PI0029049 (gene) Melon (PI 482460) v1

Overview
NamePI0029049
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr04: 22507917 .. 22508696 (-)
RNA-Seq ExpressionPI0029049
SyntenyPI0029049
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGACGGTGAACAACCGCAATTCGAACTTGACCCTGAAATTGAGCGAACTTTTCGGCGTAATAGGCAAAGAGCTAGGCAGAGACAAGCAAGAAGAATGGAAAACAATAACAGAAATGCCCCTCCGCCGCATGCTGCCCTAGAACCAAATGCCGCCTACATGGCACATGACTTGGATAGGCCGATTAGAACTTATGCGGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGCGAAAACGCTAGGTTTGAAATCAAACCTGTCATGCTTCAGATGATTCAGAATGTCGGACAATTCGACGGTCACCCTGGGGAGGATCCACACGAGCATATTAGGAATTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATCTCACCTGAAGAATTGAGGTTCGCTCTCTTCCTGTTAACTCTGAGGGATGAGGCGAAGAGGTGGGCCAACGCCTTGGAAGATGGTGAGGTGGGAACGTGGGACCAATTAATAGAGAAATTTATGAAGAAATTTTTCCCATCTCACAAAAATGCCAGAAGAAGGAAGGAGCTTATGGGCTTCCAGCAGAAGGATAGAGAAAACCTACATGACGCGTGGAGTAGGTTTAAGAGGATGGTGAAAGCATCCCCCCACAATGGCATTCCTGAATGCATATTGATGGAGGTTTTCTATTTTGGGCTAAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGCAGTATGCTAAAGAGCTCCTACAACCAGATTAAGGCGACCTGA

mRNA sequence

ATGAGTGACGGTGAACAACCGCAATTCGAACTTGACCCTGAAATTGAGCGAACTTTTCGGCGTAATAGGCAAAGAGCTAGGCAGAGACAAGCAAGAAGAATGGAAAACAATAACAGAAATGCCCCTCCGCCGCATGCTGCCCTAGAACCAAATGCCGCCTACATGGCACATGACTTGGATAGGCCGATTAGAACTTATGCGGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGCGAAAACGCTAGGTTTGAAATCAAACCTGTCATGCTTCAGATGATTCAGAATGTCGGACAATTCGACGGTCACCCTGGGGAGGATCCACACGAGCATATTAGGAATTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATCTCACCTGAAGAATTGAGGTTCGCTCTCTTCCTGTTAACTCTGAGGGATGAGGCGAAGAGGTGGGCCAACGCCTTGGAAGATGGTGAGGTGGGAACGTGGGACCAATTAATAGAGAAATTTATGAAGAAATTTTTCCCATCTCACAAAAATGCCAGAAGAAGGAAGGAGCTTATGGGCTTCCAGCAGAAGGATAGAGAAAACCTACATGACGCGTGGAGTAGGTTTAAGAGGATGGTGAAAGCATCCCCCCACAATGGCATTCCTGAATGCATATTGATGGAGGTTTTCTATTTTGGGCTAAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGCAGTATGCTAAAGAGCTCCTACAACCAGATTAAGGCGACCTGA

Coding sequence (CDS)

ATGAGTGACGGTGAACAACCGCAATTCGAACTTGACCCTGAAATTGAGCGAACTTTTCGGCGTAATAGGCAAAGAGCTAGGCAGAGACAAGCAAGAAGAATGGAAAACAATAACAGAAATGCCCCTCCGCCGCATGCTGCCCTAGAACCAAATGCCGCCTACATGGCACATGACTTGGATAGGCCGATTAGAACTTATGCGGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGCGAAAACGCTAGGTTTGAAATCAAACCTGTCATGCTTCAGATGATTCAGAATGTCGGACAATTCGACGGTCACCCTGGGGAGGATCCACACGAGCATATTAGGAATTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATCTCACCTGAAGAATTGAGGTTCGCTCTCTTCCTGTTAACTCTGAGGGATGAGGCGAAGAGGTGGGCCAACGCCTTGGAAGATGGTGAGGTGGGAACGTGGGACCAATTAATAGAGAAATTTATGAAGAAATTTTTCCCATCTCACAAAAATGCCAGAAGAAGGAAGGAGCTTATGGGCTTCCAGCAGAAGGATAGAGAAAACCTACATGACGCGTGGAGTAGGTTTAAGAGGATGGTGAAAGCATCCCCCCACAATGGCATTCCTGAATGCATATTGATGGAGGTTTTCTATTTTGGGCTAAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGCAGTATGCTAAAGAGCTCCTACAACCAGATTAAGGCGACCTGA

Protein sequence

MSDGEQPQFELDPEIERTFRRNRQRARQRQARRMENNNRNAPPPHAALEPNAAYMAHDLDRPIRTYAAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQNVGQFDGHPGEDPHEHIRNFYSICASFHMPGISPEELRFALFLLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKFFPSHKNARRRKELMGFQQKDRENLHDAWSRFKRMVKASPHNGIPECILMEVFYFGLNKATQQTADAVFVGSMLKSSYNQIKAT
Homology
BLAST of PI0029049 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.1e-49
Identity = 99/205 (48.29%), Postives = 129/205 (62.93%), Query Frame = 0

Query: 51  NAAYMAHDLDRPIRTYAAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQNVGQFDGHPG 110
           N   +A D  R IR YAAP     NPGI  P   +  +FE+KPVM QM+Q VGQF G P 
Sbjct: 11  NPIILADDRARAIREYAAPMFNELNPGIVRPEI-QAPQFELKPVMFQMLQTVGQFSGMPT 70

Query: 111 EDPHEHIRNFYSICASFHMPGISPEELRFALFLLTLRDEAKRWANALEDGEVGTWDQLIE 170
           EDPH H+R+F  +  SF + G+S E LR  LF  +LRD A+ W N L    V  W+ L E
Sbjct: 71  EDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNWNDLAE 130

Query: 171 KFMKKFFPSHKNARRRKELMGFQQKDRENLHDAWSRFKRMVKASPHNGIPECILMEVFYF 230
           KF++K+FP  +NA+ R E+M FQQ + E+  DAW RFK +++  PH+GIP CI ME FY 
Sbjct: 131 KFLRKYFPPTRNAKFRSEIMSFQQLEDESTSDAWERFKELLRKCPHHGIPHCIQMETFYN 190

Query: 231 GLNKATQQTADAVFVGSMLKSSYNQ 256
           GLN A++   DA   G++L  SYN+
Sbjct: 191 GLNAASRMVLDASANGAILSKSYNE 214

BLAST of PI0029049 vs. ExPASy TrEMBL
Match: A0A6J1H7E4 (uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC111461168 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 7.6e-48
Identity = 95/205 (46.34%), Postives = 129/205 (62.93%), Query Frame = 0

Query: 51  NAAYMAHDLDRPIRTYAAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQNVGQFDGHPG 110
           NA  +A D +R IR YA P +   NP I  P   +   FE+KPVM QM+Q +GQF G P 
Sbjct: 31  NAIQLADDRERAIRAYAHPAVDELNPCIIRPEM-QATTFELKPVMFQMLQTIGQFHGLPS 90

Query: 111 EDPHEHIRNFYSICASFHMPGISPEELRFALFLLTLRDEAKRWANALEDGEVGTWDQLIE 170
           EDPH H+++F  +  SF   G+  + +R +LF  +LRD AK W N L    + +W+ L E
Sbjct: 91  EDPHLHLKSFLGVSDSFRFQGVDKDVIRLSLFPYSLRDGAKSWLNTLAPRTIDSWNSLAE 150

Query: 171 KFMKKFFPSHKNARRRKELMGFQQKDRENLHDAWSRFKRMVKASPHNGIPECILMEVFYF 230
           KF+ K+FP  +NAR R E++ FQQ + E L +AW RFK M++  PH+G+P CI ME FY 
Sbjct: 151 KFLIKYFPPTRNARFRNEIVAFQQFEDETLSEAWERFKEMLRKCPHHGLPHCIQMETFYN 210

Query: 231 GLNKATQQTADAVFVGSMLKSSYNQ 256
           GLN AT+Q  DA   G+ML  +YN+
Sbjct: 211 GLNIATKQVVDASANGAMLSKTYNE 234

BLAST of PI0029049 vs. ExPASy TrEMBL
Match: A0A5A7V1F3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002850 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.7e-47
Identity = 104/216 (48.15%), Postives = 134/216 (62.04%), Query Frame = 0

Query: 43  PPHAALEPNAAYMAHDLDRPIRTYAAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQNV 102
           P + A+     Y+AH+L RPIR+YA P+LY FNPGIAYP FGENA +E K          
Sbjct: 6   PVNQAIHVATTYLAHNLHRPIRSYALPSLYEFNPGIAYPEFGENAHYESK---------- 65

Query: 103 GQFDGHPGEDPHEHIRNFYSICASFHMPGISPEELRFALFLLTLRDEAKRWANALEDGEV 162
                                                        D+AKRWAN++E GEV
Sbjct: 66  ---------------------------------------------DDAKRWANSMEHGEV 125

Query: 163 GTWDQLIEKFMKKFFPSHKNARRRKELMGFQQKDRENLHDAWSRFKRMVKASPHNGIPEC 222
            TW+ LIEKFMKKFFP+ K A+RR++L+ F+Q+DR+NLHDAWS FKRMVKA  H+GI + 
Sbjct: 126 TTWEDLIEKFMKKFFPTIKIAKRRQDLILFKQRDRKNLHDAWSIFKRMVKACLHHGITKY 166

Query: 223 ILMEVFYFGLNKATQQTADAVFVGSMLKSSYNQIKA 259
           +LME FYFGL+K T+Q+AD++F+G +L+SSYNQIKA
Sbjct: 186 VLMEGFYFGLSKDTRQSADSLFIGGILRSSYNQIKA 166

BLAST of PI0029049 vs. ExPASy TrEMBL
Match: A0A6J1EEI2 (uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC111433394 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 2.9e-47
Identity = 93/205 (45.37%), Postives = 131/205 (63.90%), Query Frame = 0

Query: 51  NAAYMAHDLDRPIRTYAAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQNVGQFDGHPG 110
           NA ++A D +R IR YA P +   NP I  P   +   FE+KPVM QM+Q +GQF G P 
Sbjct: 40  NAIHLADDRERAIRAYAHPAVEELNPCIIRPEM-QATTFELKPVMFQMLQTIGQFHGLPS 99

Query: 111 EDPHEHIRNFYSICASFHMPGISPEELRFALFLLTLRDEAKRWANALEDGEVGTWDQLIE 170
           EDPH H+++F  +  SF    +  + +R +LF  +LRD AK W N L  G + +W+ L+E
Sbjct: 100 EDPHLHLKSFLGVSDSFRFQRVDKDVIRLSLFPYSLRDGAKSWLNTLALGTIDSWNSLVE 159

Query: 171 KFMKKFFPSHKNARRRKELMGFQQKDRENLHDAWSRFKRMVKASPHNGIPECILMEVFYF 230
           KF+ K+FP  +NAR R E++ FQQ + + L +AW RFK M++  PH+G+P CI ME FY 
Sbjct: 160 KFLIKYFPPTRNARFRNEIVVFQQFEDDTLSEAWERFKEMLRKCPHHGLPHCIQMETFYN 219

Query: 231 GLNKATQQTADAVFVGSMLKSSYNQ 256
           GLN AT+Q  DA   G++L  +YN+
Sbjct: 220 GLNIATKQVVDASANGAILSKTYNE 243

BLAST of PI0029049 vs. ExPASy TrEMBL
Match: A0A6J1EQ90 (uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC111436411 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-44
Identity = 105/266 (39.47%), Postives = 150/266 (56.39%), Query Frame = 0

Query: 8   QFELDPEIERTFRRNRQRARQRQARRME------NNNRNAPPP-----HAALEPNAAYMA 67
           +F LDPEIERTFRR  ++ ++   + ++        NR    P        +  N  ++A
Sbjct: 8   EFILDPEIERTFRRRLKKKKKMTEQNIQQIELGAQLNREFENPAMMANQERITANPIHLA 67

Query: 68  HDLDRPIRTYAAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQNVGQFDGHPGEDPHEH 127
            D +R IR YA P +   NP I  P   +   FE+KPVM QM+Q +GQF G P EDPH H
Sbjct: 68  DDRERAIRAYAHPAVEELNPCIIRPEI-QGTTFELKPVMFQMLQTIGQFHGLPLEDPHLH 127

Query: 128 IRNFYSI-------CASFHMPGISPEELRFALFLLTLRDEAKRWANALEDGEVGTWDQLI 187
           +++F  +         SF   G+  + +R +LF   LRD AK W N L  G + +W+ L 
Sbjct: 128 LKSFLGVSDSFRFHSDSFRFQGVDKDMIRLSLFPYLLRDGAKSWLNTLAPGTIDSWNSLA 187

Query: 188 EKFMKKFFPSHKNARRRKELMGFQQKDRENLHDAWSRFKRMVKASPHNGIPECILMEVFY 247
           E F+ K+FP  +NAR + E++ FQQ + E L +A  RFK M++  PH+G+P CI ME FY
Sbjct: 188 ENFLIKYFPPTRNARFKNEIVTFQQFEDETLSEACERFKEMLRKCPHHGLPHCIQMETFY 247

Query: 248 FGLNKATQQTADAVFVGSMLKSSYNQ 256
            GLN  T+Q  DA   G++L  +YN+
Sbjct: 248 NGLNIVTKQVVDASANGAILSKTYNE 272

BLAST of PI0029049 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 275.0 bits (702), Expect = 6.5e-70
Identity = 129/274 (47.08%), Postives = 182/274 (66.42%), Query Frame = 0

Query: 1   MSDGEQPQFELDPEIERTFRRNRQRARQRQARRMENNNRNA-----------------PP 60
           MS+G+ P F++DPEIERTFRR  ++ +QR++ +    N +A                   
Sbjct: 2   MSEGDNPTFDIDPEIERTFRRRIRQIKQRRSNQTIEENMDAQYNQPQAPQAGVRQNANAQ 61

Query: 61  PHAALEPNAAYMAHDLDRPIRTYAAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQNVG 120
            HA  + N   +AHD +RP+R YA+PNLYNF PGI  P F  N RFE+KPVMLQM+Q  G
Sbjct: 62  EHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQMLQAAG 121

Query: 121 QFDGHPGEDPHEHIRNFYSICASFHMPGISPEELRFALFLLTLRDEAKRWANALEDGEVG 180
           QF G  GEDPH H+++F  IC++F M G+  + +R  LF  +LRDEA++WA + E GE+ 
Sbjct: 122 QFGGATGEDPHAHLKSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEARQWAYSFEPGEIT 181

Query: 181 TWDQLIEKFMKKFFPSHKNARRRKELMGFQQKDRENLHDAWSRFKRMVKASPHNGIPECI 240
           TW +++EKFM+K+FP   +A+RR++++ F+QKD E   +AW+RFKR+V+  PHNGIP C+
Sbjct: 182 TWGKMVEKFMQKYFPPTVSAKRRRDIVTFEQKDSETFSEAWTRFKRLVRNCPHNGIPNCV 241

Query: 241 LMEVFYFGLNKATQQTADAVFVGSMLKSSYNQIK 258
            ME+FY GLNK +Q  ADA   G ++  +Y Q K
Sbjct: 242 QMEIFYGGLNKTSQSMADASAAGGLMDKTYTQAK 275

BLAST of PI0029049 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 250.0 bits (637), Expect = 2.3e-62
Identity = 128/262 (48.85%), Postives = 177/262 (67.56%), Query Frame = 0

Query: 1   MSDGEQPQFELDPEIERTF--RRNRQRARQRQARRMENNNRNAPPPHAALE---PNAAYM 60
           MS    P+FE +PEI+ TF  R ++ RA +R+    +NNN  AP  +  +     +  ++
Sbjct: 1   MSTRTDPEFEANPEIDHTFRTRAHQNRAWRRRINMADNNNNEAPEGNQGVNRPVQDPVFL 60

Query: 61  AHDLDRPIRTYAAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQNVGQFDGHPGEDPHE 120
           A D + PIR YAAPNLY+F+PGI+ P+  ENARFEIKPVM+QMIQN+ QF+    E+PH 
Sbjct: 61  AADHNIPIRNYAAPNLYDFSPGISRPIVEENARFEIKPVMVQMIQNMRQFESLQCENPHA 120

Query: 121 HIRNFYSICASFHMPGISPEELRFALFLLTLRDEAKRWANALEDGEVGTWDQLIEKFMKK 180
           H+  F  +C++F +PGI+P  +R  LF  TLRD+AKRWA++LE  E+ + DQL+E FMKK
Sbjct: 121 HLTIFVEMCSTFSIPGITPVGIRLYLFPYTLRDKAKRWAHSLEANEITSSDQLVEWFMKK 180

Query: 181 FFPSHKNARRRKELMGFQQKDRENLHDAWSRFKRMVKASPHNGIPECILMEVFYFGLNKA 240
           FFP   N RRRK ++ F++ D E L  AW RF+R+VK  PH GI +C+LME+FY GLN++
Sbjct: 181 FFPPAINTRRRKNVLNFEKMDNETLSTAWVRFRRLVKNCPHIGILDCVLMEMFYNGLNRS 240

Query: 241 TQQTADAVFVGSMLKSSYNQIK 258
           TQ  ADA  V   +  +Y + K
Sbjct: 241 TQAVADASAVERFMDKTYTKAK 262

BLAST of PI0029049 vs. NCBI nr
Match: XP_017233063.1 (PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus])

HSP 1 Score: 221.9 bits (564), Expect = 6.6e-54
Identity = 119/259 (45.95%), Postives = 156/259 (60.23%), Query Frame = 0

Query: 1   MSDGEQPQFELDPEIERTFRRNRQRARQRQARR----MENNNRNAPPPHAALEPNAAYMA 60
           MS      F  DPEIERTF  NR+R  QR+ ++    M++N  N   P   + P  A++ 
Sbjct: 1   MSKRHPVVFAFDPEIERTF--NRRRKAQRKIKQTQVAMDDNVNNGDIP---IVPRGAFIV 60

Query: 61  HDLDRPIRTYAAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQNVGQFDGHPGEDPHEH 120
            D DR IR YAAP     N GI  P   +  +FE+KPVM QM+Q +GQF G P EDPH H
Sbjct: 61  DDKDRAIRQYAAPRFEELNSGIIRPNI-QATQFELKPVMFQMLQTIGQFSGMPTEDPHLH 120

Query: 121 IRNFYSICASFHMPGISPEELRFALFLLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKF 180
           +R F  I  SF   G+  + LR  LF  ++RD A+ W N+L  G V TW+ L EKF+ K+
Sbjct: 121 LRLFMEISDSFKFQGVPEDALRLKLFPYSVRDRARTWLNSLPAGSVTTWNDLTEKFLSKY 180

Query: 181 FPSHKNARRRKELMGFQQKDRENLHDAWSRFKRMVKASPHNGIPECILMEVFYFGLNKAT 240
           FP + NA+ R E+  FQQ+D E+L+DAW RFK +++  PH+GI  CI ME FY GLN  T
Sbjct: 181 FPPNMNAKLRNEINSFQQQDDESLYDAWERFKELLRKCPHHGILHCIQMETFYNGLNAQT 240

Query: 241 QQTADAVFVGSMLKSSYNQ 256
           +   DA   G++L  SYNQ
Sbjct: 241 KMVVDASANGALLSKSYNQ 253

BLAST of PI0029049 vs. NCBI nr
Match: XP_030508936.1 (uncharacterized protein LOC115723589 [Cannabis sativa])

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-52
Identity = 113/245 (46.12%), Postives = 147/245 (60.00%), Query Frame = 0

Query: 11  LDPEIERTFRRNRQRARQRQARRMENNNRNAPPPHAALEPNAAYMAHDLDRPIRTYAAPN 70
           +DPEIERTF   RQR ++++A++  N            E N   +A D  R IR YAAP 
Sbjct: 13  IDPEIERTF---RQRRKEQKAKKRCNMADGFEVGGVHNEANPIALADDRARAIREYAAPM 72

Query: 71  LYNFNPGIAYPVFGENARFEIKPVMLQMIQNVGQFDGHPGEDPHEHIRNFYSICASFHMP 130
               NPGI  P   +   FE+KPVM QM+Q VGQF G P EDPH HIR+F  +  SF + 
Sbjct: 73  FNELNPGIVRPEI-QAPHFELKPVMFQMLQTVGQFGGSPTEDPHLHIRSFLEVSDSFKLQ 132

Query: 131 GISPEELRFALFLLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKFFPSHKNARRRKELM 190
           G+S E LR  LF  +LRD A+ W N L    V  W+ L EKF++K+FP  +NA+ R E+M
Sbjct: 133 GVSEEALRLKLFPFSLRDRARAWLNTLPPDSVTNWNDLAEKFLRKYFPPTRNAKFRSEIM 192

Query: 191 GFQQKDRENLHDAWSRFKRMVKASPHNGIPECILMEVFYFGLNKATQQTADAVFVGSMLK 250
            FQQ + E   DAW RFK +++  PH+GIP CI +E FY GLN A +   DA   G++L 
Sbjct: 193 SFQQLEDETTSDAWERFKELLRKCPHHGIPHCIQLETFYNGLNAAARMVLDAFANGAILS 252

Query: 251 SSYNQ 256
            SYN+
Sbjct: 253 KSYNE 253

BLAST of PI0029049 vs. NCBI nr
Match: XP_017239618.1 (PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus])

HSP 1 Score: 211.8 bits (538), Expect = 6.8e-51
Identity = 117/259 (45.17%), Postives = 154/259 (59.46%), Query Frame = 0

Query: 1   MSDGEQPQFELDPEIERTFRRNRQRARQRQARR----MENNNRNAPPPHAALEPNAAYMA 60
           MS+     F  DPEIERTF  NR+R  QR+ ++    M +N  N   P   + P  A++ 
Sbjct: 1   MSERHPVVFGFDPEIERTF--NRRRKAQRKIKQTQVAMGDNINNGDIP---VVPAGAFIV 60

Query: 61  HDLDRPIRTYAAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQNVGQFDGHPGEDPHEH 120
            D DR IR YAAP     N GI  P   +  +FE+KPVM QM+Q +GQF G P EDPH H
Sbjct: 61  DDKDRAIRQYAAPCFEELNSGIIRPDI-QATQFELKPVMFQMLQTIGQFSGMPTEDPHLH 120

Query: 121 IRNFYSICASFHMPGISPEELRFALFLLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKF 180
           +R F  I  SF   G+  + LR  LF  ++RD A+ W N+L  G V TW+ L EKF+ K+
Sbjct: 121 LRLFMEISDSFKFQGVPEDALRLKLFPYSVRDRARTWLNSLPAGSVTTWNDLTEKFLSKY 180

Query: 181 FPSHKNARRRKELMGFQQKDRENLHDAWSRFKRMVKASPHNGIPECILMEVFYFGLNKAT 240
           FP + NA+   E+  FQQ+D E+L+DAW RFK +++  PH+GI   I ME FY GLN  T
Sbjct: 181 FPPNMNAKLWNEINSFQQQDDESLYDAWERFKELLRKCPHHGILHSIQMETFYNGLNAQT 240

Query: 241 QQTADAVFVGSMLKSSYNQ 256
           +   DA   G++L  SYNQ
Sbjct: 241 KMVVDASANGALLSKSYNQ 253

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
U5CUI21.1e-4948.29Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
A0A6J1H7E47.6e-4846.34uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
A0A5A7V1F31.7e-4748.15Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A6J1EEI22.9e-4745.37uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC1114333... [more]
A0A6J1EQ901.0e-4439.47uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC1114364... [more]
Match NameE-valueIdentityDescription
WP_217833177.16.5e-7047.08retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
XP_038887458.12.3e-6248.85uncharacterized protein LOC120077591 [Benincasa hispida][more]
XP_017233063.16.6e-5445.95PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus][more]
XP_030508936.12.8e-5246.12uncharacterized protein LOC115723589 [Cannabis sativa][more]
XP_017239618.16.8e-5145.17PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 141..233
e-value: 6.0E-16
score: 58.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availablePANTHERPTHR24559:SF334SUBFAMILY NOT NAMEDcoord: 115..255
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 115..255

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0029049.1PI0029049.1mRNA