Pay0000296 (gene) Melon (Payzawat) v1

Overview
NamePay0000296
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionglycine-rich cell wall structural protein 1.0-like
Locationchr06: 3525648 .. 3526399 (-)
RNA-Seq ExpressionPay0000296
SyntenyPay0000296
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTAATTTTAATTTTAGTGAGCCATAAGTACTTTGGAGGGTGAAATTGGCAACGTATTCTCACGTACATAGAAAAGTTTATACCGAGACATAAACGAAATTGAATTAGATTAAAACATGAAATTCAACTAAAGTAGTACGCATTAAATGTACGTCGGAGGAACCAGATCAGTTGGAGACGGCGACGTCAATATCTCTGGACCAAAAGGTCTAGGTGGACCAGGAGGTCTAGGTGGCATCTCCTCCGGTGGCGACGGCGGTAAAATTTCTGGTCCTGGTACTGGTGAACCAGGCCATGGTGGCTCTATATCTGGAGGCTTACGGGGTGGTACCGGTACATCGATTCCCGGAGGAGACGGCGACGGAGGCTTCGGAAACTCTGGTCCTGGCGGCCGGGGATCAGGAAAATCCGGCTCCGGAGTTATCGACGGAAGCTCCGACGGAGTGCTTGGGTCAATCTCCGGAGGAGGCGAAAATTGTGGAATTTCGAGGGGTAAAGAAGGCGGTGGAACCGGGCGGCTTTTGGGAAACTCCGGCGAGTCACACGAAAGCATAGAGCGCGAGAGAGACGTGGAGTATTCATTGAAGGAGAGGAATTGGGAATGAGAAAAGAGGAGAGGAGTGACGAAATTGGAAGAAGAAGGGTAATAACTAGGAAGCGTTTTTGTGATGAGAGTGAAAGAGAATAGGGAGGTGCAGGACATTCTTACGGCCATGGCAGTTCTTCTGTGGAAGCTGAAACGTTATTTTAG

mRNA sequence

GTTTAATTTTAATTTTAGTGAGCCATAAGTACTTTGGAGGGTGAAATTGGCAACGTATTCTCACGTACATAGAAAAGTTTATACCGAGACATAAACGAAATTGAATTAGATTAAAACATGAAATTCAACTAAAGTAGTACGCATTAAATGTACGTCGGAGGAACCAGATCAGTTGGAGACGGCGACGTCAATATCTCTGGACCAAAAGGTCTAGGTGGACCAGGAGGTCTAGGTGGCATCTCCTCCGGTGGCGACGGCGGTAAAATTTCTGGTCCTGGTACTGGTGAACCAGGCCATGGTGGCTCTATATCTGGAGGCTTACGGGGTGGTACCGGTACATCGATTCCCGGAGGAGACGGCGACGGAGGCTTCGGAAACTCTGGTCCTGGCGGCCGGGGATCAGGAAAATCCGGCTCCGGAGTTATCGACGGAAGCTCCGACGGAGTGCTTGGGTCAATCTCCGGAGGAGGCGAAAATTGTGGAATTTCGAGGGGTAAAGAAGGCGGTGGAACCGGGCGGCTTTTGGGAAACTCCGGCGAGTCACACGAAAGCATAGAGCGCGAGAGAGACGTGGAGTATTCATTGAAGGAGAGGAATTGGGAATGAGAAAAGAGGAGAGGAGTGACGAAATTGGAAGAAGAAGGGTAATAACTAGGAAGCGTTTTTGTGATGAGAGTGAAAGAGAATAGGGAGGTGCAGGACATTCTTACGGCCATGGCAGTTCTTCTGTGGAAGCTGAAACGTTATTTTAG

Coding sequence (CDS)

ATGTACGTCGGAGGAACCAGATCAGTTGGAGACGGCGACGTCAATATCTCTGGACCAAAAGGTCTAGGTGGACCAGGAGGTCTAGGTGGCATCTCCTCCGGTGGCGACGGCGGTAAAATTTCTGGTCCTGGTACTGGTGAACCAGGCCATGGTGGCTCTATATCTGGAGGCTTACGGGGTGGTACCGGTACATCGATTCCCGGAGGAGACGGCGACGGAGGCTTCGGAAACTCTGGTCCTGGCGGCCGGGGATCAGGAAAATCCGGCTCCGGAGTTATCGACGGAAGCTCCGACGGAGTGCTTGGGTCAATCTCCGGAGGAGGCGAAAATTGTGGAATTTCGAGGGGTAAAGAAGGCGGTGGAACCGGGCGGCTTTTGGGAAACTCCGGCGAGTCACACGAAAGCATAGAGCGCGAGAGAGACGTGGAGTATTCATTGAAGGAGAGGAATTGGGAATGA

Protein sequence

MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRGGTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGGGTGRLLGNSGESHESIERERDVEYSLKERNWE
Homology
[Close]
BLAST of Pay0000296 vs. ExPASy TrEMBL
Match: A0A1S4DSJ3 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC107990388 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.0e-69
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG
Sbjct: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 153
           GTGRLLGNSGESHESIERERDVEYSLKERNWE
Sbjct: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 152

[Close]
BLAST of Pay0000296 vs. ExPASy TrEMBL
Match: A0A5A7U1W0 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G005620 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.9e-67
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYVGGT+SVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG
Sbjct: 1   MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 153
           GTGRLLGNSGES ESIERERDVEYSLKERNWE
Sbjct: 121 GTGRLLGNSGESPESIERERDVEYSLKERNWE 152

[Close]
BLAST of Pay0000296 vs. NCBI nr
Match: XP_016898954.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG
Sbjct: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 153
           GTGRLLGNSGESHESIERERDVEYSLKERNWE
Sbjct: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 152

[Close]
BLAST of Pay0000296 vs. NCBI nr
Match: KAA0049320.1 (glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 4.0e-67
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYVGGT+SVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG
Sbjct: 1   MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 153
           GTGRLLGNSGES ESIERERDVEYSLKERNWE
Sbjct: 121 GTGRLLGNSGESPESIERERDVEYSLKERNWE 152

[Close]
BLAST of Pay0000296 vs. NCBI nr
Match: XP_011652754.1 (glycine-rich cell wall structural protein-like [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 4.7e-52
Identity = 130/152 (85.53%), Postives = 134/152 (88.16%), Query Frame = 0 

Query: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYV  T+  GD DVNISGPKGLGG GGLGG SSGGDGGKISG GTGEPGHGGSISGGLRG
Sbjct: 1   MYVRATKPGGDADVNISGPKGLGGLGGLGGTSSGGDGGKISGSGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           G+GTSIPGGDG+GGFGNSGPGG G G SGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GSGTSIPGGDGNGGFGNSGPGGLG-GNSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 153
           GTGR+ GNSGES ES E ERD  YSLK RNWE
Sbjct: 121 GTGRISGNSGESPESRESERDAGYSLKGRNWE 151

The following BLAST results are available for this feature:
BLAST of Pay0000296 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0000296 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DSJ36.0e-69100.00glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO... [more]
A0A5A7U1W01.9e-6798.68Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O... [more]
BLAST of Pay0000296 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016898954.11.2e-68100.00PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo][more]
KAA0049320.14.0e-6798.68glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa][more]
XP_011652754.14.7e-5285.53glycine-rich cell wall structural protein-like [Cucumis sativus][more]
BLAST of Pay0000296 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0000296.1Pay0000296.1mRNA