PI0029162 (gene) Melon (PI 482460) v1

Overview


Name	PI0029162
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr06: 16251511 .. 16251984 (+)
RNA-Seq Expression	PI0029162
Synteny	PI0029162

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTTGGTTTGACTAATGCTCCTGCAGTATTTATGGATCTGATGAACAGGGTGTTCAAGGATTTCTTGGACACTTTTGTAATTGTGTTCATTGATGACATCTTGGTTTACTCCAAGACGGAGGCCGAGCATGAGGGTCATTTGCGCAAGGTCTTGGAGACTCTTCGAGCTAATCAATTGTCTACTAAGTTCTCGAAGTGTGAATTCTGGTTGAGACAGGTATCTTTCCTAGGCCATGTGGTGTCCAAGGATGGTGTTTCGGTGGATCCAGCAAAGATTGAAGCGGTCACCAATTGGTCCAGACCTTCCTCAGTTAGCGAGGTTCGTAGTTTTCTAGGTCTTGCAGGTTATTACCGCAGGTTTGTGGAGGACTTCTCCCGTATTGCTTCTCCTTTGACTCAATTGACTAGGAAGGGGACTCCATTTATTTGGAGTGAGGCTTGTGAGGATAGTTTCCAAATTCTCAAGTAG

mRNA sequence

ATGTCATTTGGTTTGACTAATGCTCCTGCAGTATTTATGGATCTGATGAACAGGGTGTTCAAGGATTTCTTGGACACTTTTGTAATTGTGTTCATTGATGACATCTTGGTTTACTCCAAGACGGAGGCCGAGCATGAGGGTCATTTGCGCAAGGTCTTGGAGACTCTTCGAGCTAATCAATTGTCTACTAAGTTCTCGAAGTGTGAATTCTGGTTGAGACAGGTATCTTTCCTAGGCCATGTGGTGTCCAAGGATGGTGTTTCGGTGGATCCAGCAAAGATTGAAGCGGTCACCAATTGGTCCAGACCTTCCTCAGTTAGCGAGGTTCGTAGTTTTCTAGGTCTTGCAGGTTATTACCGCAGGTTTGTGGAGGACTTCTCCCGTATTGCTTCTCCTTTGACTCAATTGACTAGGAAGGGGACTCCATTTATTTGGAGTGAGGCTTGTGAGGATAGTTTCCAAATTCTCAAGTAG

Coding sequence (CDS)

ATGTCATTTGGTTTGACTAATGCTCCTGCAGTATTTATGGATCTGATGAACAGGGTGTTCAAGGATTTCTTGGACACTTTTGTAATTGTGTTCATTGATGACATCTTGGTTTACTCCAAGACGGAGGCCGAGCATGAGGGTCATTTGCGCAAGGTCTTGGAGACTCTTCGAGCTAATCAATTGTCTACTAAGTTCTCGAAGTGTGAATTCTGGTTGAGACAGGTATCTTTCCTAGGCCATGTGGTGTCCAAGGATGGTGTTTCGGTGGATCCAGCAAAGATTGAAGCGGTCACCAATTGGTCCAGACCTTCCTCAGTTAGCGAGGTTCGTAGTTTTCTAGGTCTTGCAGGTTATTACCGCAGGTTTGTGGAGGACTTCTCCCGTATTGCTTCTCCTTTGACTCAATTGACTAGGAAGGGGACTCCATTTATTTGGAGTGAGGCTTGTGAGGATAGTTTCCAAATTCTCAAGTAG

Protein sequence

MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQLSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK

Homology

[Close]

BLAST of PI0029162 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-27
Identity = 54/141 (38.30%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
           M FGL NAPA F   MN + +  L+   +V++DDI+++S +  EH   ++ V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
           L  +  KCEF  ++ +FLGH+V+ DG+  +P K++A+ ++  P+   E+R+FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEDFSRIASPLTQLTRKGT 142
           +F+ +++ IA P+T   +K T
Sbjct: 453 KFIPNYADIAKPMTSCLKKRT 473

[Close]

BLAST of PI0029162 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-27
Identity = 58/139 (41.73%), Postives = 88/139 (63.31%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
           M FGL NAPA F   MN + +  L+   +V++DDI+V+S +  EH   L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
           L  +  KCEF  ++ +FLGHV++ DG+  +P KIEA+  +  P+   E+++FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEDFSRIASPLTQLTRK 140
           +F+ +F+ IA P+T+  +K
Sbjct: 454 KFIPNFADIAKPMTKCLKK 472

[Close]

BLAST of PI0029162 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.3e-27
Identity = 55/138 (39.86%), Postives = 88/138 (63.77%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
           + FGL NAPA+F  +++ + ++ +     V+IDDI+V+S+    H  +LR VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
           L     K  F   QV FLG++V+ DG+  DP K+ A++    P+SV E++ FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEDFSRIASPLTQLTR 139
           +F++D++++A PLT LTR
Sbjct: 370 KFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of PI0029162 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-25
Identity = 57/168 (33.93%), Postives = 96/168 (57.14%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
           + FGL NA ++F   ++ V ++ +     V++DD++++S+ E++H  H+  VL+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
           +     K  F+   V +LG +VSKDG   DP K++A+  +  P  V +VRSFLGLA YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVEDFSRIASPLTQLTR-----------KGTPFIWSEACEDSFQILK 158
            F++DF+ IA P+T + +           K  P  ++E   ++FQ L+
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLR 476

[Close]

BLAST of PI0029162 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-23
Identity = 51/157 (32.48%), Postives = 90/157 (57.32%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
           M +G++ APA F   +N +  +  ++ V+ ++DDIL++SK+E+EH  H++ VL+ L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
           L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P +  E+R FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK 158
           +F+   S++  PL  L +K   + W+     + + +K
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIK 690

[Close]

BLAST of PI0029162 vs. ExPASy TrEMBL
Match: A0A5A7SU25 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00200 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.3e-74
Identity = 138/157 (87.90%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
           MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE HL +VLETLRAN+
Sbjct: 713 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 772

Query: 61  LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
           L  KFSKCEFWLR+V+FLGHVVS++GVSVDPAKIEAVTNW RPS+VSE+RSFLGLAGYYR
Sbjct: 773 LYAKFSKCEFWLRKVTFLGHVVSREGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 832

Query: 121 RFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK 158
           RFVEDFSRIASPLTQLTRKGTPF+WS ACE SFQ LK
Sbjct: 833 RFVEDFSRIASPLTQLTRKGTPFVWSSACERSFQELK 869

[Close]

BLAST of PI0029162 vs. ExPASy TrEMBL
Match: A0A5A7UIB4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001140 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 138/157 (87.90%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
           MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE HL +VLETLRAN+
Sbjct: 188 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 247

Query: 61  LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
           L  KFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+RPS+VSE+RSFLGLAGYYR
Sbjct: 248 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 307

Query: 121 RFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK 158
           RFVEDFSRIASPLTQLTRKGTPF+WS ACE SFQ LK
Sbjct: 308 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELK 344

[Close]

BLAST of PI0029162 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 138/157 (87.90%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
           MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE HL +VLETLRAN+
Sbjct: 685 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61  LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
           L  KFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW RPS+VSE+RSFLGLAGYYR
Sbjct: 745 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121 RFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK 158
           RFVEDFSRIASPLTQLTRKGTPF+WS ACE SFQ LK
Sbjct: 805 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 841

[Close]

BLAST of PI0029162 vs. ExPASy TrEMBL
Match: A0A5D3BTN0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001560 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 138/157 (87.90%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
            MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE HL +VLETLRAN+
Sbjct: 1050 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 1109

Query: 61   LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
            L  KFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+RPS+VSE+RSFLGLAGYYR
Sbjct: 1110 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 1169

Query: 121  RFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK 158
            RFVEDFSRIASPLTQLTRKGTPF+WS ACE SFQ LK
Sbjct: 1170 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELK 1206

[Close]

BLAST of PI0029162 vs. ExPASy TrEMBL
Match: A0A5A7VMR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00890 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 138/157 (87.90%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
           MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE HL +VLETLRAN+
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
           L  KFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW RPS+VSE+RSFLGLAGYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK 158
           RFVEDFSRIASPLTQLTRKGTPF+WS ACE SFQ LK
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 677

[Close]

BLAST of PI0029162 vs. NCBI nr
Match: KAA0033486.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 286.2 bits (731), Expect = 1.7e-73
Identity = 138/157 (87.90%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
           MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE HL +VLETLRAN+
Sbjct: 713 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 772

Query: 61  LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
           L  KFSKCEFWLR+V+FLGHVVS++GVSVDPAKIEAVTNW RPS+VSE+RSFLGLAGYYR
Sbjct: 773 LYAKFSKCEFWLRKVTFLGHVVSREGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 832

Query: 121 RFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK 158
           RFVEDFSRIASPLTQLTRKGTPF+WS ACE SFQ LK
Sbjct: 833 RFVEDFSRIASPLTQLTRKGTPFVWSSACERSFQELK 869

[Close]

BLAST of PI0029162 vs. NCBI nr
Match: TYK20443.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 138/157 (87.90%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
            MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE HL +VLETLRAN+
Sbjct: 1049 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 1108

Query: 61   LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
            L  KFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+RPS+VSE+RSFLGLAGYYR
Sbjct: 1109 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 1168

Query: 121  RFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK 158
            RFVEDFSRIASPLTQLTRKGTPF+WS ACE SFQ LK
Sbjct: 1169 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELK 1205

[Close]

BLAST of PI0029162 vs. NCBI nr
Match: KAA0025998.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 138/157 (87.90%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
           MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE HL +VLETLRAN+
Sbjct: 713 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 772

Query: 61  LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
           L  KFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+RPS+VSE+RSFLGLAGYYR
Sbjct: 773 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 832

Query: 121 RFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK 158
           RFVEDFSRIASPLTQLTRKGTPF+WS ACE SFQ LK
Sbjct: 833 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELK 869

[Close]

BLAST of PI0029162 vs. NCBI nr
Match: KAA0046571.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 138/157 (87.90%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
           MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE HL +VLETLRAN+
Sbjct: 713 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 772

Query: 61  LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
           L  KFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+RPS+VSE+RSFLGLAGYYR
Sbjct: 773 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 832

Query: 121 RFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK 158
           RFVEDFSRIASPLTQLTRKGTPF+WS ACE SFQ LK
Sbjct: 833 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELK 869

[Close]

BLAST of PI0029162 vs. NCBI nr
Match: TYK01576.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 138/157 (87.90%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEGHLRKVLETLRANQ 60
            MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE HL +VLETLRAN+
Sbjct: 1050 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 1109

Query: 61   LSTKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSRPSSVSEVRSFLGLAGYYR 120
            L  KFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+RPS+VSE+RSFLGLAGYYR
Sbjct: 1110 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 1169

Query: 121  RFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK 158
            RFVEDFSRIASPLTQLTRKGTPF+WS ACE SFQ LK
Sbjct: 1170 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELK 1206

[Close]

BLAST of PI0029162 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 4.3e-22
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 48  HLRKVLETLRANQLSTKFSKCEFWLRQVSFLG--HVVSKDGVSVDPAKIEAVTNWSRPSS 107
           HL  VL+    +Q      KC F   Q+++LG  H++S +GVS DPAK+EA+  W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEVRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFIWSEACEDSFQILK 158
            +E+R FLGL GYYRRFV+++ +I  PLT+L +K +   W+E    +F+ LK
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALK 113

The following BLAST results are available for this feature:

BLAST of PI0029162 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.1e-27	38.30	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.1e-27	41.73	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	4.3e-27	39.86	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	3.1e-25	33.93	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	2.2e-23	32.48	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of PI0029162 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SU25	8.3e-74	87.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26...	[more]
A0A5A7UIB4	1.1e-73	87.90	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001140 P...	[more]
A0A5A7V4E4	1.1e-73	87.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5D3BTN0	1.1e-73	87.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7VMR4	1.1e-73	87.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]

BLAST of PI0029162 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033486.1	1.7e-73	87.90	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK20443.1	2.2e-73	87.90	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025998.1	2.2e-73	87.90	pol protein [Cucumis melo var. makuwa]	[more]
KAA0046571.1	2.2e-73	87.90	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK01576.1	2.2e-73	87.90	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0029162 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	4.3e-22	42.86	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 3.1E-16 score: 59.5
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 9.388092
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..157 e-value: 1.7E-25 score: 90.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..88 e-value: 7.0E-34 score: 118.6
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..157
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..157
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 6.43194E-38 score: 125.786
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0029162.1	PI0029162.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding