PI0029013 (gene) Melon (PI 482460) v1

Overview


Name	PI0029013
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr02: 23125611 .. 23125815 (+)
RNA-Seq Expression	PI0029013
Synteny	PI0029013

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTAAAACGTGAACTCGATTGGATTTCCGTGAACCATAACCACAAACAAACGACAGAAGCAAACGGGATGAGGAATTGGTGGACTGTTACCAGTAACGTCGTCATGGGCGCCGCAACGTCGTCAGTCAAACGACGTCGTAAAACCAAACGGAAAACAACCACCTTCAATTCGGAAAGATGAAGAATCGGCGAGTGTATAA

mRNA sequence

ATGGAATTAAAACGTGAACTCGATTGGATTTCCGTGAACCATAACCACAAACAAACGACAGAAGCAAACGGGATGAGGAATTGGTGGACTTCAAACGACGTCGTAAAACCAAACGGAAAACAACCACCTTCAATTCGGAAAGATGAAGAATCGGCGAGTGTATAA

Coding sequence (CDS)

ATGGAATTAAAACGTGAACTCGATTGGATTTCCGTGAACCATAACCACAAACAAACGACAGAAGCAAACGGGATGAGGAATTGGTGGACTTCAAACGACGTCGTAAAACCAAACGGAAAACAACCACCTTCAATTCGGAAAGATGAAGAATCGGCGAGTGTATAA

Protein sequence

MELKRELDWISVNHNHKQTTEANGMRNWWTSNDVVKPNGKQPPSIRKDEESASV

Homology

[Close]

BLAST of PI0029013 vs. ExPASy TrEMBL
Match: A0A0A0LUQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015070 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.1e-15
Identity = 45/67 (67.16%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 1  MELKRELDWISVNHNHKQTTEANGMRNWWT-------------SNDVVKPNGKQPPSIRK 55
          MELKRE+DW+SV HNH QTTEANGM++WWT             SN V KPNGKQ PSIRK
Sbjct: 1  MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK 60

[Close]

BLAST of PI0029013 vs. NCBI nr
Match: KGN63761.1 (hypothetical protein Csa_013190 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 45/67 (67.16%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 1  MELKRELDWISVNHNHKQTTEANGMRNWWT-------------SNDVVKPNGKQPPSIRK 55
          MELKRE+DW+SV HNH QTTEANGM++WWT             SN V KPNGKQ PSIRK
Sbjct: 1  MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK 60

The following BLAST results are available for this feature:

BLAST of PI0029013 vs.


Match Name	E-value	Identity	Description

BLAST of PI0029013 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUQ9	5.1e-15	67.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015070 PE=4 SV=1	[more]

BLAST of PI0029013 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63761.1	1.1e-14	67.16	hypothetical protein Csa_013190 [Cucumis sativus]	[more]

BLAST of PI0029013 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0029013.1	PI0029013.1	mRNA