Pay0000328 (gene) Melon (Payzawat) v1

Overview
NamePay0000328
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionpentatricopeptide repeat-containing protein MRL1, chloroplastic
Locationchr11: 2920195 .. 2925763 (+)
RNA-Seq ExpressionPay0000328
SyntenyPay0000328
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTGTCTTTCAACTTGGAATCTTACAACTAATCCTTTGAACATTGTTATTATTCTGTGTGGATATATATTTTTGTGTGTTTCTGATACATACAATCACAATCTGTCAATGGGATGAATTGTGTTTGTAAATCGATAGATTTCGTATAGAAAAATATAAACTAGAATATCAAAAAAGGGGACACGGGGACAGTTATATTGACAGGAACAAAATATATTTATGTCCGGGACTAGTAAATATTATCCGTAATCTATCACCGCGCGGGGGGTATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTATATTTATTATATATTTTTTTTTGTTTCTTATTTTCGTTTTTATTTGGGAACGACTACAGAAGATCTTGTGAGATTGTGTGTAGCACACACATGTTGGTTTGTATTCTTATATAATTTATATATATTTTTATTATTTATTTATGTATATTTTATTTTTGTATATTTTTTTTATTATGTTTATCTATTTTTGTATTGAGTAGTGTTGTGGTAATACAGACAGCATGGGTGTGTATGTGTGTATACCTCTCACTGTGTGAGCAGGGGTTATGTGTGTGTGTGTGACAGTGTAAACCAACGAATTTAGAGTATGAATCTGTATAGTCAAAACTGTCACCATGTAAGAGAGAGCAAGTGGTGTGAGATAAAGAGAGGAGAATAAGGCCCACACACTGGAAAAGTGTGTAACACGGCACCCAGCACACACACACATACTCACACTGAAGTAACACCAGTCTCGGTCAACACAACACCTTCTACACTCGGTTCTTCCTCCTCTCTCTAATTCGCTCAAATTAATTACATTCCTCATTTCTCAACTCTTCTCTCCATACTTATTCACTATATACACACTGACAGAGAGTACATATATATCTATCTACATCACTCACCTTGCGAAGTGTCTGTCAGTGTGCTCTACGTTCTCAAATTCTCCTGTGTGTGTGCCTTGTCTCCTGACCTCTGTCCTCCTTTAGTCCCTCAATTAGTCCTTAGCCTTGCTGCGATCGTCCCCTCCCGTGCGCCTGCGCTCTCGTTCGAATCCGAATTGGGCCTCTTTTGTTAGTGTTCTGCCATTCTCCTAGGCACCTTAATGTTCAAAATGCCGTTTGCAATCGTTTGGTTTTTGTTTCGTTACTCTCTCTTATACTGCAGTCTACATAATTAGAATAAAGGTAAAAGAACTGGCTGTTACGTATGTTGGAATTCATGTGTTTTAAATTTATTTTTTTTGTAATATGTATAATTATAAAATGAATCATACTGTAAGTTTCAAAGTGATTTTGGTTTTCCCCTGTTGCATTTACCGTTCTTGTTTAAATAAGGTTTTTTTAAGCTTAGATATTTATGCATTAGTAATTATTGATTGTAGGATACAATTTATGTACAGGCTCAACTTTTTGTAAATTTAAAAGATTATATGTGAACACGAGAGCAGGCATTCATTTGATACTATTCTATTGTTTGTTTGATGAAGGTTGACACACGTCCTGTTCCTTAAGCCTTTTTTATTGATTATTATCGGAATCCTTAATTTTCAACTTTTTGACAGTTGGGCTCTTACTTTTGGTCATGATTTTTTATAATATTTATTCATATATGATTTTTATCACATCTAATTTCGTAAGGTCTCTTGGTGCATATGTAGAGAATCTATAGCGTCTGTGTTATTTCATGGGGCTTCAACGATTTATATTCTTTTTTGGATTGTATCTATGGTTATTGTATTTTAATCATGTTTTCTTGATCTTAGCCAGATCACCATCGTTGCCCCTATCTCCAAAGCTTCTTATTCAACTGATAAGCATCAACTCTTTATGGTCATGTATGGTCTTTAGAGGAATTCACATGCGGACATTTTTAGAGCAGGTAACATTGTCCGTAATATAGACTGAAGAGAAAGTATTTCTGAAAGACTGTTCTCAGCTTCAAAAGTCTCTCTTCACATACCACTCAAGTTAGACATTCCAGGCTTCTGTTTCAGGTTACTTCTTCTAAGATAGTGGATTCTCTGGGTTTTCAGTATGAAAGGTGAGGCAACAGGATCTTCTTTTCTTTTTCTGCTTAGTTGGATGATCAGTCGTTCCAGCCTCTTATTTTTGGCCATAATGACTACTTACGATTGAATGATCTCATGGTAAATCAATCTATCTGTGTGAAGATTTTCAGAAAAACAAGACTGACTTGGCCACCTGGTTACTTTGTGTCCTTTATATATTGTATGATCAATGAACTCAACATTTAAAGAAGATTGAGGCTCTAAACGGTAAAGAATTAAGTATTTCCAACTTTTCAATTGAAGAACCGCTAGAGTAATATTTACATGGTTCTAATCCACAAGATACAGTCAGTATAAAGAACTTTTCCCTGTACTTCTCATATCTAAAAATAATTTTCTTCACTATGTTAACTGTTTCATAGTGCATAAATTAGAGTGTTAAATTGCTCTCCAGTTCAGTATCTTTAAGTGATCAATTTTTACGGTTGTTTCTTGGTAATAGACAGCAAAATATGATTTTTTCTGTTTCTTATGGCCAAACATTATTTCCTTAAAAGATCTTTTGCATCCTCATATTCCCAGTATTTCCAATTCGAGGTAGGCAAATTGTTTTTACTTGACTCATATGGTTAAAAAATATACGTTATGTAAGTAAAAGTCTGCAGAAACAGAAAAAAATCTTCAAAATATTTCCAGTAATGAAAGGTAAAAACCAGCCCTTCAGTAAGAAAGTTGTAATGTGCCCATCCAAATGAGGCATGGGTAGCATACAAAAATCTTCATGGGTGAGTCAATATAAATCAAATATATATGAATGCCTGTAAGAGTGAAGTAAGGTTGGTTTTCATTTTCAATGGGTATTATGCTGTCAATTAGTTTCTCTGGGTATGGTATCAGGGTTCATATGTTGTGGATTTACGTTAAAGTTATTTGTAAATGAATGAAAATAGGAAAAATAAAAAAACCTCCAGGACACTTCTCACTCACCAATCATAGTAGAAGTCTGAATTGATTTGTGTTCAACTATTTTTGAAAATCGTTTGTTACTTATTTCTTATTTTTGTTTCTAGTCATGACTGGTCATCAGGAATACTTCAAGAATTGGATGTAGACAGAAGAAATAATAGTAAATATAAAATGGGTACCATTTTTATCATTCAATAATTTCTTAGAGGTTTAATGACTTAGCTTATTCTGGAATTTACAACTAATTTATTCAGGTTTTTCGCCTGTGTATGATTATATTATGAAGTTTTTCATATTTGCGAAGAGAGTAAACTGGTTCGAAGCCTTTTCAGTACACCCACTTATTCAAGAACCCACAAATTAGACGGTTTCAATATGGCTTGCTATGGTCTGTTTCAAGGTTCGTCAAGTCTGGGAAATGTAAGGTTAATGTAATTATTTACTATCATTTAATTCTTCTGTTAAACAATCTCAAGTCTTTTACTATACAACATCATTTCTTTAAGGTCATATTATGGCATGGTAAATTATTTCCACAGTGTGAGGCTTTCCAAGGCTGAATGGAAAAGATTCACAACTGTAACACTTACTTTAATCTCAACATGGTGGCAAGTGAAAAGGTGTCAATGGTTTAATATGGTTTCTTTCATTTTGTTACTGTTTTTGTATTTCACTAATGGGCTTAGGACTATCTCAACGTGTTTTCTTATGCGCTTCAATAGATCTTTCTTACATGTAATGAAGTCTTCTATTGATTATATATCTATTTTTTGAACTATATTGATTTAAAATATTTCTCGTTCCTTGGTTATTTTTTTATCCATTTTAACGCTGAATTTCTTCTGTGAGTAAGAAAACATCTTGGAGGTTTTCCAGGTATTTTAACTATATAAGAGGGTTAATTGGCATCAGTTTGTTCTTTTTTCTGGACAGGGTCTGAATTTCTGATATGCATGAATTGTGGGAATCTCACACATTTGGTTTTAATTGGGTCCCATCTACAATTTACTACTGTTCTAGTAACTAACAGCAATGGATTGATTTGGGTTTTTTTACTTTTCCTTCTTATAAACTACGGAACATGCTTTTGAAATTGTTCCTCCTCTTTCATTTGTTGAAAACTTGTATGAAAGATTTTTATTTTTCAACATGAGTTTCCTGTTATCATTGCATTGTCTGAGCTTTTTGCTTCTAGGTATTCCACCGAATGGTTAATGCTGGTGTGGAACCTAACGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCAAAGGCATTTGGCGTGTATGGAATAATGAGGTCAAAGGTATGACCACAGATCTTAACGTTCCTTTTCTCTCATTTTATCTGTGCTTATTTGTTACTTATATTTGTACATATGGATGTGCAAACAAGGCATGCTACATATTCTGACTAATACGGCTGGAATGTTCAACTTGGGTATCTGTACAAATAGATTCTTTCTGGATAAGGTATAGTTCTGTGGCATAAACAACCGATAGCAGCCAAGGACAGAGTTGTATTCAAATGGCACTTACACCATTGTCAGGTCAGCGCTATCGGCTTTTACGTGGCTTGCAGAATCCAGTTACCTATCCTATAACATCAGTATTACAATTTGTTTATGGAAGATTCAATGCTGTCAGTATGTTTTTTATTAAATCCTAAGATTGAAAGGTGTATTTGGAACTCCATATTTGGATTACCCAACAGAGTTTTGATCCCCACTTACTCAAAACCTATTTAACATTTATCAATCTATTTCAGTTTTAGCCTTTTAGGAAGGTTCACAATTCCCTCAGGATTTAGGGTAACCCTTAGTTACGCAATCCCATCCTTACCCCAAACACCCCTTAAAAGTTTCTTGGGCTACCATTCAATTCTCCTCCTCTCTCTCTCTTTCTCCTCGTCTCTCTCTCTCTTCTCTCCAGTTAGGTTGTTGTGCTTGTGGGTTTTAAGAGGCAGAAAAATTCCAATCATTTCCTAAGGGTTATCAGCAAGTAGAAGTGTACAAGAGGATCAATGGATTTATAAGGATTAGACACCAGTTTACACAGATTTTCGTTAATTTTCGGTCAATTTTTATTGACTTGCTTCCCAATGATATCAAATATAACCAGGAAAGTCACTATTGATATGGTTTATGTTAGATTAAGGATACCCTTCTTGGGATATTAGTCATGAATGATTTAAGGAATAATAAAAATGAAGTTATTTTGTAATTTCTTTTTTTAATGTTTATTTAATAATTTCCACTATTACAAAACGTTTTGAATCCGGATATAACAATAGTGGTAAGTAAAGTTGGGAAATAAGGATGTTTTCCGAAGTTTTGATTCTTTACTTTTGCTGTTCAGGCTGCTTTTTGATTTATCCATGGGGGTGCTAATTCTCGTATTTAATTTCTATTGCAGATTTTTCTCAGTGCATTAATAGATGTTGCCATACCATGGCTGTCGAATGCGATCTCCTTTAAATCTTAG

mRNA sequence

ATGCTTTGTCTTTCAACTTGGAATCTTACAACTAATCCTTTGAACATTGTTATTATTCTGTGTGGATATATATTTTTGTCCAGATCACCATCGTTGCCCCTATCTCCAAAGCTTCTTATTCAACTGATAAGCATCAACTCTTTATGGTCATGTATGGTCTTTAGAGGAATTCACATGCGGACATTTTTAGAGCAGGTAACATTGTCCTTGGATGATCAGTCGTTCCAGCCTCTTATTTTTGGCCATAATGACTACTTACGATTGAATGATCTCATGGTAAATCAATCTATCTGTGCATGGGTAGCATACAAAAATCTTCATGGTCATGACTGGTCATCAGGAATACTTCAAGAATTGGATGTAGACAGAAGAAATAATATTTTTCATATTTGCGAAGAGAGTAAACTGGTTCGAAGCCTTTTCAGTACACCCACTTATTCAAGAACCCACAAATTAGACGGTTTCAATATGGCTTGCTATGGTCTGTTTCAAGGTTCGTCAAGTCTGGGAAATGTAAGGTCATATTATGGCATGGTAAATTATTTCCACAGTGTGAGGCTTTCCAAGGCTGAATGGAAAAGATTCACAACTGTAACACTTACTTTAATCTCAACATGGTGGCAAGTATTCCACCGAATGGTTAATGCTGGTGTGGAACCTAACGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCAAAGGCATTTGGCGTGTATGGAATAATGAGGTCAAAGGACAGAGTTGTATTCAAATGGCACTTACACCATTGTCAGGGTTATCAGCAAGTAGAAGTGTACAAGAGGATCAATGGATTTATAAGGATTAGACACCAGTTTACACAGATTTTCATTTTTCTCAGTGCATTAATAGATGTTGCCATACCATGGCTGTCGAATGCGATCTCCTTTAAATCTTAG

Coding sequence (CDS)

ATGCTTTGTCTTTCAACTTGGAATCTTACAACTAATCCTTTGAACATTGTTATTATTCTGTGTGGATATATATTTTTGTCCAGATCACCATCGTTGCCCCTATCTCCAAAGCTTCTTATTCAACTGATAAGCATCAACTCTTTATGGTCATGTATGGTCTTTAGAGGAATTCACATGCGGACATTTTTAGAGCAGGTAACATTGTCCTTGGATGATCAGTCGTTCCAGCCTCTTATTTTTGGCCATAATGACTACTTACGATTGAATGATCTCATGGTAAATCAATCTATCTGTGCATGGGTAGCATACAAAAATCTTCATGGTCATGACTGGTCATCAGGAATACTTCAAGAATTGGATGTAGACAGAAGAAATAATATTTTTCATATTTGCGAAGAGAGTAAACTGGTTCGAAGCCTTTTCAGTACACCCACTTATTCAAGAACCCACAAATTAGACGGTTTCAATATGGCTTGCTATGGTCTGTTTCAAGGTTCGTCAAGTCTGGGAAATGTAAGGTCATATTATGGCATGGTAAATTATTTCCACAGTGTGAGGCTTTCCAAGGCTGAATGGAAAAGATTCACAACTGTAACACTTACTTTAATCTCAACATGGTGGCAAGTATTCCACCGAATGGTTAATGCTGGTGTGGAACCTAACGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCAAAGGCATTTGGCGTGTATGGAATAATGAGGTCAAAGGACAGAGTTGTATTCAAATGGCACTTACACCATTGTCAGGGTTATCAGCAAGTAGAAGTGTACAAGAGGATCAATGGATTTATAAGGATTAGACACCAGTTTACACAGATTTTCATTTTTCTCAGTGCATTAATAGATGTTGCCATACCATGGCTGTCGAATGCGATCTCCTTTAAATCTTAG

Protein sequence

MLCLSTWNLTTNPLNIVIILCGYIFLSRSPSLPLSPKLLIQLISINSLWSCMVFRGIHMRTFLEQVTLSLDDQSFQPLIFGHNDYLRLNDLMVNQSICAWVAYKNLHGHDWSSGILQELDVDRRNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTVTLTLISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKDRVVFKWHLHHCQGYQQVEVYKRINGFIRIRHQFTQIFIFLSALIDVAIPWLSNAISFKS
Homology
[Close]
BLAST of Pay0000328 vs. ExPASy Swiss-Prot
Match: Q0WLC6 (Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MRL1 PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-17
Identity = 58/156 (37.18%), Postives = 86/156 (55.13%), Query Frame = 0 

Query: 119 LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYY 178
           LD+D+    + F  C++ + V+  F          +  FNM    L    +S  ++    
Sbjct: 432 LDMDKIYHASFFKACKKQRAVKEAFRFTKLILNPTMSTFNM----LMSVCASSQDIEGAR 491

Query: 179 GMVNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDG 238
           G++       ++ A+ K +TT+  +      +   ++VFH+M N+GVE N+HT+GALIDG
Sbjct: 492 GVLRLVQESGMT-ADCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDG 551

Query: 239 CARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC 264
           CARAGQVAKAFG YGI+RSK    DRVVF   +  C
Sbjct: 552 CARAGQVAKAFGAYGILRSKNVKPDRVVFNALISAC 582

[Close]
BLAST of Pay0000328 vs. ExPASy TrEMBL
Match: A0A5D3BKV6 (Pentatricopeptide repeat-containing protein MRL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001730 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-21
Identity = 80/194 (41.24%), Postives = 101/194 (52.06%), Query Frame = 0 

Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 406 VHYKNLHVDQYKSYNQCLKGGRLHDCIRILQDMETEGILDMNKIYHGKFFNICKSKKAVQ 465

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F      +   L  FNM    L    +S  +    + +V       + KA+ K +TT+
Sbjct: 466 EAFQYTALIQNPTLSTFNM----LMSVCASRQDSERAFQVVRLVQEAGM-KADCKLYTTL 525

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 526 ISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 585

[Close]
BLAST of Pay0000328 vs. ExPASy TrEMBL
Match: A0A1S3C5X8 (pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497289 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-21
Identity = 80/194 (41.24%), Postives = 101/194 (52.06%), Query Frame = 0 

Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 406 VHYKNLHVDQYKSYNQCLKGGRLHDCIRILQDMETEGILDMNKIYHGKFFNICKSKKAVQ 465

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F      +   L  FNM    L    +S  +    + +V       + KA+ K +TT+
Sbjct: 466 EAFQYTALIQNPTLSTFNM----LMSVCASRQDSERAFQVVRLVQEAGM-KADCKLYTTL 525

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 526 ISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 585

[Close]
BLAST of Pay0000328 vs. ExPASy TrEMBL
Match: A0A6J1JHM6 (pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484582 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.2e-20
Identity = 78/194 (40.21%), Postives = 100/194 (51.55%), Query Frame = 0 

Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 404 VHYKNLHVDQFKSYNQCLKGGRLPECIKILQDMEKEGLLDMNKIYHGKFFNICKTKKAVQ 463

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F          L  FNM    L    +S  +  S + ++       + +A+ K +TT+
Sbjct: 464 EAFQFTILIPNPTLSTFNM----LMSVCASSQDSDSAFQVMRLVQEAGM-RADCKLYTTL 523

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVN GVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 524 ISTCGKSGKVDAMFEVFHRMVNTGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 583

[Close]
BLAST of Pay0000328 vs. ExPASy TrEMBL
Match: A0A6J1JFL7 (pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484582 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.2e-20
Identity = 78/194 (40.21%), Postives = 100/194 (51.55%), Query Frame = 0 

Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 391 VHYKNLHVDQFKSYNQCLKGGRLPECIKILQDMEKEGLLDMNKIYHGKFFNICKTKKAVQ 450

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F          L  FNM    L    +S  +  S + ++       + +A+ K +TT+
Sbjct: 451 EAFQFTILIPNPTLSTFNM----LMSVCASSQDSDSAFQVMRLVQEAGM-RADCKLYTTL 510

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVN GVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 511 ISTCGKSGKVDAMFEVFHRMVNTGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 570

[Close]
BLAST of Pay0000328 vs. ExPASy TrEMBL
Match: A0A0A0LLH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258850 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.1e-20
Identity = 69/156 (44.23%), Postives = 88/156 (56.41%), Query Frame = 0 

Query: 119 LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYY 178
           LD+++      F+IC+  K V+  F      +   L  FNM    L    +S  +    +
Sbjct: 444 LDMNKIYHGKFFNICKSKKAVQEAFQYTALIQNPTLSTFNM----LMSVCASSQDSERAF 503

Query: 179 GMVNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDG 238
            +V       + KA+ K +TT+  T      +   ++VFHRMVNAGVEPNVHTYGALIDG
Sbjct: 504 QVVRLVQEAGM-KADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDG 563

Query: 239 CARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC 264
           CARA QVAKAFGVYGIMRSK    DRVVF   +  C
Sbjct: 564 CARAAQVAKAFGVYGIMRSKNVKPDRVVFNALITAC 594

[Close]
BLAST of Pay0000328 vs. NCBI nr
Match: XP_008457640.1 (PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Cucumis melo] >KAA0045685.1 pentatricopeptide repeat-containing protein MRL1 [Cucumis melo var. makuwa] >TYJ99599.1 pentatricopeptide repeat-containing protein MRL1 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-21
Identity = 80/194 (41.24%), Postives = 101/194 (52.06%), Query Frame = 0 

Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 406 VHYKNLHVDQYKSYNQCLKGGRLHDCIRILQDMETEGILDMNKIYHGKFFNICKSKKAVQ 465

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F      +   L  FNM    L    +S  +    + +V       + KA+ K +TT+
Sbjct: 466 EAFQYTALIQNPTLSTFNM----LMSVCASRQDSERAFQVVRLVQEAGM-KADCKLYTTL 525

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 526 ISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 585

[Close]
BLAST of Pay0000328 vs. NCBI nr
Match: XP_038901397.1 (pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-20
Identity = 84/199 (42.21%), Postives = 103/199 (51.76%), Query Frame = 0 

Query: 101 VAYKNLHGHDWSS--------------GILQE------LDVDR--RNNIFHICEESKLVR 160
           V YKNLH   + S               ILQ+      LD+++      F+IC+  K V+
Sbjct: 352 VHYKNLHVDQYKSYNQCLKGGRLHDCIKILQDMEREGLLDMNKIYHGKFFNICKSKKAVQ 411

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRL-----SKAEWK 220
             F          L  FNM    +   +SS  + R+       F  VRL      KA+ K
Sbjct: 412 EAFQYTALIPNPTLSTFNML---MSVCASSQDSDRA-------FQVVRLVQEAGMKADCK 471

Query: 221 RFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM 264
            +TT+  T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM
Sbjct: 472 LYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM 531

[Close]
BLAST of Pay0000328 vs. NCBI nr
Match: XP_038901395.1 (pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-20
Identity = 84/199 (42.21%), Postives = 103/199 (51.76%), Query Frame = 0 

Query: 101 VAYKNLHGHDWSS--------------GILQE------LDVDR--RNNIFHICEESKLVR 160
           V YKNLH   + S               ILQ+      LD+++      F+IC+  K V+
Sbjct: 407 VHYKNLHVDQYKSYNQCLKGGRLHDCIKILQDMEREGLLDMNKIYHGKFFNICKSKKAVQ 466

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRL-----SKAEWK 220
             F          L  FNM    +   +SS  + R+       F  VRL      KA+ K
Sbjct: 467 EAFQYTALIPNPTLSTFNML---MSVCASSQDSDRA-------FQVVRLVQEAGMKADCK 526

Query: 221 RFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM 264
            +TT+  T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM
Sbjct: 527 LYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM 586

[Close]
BLAST of Pay0000328 vs. NCBI nr
Match: XP_023512947.1 (pentatricopeptide repeat-containing protein MRL1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 9.7e-20
Identity = 78/194 (40.21%), Postives = 100/194 (51.55%), Query Frame = 0 

Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 391 VHYKNLHVDQFKSYNQCLKGGRLPECIKILQDMEKEGLLDMNKIYHGKFFNICKSKKAVQ 450

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F          L  FNM    L    +S  +  S + ++       + +A+ K +TT+
Sbjct: 451 EAFQFTILIPNPTLSTFNM----LMSVCASSQDSDSAFQVMRLVQEAGM-RADCKLYTTL 510

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVN GVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 511 ISTCGKSGEVDAMFEVFHRMVNTGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 570

[Close]
BLAST of Pay0000328 vs. NCBI nr
Match: XP_022987004.1 (pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-19
Identity = 78/194 (40.21%), Postives = 100/194 (51.55%), Query Frame = 0 

Query: 101 VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVR 160
           V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+
Sbjct: 404 VHYKNLHVDQFKSYNQCLKGGRLPECIKILQDMEKEGLLDMNKIYHGKFFNICKTKKAVQ 463

Query: 161 SLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTV 220
             F          L  FNM    L    +S  +  S + ++       + +A+ K +TT+
Sbjct: 464 EAFQFTILIPNPTLSTFNM----LMSVCASSQDSDSAFQVMRLVQEAGM-RADCKLYTTL 523

Query: 221 TLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK-- 264
             T      +   ++VFHRMVN GVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK  
Sbjct: 524 ISTCGKSGKVDAMFEVFHRMVNTGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNV 583

[Close]
BLAST of Pay0000328 vs. TAIR 10
Match: AT4G34830.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-18
Identity = 58/156 (37.18%), Postives = 86/156 (55.13%), Query Frame = 0 

Query: 119 LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYY 178
           LD+D+    + F  C++ + V+  F          +  FNM    L    +S  ++    
Sbjct: 432 LDMDKIYHASFFKACKKQRAVKEAFRFTKLILNPTMSTFNM----LMSVCASSQDIEGAR 491

Query: 179 GMVNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDG 238
           G++       ++ A+ K +TT+  +      +   ++VFH+M N+GVE N+HT+GALIDG
Sbjct: 492 GVLRLVQESGMT-ADCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDG 551

Query: 239 CARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC 264
           CARAGQVAKAFG YGI+RSK    DRVVF   +  C
Sbjct: 552 CARAGQVAKAFGAYGILRSKNVKPDRVVFNALISAC 582

[Close]
BLAST of Pay0000328 vs. TAIR 10
Match: AT3G07290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 2.1e-04
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 0 

Query: 202 LISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKDRV 255
           LI   + +F  M+  G +PNVHTY  LIDG  R G++ +A GV   M  KDR+
Sbjct: 316 LIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKM-VKDRI 367

[Close]
BLAST of Pay0000328 vs. TAIR 10
Match: AT1G20300.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.7e-04
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0 

Query: 203 ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM 249
           IS   +VF  M  AG+EPNV+TY  +ID   R GQ+++A  V+  M
Sbjct: 271 ISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADM 316

The following BLAST results are available for this feature:
BLAST of Pay0000328 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q0WLC62.1e-1737.18Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis t... [more]
BLAST of Pay0000328 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BKV61.1e-2141.24Pentatricopeptide repeat-containing protein MRL1 OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3C5X81.1e-2141.24pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Cucumis melo ... [more]
A0A6J1JHM66.2e-2040.21pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X1 ... [more]
A0A6J1JFL76.2e-2040.21pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X2 ... [more]
A0A0A0LLH28.1e-2044.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258850 PE=3 SV=1[more]
BLAST of Pay0000328 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008457640.12.3e-2141.24PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Cucu... [more]
XP_038901397.11.2e-2042.21pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X2 [Beni... [more]
XP_038901395.11.2e-2042.21pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 [Beni... [more]
XP_023512947.19.7e-2040.21pentatricopeptide repeat-containing protein MRL1, chloroplastic [Cucurbita pepo ... [more]
XP_022987004.11.3e-1940.21pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X1 ... [more]
BLAST of Pay0000328 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G34830.11.5e-1837.18Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G07290.12.1e-0445.28Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G20300.12.7e-0445.65Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 166..280
e-value: 5.6E-13
score: 50.6
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 217..248
e-value: 1.4E-7
score: 31.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 223..252
e-value: 5.6E-6
score: 24.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 221..255
score: 10.062531
NoneNo IPR availablePANTHERPTHR47935PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTICcoord: 203..257

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0000328.1Pay0000328.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding