Pay0000260 (gene) Melon (Payzawat) v1

Overview


Name	Pay0000260
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Location	chr11: 17242322 .. 17245231 (+)
RNA-Seq Expression	Pay0000260
Synteny	Pay0000260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGGTGGTGATGTGAGTCAGATCACGTGGCAGCAGTTCAAGGAGAGTTTCTATGCGAAATTCTTCTCTGCCAGTTTGAGAGATGCCAAGCGGCAGGAGTTCCTGAACTTAGAGCAGGGTGACATGACAGTGGAGCAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCCCGAGATGATAGCGACCGAGGCGGCCAGAGCTGATAAGTTTGTTAGAGGCCTCAGACTGGACATTCAGGGTTTGGTCCGAGCTTTCAGACCCGCTACTCATGCCGATGCACTGCGCCTGGCAGTGGATCTCAGTTTACAGGAGAGGGCCAACTCGTCTAAGACCGCTGGTAGAGGTTCGACGTCGGGACAGAAGAGGAAGGCTGAGCAGCAGCCTGTTCCAGTGCCACAGCGGAATTTCAGACCAGGTGGTGAGTTTCGCAGCTTCCAGCAGAAACCTTTTGAGGCAGGGGAGGCTGCCAGAGGAAAGCCGTTGTGTACCACTTGTGGGAAGCACCATCTGGGCCGTTGCTTATTCGGGACCAGGACCTGCTTTAAGTGCAGGCAAGAGGGTCATACAGCTGATAGATGCCCGTTGAGAGTCACGGGGATCGCGCAGAATCAGGGAGCAGGTGCTCCACATCAGGGTAGAGTCTTTGCTACCAACAGGACTGAGGCTGAGAAGGCAGGCACAGTAGTGACAGGTACGCTCCCAGTGTTGGGGCATTACGCCTTAGTTTTGTTTGATTCGGGTTCGTCGCATTCTTTTATCTCTTCCGCATTTGTGTCGCATGCCCGCTTAGAGGTAGAGCCCTTACACCATGTTCTGTCAGTATCTACTCCTTCCGGGGAATGTATGTTGTCGAAGGAAAAGGTGAAGGCATGTCAGATTGAGATAGCAGGTCATGTGATTGAAGTAACACTGATAGTTCTGGATATGCTGGACTTTGATGTAATCCTGGGTATGGATTGGTTGGCCGTTTAACCACGCCAGTATAGATTGTTCACGTAAGGAGGTAACGTTTAACCCTCCCTCGATGGCCAGTTTTAAATTTAAGGGAGGAGGGTCAAAGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGCCGATGTATCCCTGTCATCAGAACCAGTAGTGAGGGACTATCCGGATGTCTTTCCTGAGGAACTTCCAGGGTTACCTCCGCACAGGGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTACAGAATGGCCCCCGCAGAATTGAAAGAACTGAAGGTACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTCGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATTGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGAATTAAGGATGAGGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCGACGATATTTTGATATACTCCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGATGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGCTATTATCGACGGTTTGTGGAGAACTTTTCCGTATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGACCCTTAAACAGAAGCTAGTTACCGCGCCGGTTCTTACGGTACCTGATGGTTCTGGCAGTTTCGTGATTTATAGTGATGCTTCCAAGAAGGGTCTGGGTTGTGTTTTGATGCAGCAGGGTAAGGTGGTCGCTTATGCGTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATCTAGAGTTGGCAGCAGTGGTTTTTGCTTTGAAAATATGGAGGCATTATTTATATGGTGAAAAGATACAGATATTCACAGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAAGAATTGAATATGAGACAGCGAAGGTGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCGAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCGGCAGCACTTATTACCCGACAGGCCCCATTGCATCGGGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGTGCAGTTACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAGAAGATCATTGATGCTCAGAGTAACGATCCTTATCTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAACGGCTGAGTTCTCGTTATCCTCTGATGGTGGACTGTTGTTTGAGAGACGCCTCTGTGTTCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACTTAAGCGGGTTTATTGGTGGCGTAACATGA

mRNA sequence

ATGCTAGGTGGTGATGTGAATATCCCTTGCCCAGGATTGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCGAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCGGCAGCACTTATTACCCGACAGGCCCCATTGCATCGGGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGTGCAGTTACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAGAAGATCATTGATGCTCAGAGTAACGATCCTTATCTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAACGGCTGAGTTCTCGTTATCCTCTGATGGTGGACTGTTGTTTGAGAGACGCCTCTGTGTTCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACTTAAGCGGGTTTATTGGTGGCGTAACATGA

Coding sequence (CDS)

ATGCTAGGTGGTGATGTGAATATCCCTTGCCCAGGATTGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCGAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCGGCAGCACTTATTACCCGACAGGCCCCATTGCATCGGGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGTGCAGTTACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAGAAGATCATTGATGCTCAGAGTAACGATCCTTATCTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAACGGCTGAGTTCTCGTTATCCTCTGATGGTGGACTGTTGTTTGAGAGACGCCTCTGTGTTCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACTTAAGCGGGTTTATTGGTGGCGTAACATGA

Protein sequence

MLGGDVNIPCPGLTIYLTSYREPQCSLRLIFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLSGFIGGVT

Homology

[Close]

BLAST of Pay0000260 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.4e-05
Identity = 34/141 (24.11%), Postives = 67/141 (47.52%), Query Frame = 0


Query: 30  IFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQ 89
           +F++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          
Sbjct: 806 LFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINF-------- 865

Query: 90  LAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERR--LCVPSD 149
           + Q+++    + +++   +ND  L+    L    +  E ++    GLL   +  + +P+D
Sbjct: 866 VNQISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPND 925

Query: 150 SAVKTELLSEAHSSPFSMHPG 169
           + +   ++ + H     +HPG
Sbjct: 926 TQLTRTIIKKYHEEGKLIHPG 929

[Close]

BLAST of Pay0000260 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.4e-05
Identity = 34/141 (24.11%), Postives = 67/141 (47.52%), Query Frame = 0


Query: 30  IFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQ 89
           +F++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          
Sbjct: 806 LFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINF-------- 865

Query: 90  LAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERR--LCVPSD 149
           + Q+++    + +++   +ND  L+    L    +  E ++    GLL   +  + +P+D
Sbjct: 866 VNQISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPND 925

Query: 150 SAVKTELLSEAHSSPFSMHPG 169
           + +   ++ + H     +HPG
Sbjct: 926 TQLTRTIIKKYHEEGKLIHPG 929

[Close]

BLAST of Pay0000260 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.4e-05
Identity = 34/141 (24.11%), Postives = 67/141 (47.52%), Query Frame = 0


Query: 30  IFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQ 89
           +F++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          
Sbjct: 806 LFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINF-------- 865

Query: 90  LAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERR--LCVPSD 149
           + Q+++    + +++   +ND  L+    L    +  E ++    GLL   +  + +P+D
Sbjct: 866 VNQISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPND 925

Query: 150 SAVKTELLSEAHSSPFSMHPG 169
           + +   ++ + H     +HPG
Sbjct: 926 TQLTRTIIKKYHEEGKLIHPG 929

[Close]

BLAST of Pay0000260 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.4e-05
Identity = 34/141 (24.11%), Postives = 67/141 (47.52%), Query Frame = 0


Query: 30  IFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQ 89
           +F++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          
Sbjct: 806 LFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINF-------- 865

Query: 90  LAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERR--LCVPSD 149
           + Q+++    + +++   +ND  L+    L    +  E ++    GLL   +  + +P+D
Sbjct: 866 VNQISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPND 925

Query: 150 SAVKTELLSEAHSSPFSMHPG 169
           + +   ++ + H     +HPG
Sbjct: 926 TQLTRTIIKKYHEEGKLIHPG 929

[Close]

BLAST of Pay0000260 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.4e-05
Identity = 34/141 (24.11%), Postives = 67/141 (47.52%), Query Frame = 0


Query: 30  IFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQ 89
           +F++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          
Sbjct: 806 LFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINF-------- 865

Query: 90  LAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERR--LCVPSD 149
           + Q+++    + +++   +ND  L+    L    +  E ++    GLL   +  + +P+D
Sbjct: 866 VNQISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPND 925

Query: 150 SAVKTELLSEAHSSPFSMHPG 169
           + +   ++ + H     +HPG
Sbjct: 926 TQLTRTIIKKYHEEGKLIHPG 929

[Close]

BLAST of Pay0000260 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 8.3e-73
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 29   LIFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 88
            L  VKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM
Sbjct: 1210 LELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 1269

Query: 89   QLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 148
            QLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS
Sbjct: 1270 QLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 1329

Query: 149  AVKTELLSEAHSSPFSMHPGSTKMYQDL 177
            AVKTELLSEAHSSPFSMHPGSTKMYQDL
Sbjct: 1330 AVKTELLSEAHSSPFSMHPGSTKMYQDL 1357

[Close]

BLAST of Pay0000260 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 8.3e-73
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 29   LIFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 88
            L  VKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM
Sbjct: 903  LELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 962

Query: 89   QLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 148
            QLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS
Sbjct: 963  QLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 1022

Query: 149  AVKTELLSEAHSSPFSMHPGSTKMYQDL 177
            AVKTELLSEAHSSPFSMHPGSTKMYQDL
Sbjct: 1023 AVKTELLSEAHSSPFSMHPGSTKMYQDL 1050

[Close]

BLAST of Pay0000260 vs. ExPASy TrEMBL
Match: A0A5A7UDJ5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00830 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.1e-72
Identity = 143/148 (96.62%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 29  LIFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 88
           L   KDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM
Sbjct: 213 LELAKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 272

Query: 89  QLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 148
           QLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLC+PSDS
Sbjct: 273 QLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCIPSDS 332

Query: 149 AVKTELLSEAHSSPFSMHPGSTKMYQDL 177
           AVKTELLSEAHSSPFSMHPGSTKMYQDL
Sbjct: 333 AVKTELLSEAHSSPFSMHPGSTKMYQDL 360

[Close]

BLAST of Pay0000260 vs. ExPASy TrEMBL
Match: A0A5A7U8T5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001340 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.1e-72
Identity = 144/148 (97.30%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 29  LIFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 88
           L  VKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM
Sbjct: 783 LELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 842

Query: 89  QLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 148
           QLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQ AEFSLSSDGGLLFERRLCVPSDS
Sbjct: 843 QLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGLLFERRLCVPSDS 902

Query: 149 AVKTELLSEAHSSPFSMHPGSTKMYQDL 177
           AVKTELLSEAHSSPFSMHPGSTKMYQDL
Sbjct: 903 AVKTELLSEAHSSPFSMHPGSTKMYQDL 930

[Close]

BLAST of Pay0000260 vs. ExPASy TrEMBL
Match: A0A5A7V8L8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00080 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.1e-72
Identity = 144/148 (97.30%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 29   LIFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 88
            L  VKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM
Sbjct: 1018 LELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 1077

Query: 89   QLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 148
            QLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQ AEFSLSSDGGLLFERRLCVPSDS
Sbjct: 1078 QLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGLLFERRLCVPSDS 1137

Query: 149  AVKTELLSEAHSSPFSMHPGSTKMYQDL 177
            AVKTELLSEAHSSPFSMHPGSTKMYQDL
Sbjct: 1138 AVKTELLSEAHSSPFSMHPGSTKMYQDL 1165

[Close]

BLAST of Pay0000260 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.1 bits (723), Expect = 1.7e-72
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 29   LIFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 88
            L  VKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM
Sbjct: 1210 LELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 1269

Query: 89   QLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 148
            QLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS
Sbjct: 1270 QLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 1329

Query: 149  AVKTELLSEAHSSPFSMHPGSTKMYQDL 177
            AVKTELLSEAHSSPFSMHPGSTKMYQDL
Sbjct: 1330 AVKTELLSEAHSSPFSMHPGSTKMYQDL 1357

[Close]

BLAST of Pay0000260 vs. NCBI nr
Match: KAA0051368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.1 bits (723), Expect = 1.7e-72
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 29   LIFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 88
            L  VKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM
Sbjct: 903  LELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 962

Query: 89   QLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 148
            QLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS
Sbjct: 963  QLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 1022

Query: 149  AVKTELLSEAHSSPFSMHPGSTKMYQDL 177
            AVKTELLSEAHSSPFSMHPGSTKMYQDL
Sbjct: 1023 AVKTELLSEAHSSPFSMHPGSTKMYQDL 1050

[Close]

BLAST of Pay0000260 vs. NCBI nr
Match: KAA0051744.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 6.5e-72
Identity = 144/148 (97.30%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 29  LIFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 88
           L  VKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM
Sbjct: 783 LELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 842

Query: 89  QLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 148
           QLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQ AEFSLSSDGGLLFERRLCVPSDS
Sbjct: 843 QLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGLLFERRLCVPSDS 902

Query: 149 AVKTELLSEAHSSPFSMHPGSTKMYQDL 177
           AVKTELLSEAHSSPFSMHPGSTKMYQDL
Sbjct: 903 AVKTELLSEAHSSPFSMHPGSTKMYQDL 930

[Close]

BLAST of Pay0000260 vs. NCBI nr
Match: KAA0062245.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 6.5e-72
Identity = 144/148 (97.30%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 29   LIFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 88
            L  VKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM
Sbjct: 1018 LELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 1077

Query: 89   QLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 148
            QLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQ AEFSLSSDGGLLFERRLCVPSDS
Sbjct: 1078 QLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGLLFERRLCVPSDS 1137

Query: 149  AVKTELLSEAHSSPFSMHPGSTKMYQDL 177
            AVKTELLSEAHSSPFSMHPGSTKMYQDL
Sbjct: 1138 AVKTELLSEAHSSPFSMHPGSTKMYQDL 1165

[Close]

BLAST of Pay0000260 vs. NCBI nr
Match: KAA0053280.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 6.5e-72
Identity = 143/148 (96.62%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 29  LIFVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 88
           L   KDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM
Sbjct: 213 LELAKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTM 272

Query: 89  QLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDS 148
           QLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLC+PSDS
Sbjct: 273 QLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCIPSDS 332

Query: 149 AVKTELLSEAHSSPFSMHPGSTKMYQDL 177
           AVKTELLSEAHSSPFSMHPGSTKMYQDL
Sbjct: 333 AVKTELLSEAHSSPFSMHPGSTKMYQDL 360

The following BLAST results are available for this feature:

BLAST of Pay0000260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	5.4e-05	24.11	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	5.4e-05	24.11	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	5.4e-05	24.11	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	5.4e-05	24.11	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	5.4e-05	24.11	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Pay0000260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPI1	8.3e-73	97.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7U7V9	8.3e-73	97.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UDJ5	3.1e-72	96.62	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00830 PE...	[more]
A0A5A7U8T5	3.1e-72	97.30	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]
A0A5A7V8L8	3.1e-72	97.30	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00080 PE...	[more]

BLAST of Pay0000260 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01613.1	1.7e-72	97.97	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051368.1	1.7e-72	97.97	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051744.1	6.5e-72	97.30	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062245.1	6.5e-72	97.30	pol protein [Cucumis melo var. makuwa]	[more]
KAA0053280.1	6.5e-72	96.62	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0000260 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0000260.1	Pay0000260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding