PI0029201 (gene) Melon (PI 482460) v1

Overview


Name	PI0029201
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr03: 1710262 .. 1710456 (-)
RNA-Seq Expression	PI0029201
Synteny	PI0029201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCAAACCCGCTCCCCCACCAAGTGCATGATTATCGATACCTCTCTCTTACGTGTCATCTTCTCATTTGTCCGTCACCGGTCGTCGGGATTCATAGCAACACCACCACCCACTAAAACAATATCTGTCTTTTTCCTCCATTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTTCTCTCTGCTTTCACTCGTAA

mRNA sequence

ATGCCGCAAACCCGCTCCCCCACCAAGTGCATGATTATCGATACCTCTCTCTTACGTGTCATCTTCTCATTTGTCCGTCACCGGTCGTCGGGATTCATAGCAACACCACCACCCACTAAAACAATATCTGTCTTTTTCCTCCATTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTTCTCTCTGCTTTCACTCGTAA

Coding sequence (CDS)

ATGCCGCAAACCCGCTCCCCCACCAAGTGCATGATTATCGATACCTCTCTCTTACGTGTCATCTTCTCATTTGTCCGTCACCGGTCGTCGGGATTCATAGCAACACCACCACCCACTAAAACAATATCTGTCTTTTTCCTCCATTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTTCTCTCTGCTTTCACTCGTAA

Protein sequence

MPQTRSPTKCMIIDTSLLRVIFSFVRHRSSGFIATPPPTKTISVFFLHSSSSSSSSPPSLCFHS

Homology

[Close]

BLAST of PI0029201 vs. ExPASy TrEMBL
Match: A0A0A0LL03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361410 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.4e-21
Identity = 59/66 (89.39%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1   MPQTRSPTKCMIIDTSLLRVIFSFVRHRSSGFIATPPPTKTISVFFL--HSSSSSSSSPP 60
           MPQTRSPTKCMIIDTSLLRVIF FVRHRSSGFIATPPPT+TISVFFL   SSSSSSSS  
Sbjct: 47  MPQTRSPTKCMIIDTSLLRVIFLFVRHRSSGFIATPPPTQTISVFFLLSSSSSSSSSSSS 106

Query: 61  SLCFHS 65
           SLCFHS
Sbjct: 107 SLCFHS 112

[Close]

BLAST of PI0029201 vs. NCBI nr
Match: KAE8652101.1 (hypothetical protein Csa_022635 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1   MPQTRSPTKCMIIDTSLLRVIFSFVRHRSSGFIATPPPTKTISVFFLH--SSSSSSSSPP 60
           MPQTRSPTKCMIIDTSLLRVIF FVRHRSSGFIATPPPT+TISVFFLH  SSSSSSSS  
Sbjct: 47  MPQTRSPTKCMIIDTSLLRVIFLFVRHRSSGFIATPPPTQTISVFFLHSSSSSSSSSSSS 106

Query: 61  SLCFHS 65
           SLCFHS
Sbjct: 107 SLCFHS 112

The following BLAST results are available for this feature:

BLAST of PI0029201 vs.


Match Name	E-value	Identity	Description

BLAST of PI0029201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL03	7.4e-21	89.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361410 PE=4 SV=1	[more]

BLAST of PI0029201 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652101.1	1.4e-21	90.91	hypothetical protein Csa_022635 [Cucumis sativus]	[more]

BLAST of PI0029201 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0029201.1	PI0029201.1	mRNA