++ A+ K +TT+  +      +   ++VFH+M N+GVE N+HT+GALIDG
Sbjct: 492 GVLRLVQESGMT-ADCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDG 551

Query: 239 CARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC 264
           CARAGQVAKAFG YGI+RSK    DRVVF   +  C
Sbjct: 552 CARAGQVAKAFGAYGILRSKNVKPDRVVFNALISAC 582

[Close]

BLAST of Pay0000328 vs. TAIR 10
Match: AT3G07290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 2.1e-04
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 202 LISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKDRV 255
           LI   + +F  M+  G +PNVHTY  LIDG  R G++ +A GV   M  KDR+
Sbjct: 316 LIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKM-VKDRI 367

[Close]

BLAST of Pay0000328 vs. TAIR 10
Match: AT1G20300.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.7e-04
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 203 ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM 249
           IS   +VF  M  AG+EPNV+TY  +ID   R GQ+++A  V+  M
Sbjct: 271 ISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADM 316

The following BLAST results are available for this feature:

BLAST of Pay0000328 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WLC6	2.1e-17	37.18	Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis t...	[more]

BLAST of Pay0000328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BKV6	1.1e-21	41.24	Pentatricopeptide repeat-containing protein MRL1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3C5X8	1.1e-21	41.24	pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Cucumis melo ...	[more]
A0A6J1JHM6	6.2e-20	40.21	pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X1 ...	[more]
A0A6J1JFL7	6.2e-20	40.21	pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X2 ...	[more]
A0A0A0LLH2	8.1e-20	44.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258850 PE=3 SV=1	[more]

BLAST of Pay0000328 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457640.1	2.3e-21	41.24	PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Cucu...	[more]
XP_038901397.1	1.2e-20	42.21	pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X2 [Beni...	[more]
XP_038901395.1	1.2e-20	42.21	pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 [Beni...	[more]
XP_023512947.1	9.7e-20	40.21	pentatricopeptide repeat-containing protein MRL1, chloroplastic [Cucurbita pepo ...	[more]
XP_022987004.1	1.3e-19	40.21	pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X1 ...	[more]

BLAST of Pay0000328 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34830.1	1.5e-18	37.18	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G07290.1	2.1e-04	45.28	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G20300.1	2.7e-04	45.65	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 166..280 e-value: 5.6E-13 score: 50.6
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 217..248 e-value: 1.4E-7 score: 31.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 223..252 e-value: 5.6E-6 score: 24.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 221..255 score: 10.062531
None	No IPR available	PANTHER	PTHR47935	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC	coord: 203..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0000328.1	Pay0000328.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding