PI0029074 (gene) Melon (PI 482460) v1

Overview
NamePI0029074
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr08: 7018788 .. 7018952 (+)
RNA-Seq ExpressionPI0029074
SyntenyPI0029074
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAACATTGGTATACCGAATGATATCGATGAGGGTGATTCGACATATGCAACAACTATAGGTGACGACATTCACTACATTGAGACCTCGAACGAATGGAGCCAATGGGGGGATGATCTGGCTGAAGAAATGTTTAGTGAATGGGAGTTACATGCTCATTAG

mRNA sequence

ATGACAAACATTGGTATACCGAATGATATCGATGAGGGTGATTCGACATATGCAACAACTATAGGTGACGACATTCACTACATTGAGACCTCGAACGAATGGAGCCAATGGGGGGATGATCTGGCTGAAGAAATGTTTAGTGAATGGGAGTTACATGCTCATTAG

Coding sequence (CDS)

ATGACAAACATTGGTATACCGAATGATATCGATGAGGGTGATTCGACATATGCAACAACTATAGGTGACGACATTCACTACATTGAGACCTCGAACGAATGGAGCCAATGGGGGGATGATCTGGCTGAAGAAATGTTTAGTGAATGGGAGTTACATGCTCATTAG

Protein sequence

MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELHAH
Homology
BLAST of PI0029074 vs. ExPASy TrEMBL
Match: A0A5D3CAK2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G001080 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.8e-15
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1   MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH 53
           MTN  I ++IDE DST+ATT  DDIHYIETSNEWSQW DDLAEEMF+EWELH
Sbjct: 243 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELH 294

BLAST of PI0029074 vs. ExPASy TrEMBL
Match: A0A5A7UB39 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00320 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.8e-15
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1   MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH 53
           MTN  I ++IDE DST+ATT  DDIHYIETSNEWSQW DDLAEEMF+EWELH
Sbjct: 243 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELH 294

BLAST of PI0029074 vs. ExPASy TrEMBL
Match: A0A5A7UFY9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001210 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 1   MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH 53
           MTNI I +DIDE DST+ATT GDDI+YIET+NEW+QW D+LAEEMFS+WELH
Sbjct: 156 MTNIDIEDDIDEVDSTHATTAGDDINYIETTNEWTQWKDELAEEMFSDWELH 207

BLAST of PI0029074 vs. ExPASy TrEMBL
Match: A0A5A7VCK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00700 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-14
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 1   MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWEL 52
           MTN  I ++IDE DST+ATT+ DDIHYIETSNEWSQW DDLAEEMF+EWEL
Sbjct: 335 MTNFDIEDNIDEVDSTHATTVADDIHYIETSNEWSQWRDDLAEEMFTEWEL 385

BLAST of PI0029074 vs. ExPASy TrEMBL
Match: A0A5D3BCB2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00180 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-14
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELHAH 55
          MTN  IP+DIDE  S++ATT+GDDIHY+ETSNEWS+W D+L +EMFS+WEL  H
Sbjct: 1  MTNFDIPDDIDEAYSSHATTVGDDIHYVETSNEWSRWRDELVDEMFSDWELRNH 54

BLAST of PI0029074 vs. NCBI nr
Match: TYK08565.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1   MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH 53
           MTN  I ++IDE DST+ATT  DDIHYIETSNEWSQW DDLAEEMF+EWELH
Sbjct: 243 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELH 294

BLAST of PI0029074 vs. NCBI nr
Match: KAA0050781.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1   MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH 53
           MTN  I ++IDE DST+ATT  DDIHYIETSNEWSQW DDLAEEMF+EWELH
Sbjct: 243 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELH 294

BLAST of PI0029074 vs. NCBI nr
Match: KAA0053146.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01550.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 3.1e-14
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 1   MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH 53
           MTNI I +DIDE DST+ATT GDDI+YIET+NEW+QW D+LAEEMFS+WELH
Sbjct: 156 MTNIDIEDDIDEVDSTHATTAGDDINYIETTNEWTQWKDELAEEMFSDWELH 207

BLAST of PI0029074 vs. NCBI nr
Match: KAA0065893.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 4.0e-14
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 1   MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWEL 52
           MTN  I ++IDE DST+ATT+ DDIHYIETSNEWSQW DDLAEEMF+EWEL
Sbjct: 335 MTNFDIEDNIDEVDSTHATTVADDIHYIETSNEWSQWRDDLAEEMFTEWEL 385

BLAST of PI0029074 vs. NCBI nr
Match: TYK27175.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 5.3e-14
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0

Query: 1   MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWEL 52
           MTN  I ++IDE DST+ATT  DDIHYIETSNEWSQW DDLAEEMFSEWEL
Sbjct: 209 MTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSEWEL 259

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CAK28.8e-1578.85Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UB398.8e-1578.85Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UFY91.5e-1476.92Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7VCK92.0e-1478.43Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BCB22.6e-1468.52Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK08565.11.8e-1478.85retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050781.11.8e-1478.85retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0053146.13.1e-1476.92putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01550.1 putative nucleas... [more]
KAA0065893.14.0e-1478.43retrotransposon protein [Cucumis melo var. makuwa][more]
TYK27175.15.3e-1480.39retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0029074.1PI0029074.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding