PI0029008 (gene) Melon (PI 482460) v1

Overview


Name	PI0029008
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	60S ribosomal protein L30
Location	chr02: 3509697 .. 3511087 (+)
RNA-Seq Expression	PI0029008
Synteny	PI0029008

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCCGCAAAGAAGACGGTCAGTTCTCCTTCTACTTCCAGCCAATCGCCATTCTTCGTTCTTCCATTTTCATATTGATCTTTGCTAGCTTTGGAGTATTCTGACATTTTTCTTTCTTGTTGTGAAACATTGAACAGAAGAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTGATGAAGAGTGGGAAATACACCTTGGGATACAAACCGTCCTCAAGACCTTGAGGAACTCTAAAGGTAATCTATTGATTAGGCCTTCTTCTTTTTGTTACTGATCTGATCTCTAGATTTTGCATCGATGGATGTTCGGTTAACTTTTTATTTTTGAGTTGATTAATTAGTTGTATTTTAGTTAGGGTTTTAGCTGAAATTACTGATAGTTTCGAGTCACAATCATTCTGAGAATGGAAGTGTTGTATGCTGTCGATCTGAGACTTTGTTTCCTACAGCATTAAATTATTTATTTATTCTGGTCTTCATCCATCAATAAAATAATCCATTTAGGTACTTAATTTATGTTATTGTATTAATTGAAATTACTCTGTTCCTGGGGATCTGTAGTTTCTGATTTGTTGTTCATGATTTGGTCTGCCCTTCGTTTCTGCTTTTGTGGGTATATCTAATTTTTTGTTTGGTTTTCAGGTAAGCTGATTATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATCGAATACTATGCAATGTTGGCCAAGGTTGGAGTTCACCATTACAATGGAAGTATGTTTCTCTAACCCTTTTAACAAAGCATTGTCCTTTTTTTTTTTCTTTGGCACTACATTGTAATTTAATTGCCCTTTAGAATTGGAACATGTATTTATCTACCATCATTTTGTCAACTGAGTGAAAATTTCTCATTGTTTTGCCTTCTTGGTTGCTGGACTTGTTGGATGTCTCAATGGTTTTTTCCTATGTAACTGATGCATTTCCTTTGTGTCATGCTTATGTTCATAGCTTGACGATTTGGTCCTCTTTTGAACAATAAATGGAGAGTAGAAATCTATGGAGTAAGAACATATTAATTGTTTAGGATTAGGAGAAGGCTGTAAACAAAAGAATCTACGGTAGTGCCTCTTGTTGACCTGGATTAGAAGTTGATTATGGTGGAATAGATTTGGTTAAATTTTACTCATTTGTGAACAAATATCTTCTTTTTATGTTCTCAGGTAATGTCGACCTTGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCCGGTAAATTTCTCGATTAATCCCATCTTCTACTTTTGAATTACTGCCTGAACATAATGTTCTAATTATGGTTTTCTAATGTCTTTCAGGTGATTCGGATATTATCAAGAGCATGCCCGAAAGTTAG

mRNA sequence

ATGGTGGCCGCAAAGAAGACGACTCGCTCTCGTGATGAAGAGTGGGAAATACACCTTGGGATACAAACCGTCCTCAAGACCTTGAGGAACTCTAAAGGTAAGCTGATTATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATCGAATACTATGCAATGTTGGCCAAGGTTGGAGTTCACCATTACAATGGAAGTAATGTCGACCTTGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCCGGTGATTCGGATATTATCAAGAGCATGCCCGAAAGTTAG

Coding sequence (CDS)

ATGGTGGCCGCAAAGAAGACGACTCGCTCTCGTGATGAAGAGTGGGAAATACACCTTGGGATACAAACCGTCCTCAAGACCTTGAGGAACTCTAAAGGTAAGCTGATTATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATCGAATACTATGCAATGTTGGCCAAGGTTGGAGTTCACCATTACAATGGAAGTAATGTCGACCTTGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCCGGTGATTCGGATATTATCAAGAGCATGCCCGAAAGTTAG

Protein sequence

MVAAKKTTRSRDEEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES

Homology

[Close]

BLAST of PI0029008 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-40
Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT ++ +          +  +  LG +TVLK+LR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 100
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPGDSDIIK++P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLP 109

[Close]

BLAST of PI0029008 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.6e-38
Identity = 78/109 (71.56%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT ++ +          +  +  LG +TVL++LR++KGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 100
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID GDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIP 109

[Close]

BLAST of PI0029008 vs. ExPASy Swiss-Prot
Match: O48558 (60S ribosomal protein L30 OS=Zea mays OX=4577 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.0e-37
Identity = 77/109 (70.64%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVA KKT +S D          +  +  LG +TVL+TLRNSK KL+IIANNCPPLRKSEI
Sbjct: 1   MVATKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 100
           EYYAMLAKV VHH++G+NVDLGTACGKY+RVCCLSIIDPGDSDIIK+ P
Sbjct: 61  EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTP 109

[Close]

BLAST of PI0029008 vs. ExPASy Swiss-Prot
Match: Q9SDG6 (60S ribosomal protein L30 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-37
Identity = 77/110 (70.00%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT +S D          +  +  LG +TVL+TLRNSK KL+II+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPE 101
           EYYAMLAKV VHH++G+NVDLGTACGKY+RVCCLSIIDPGDSDIIK+  E
Sbjct: 61  EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTGE 110

[Close]

BLAST of PI0029008 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.9e-36
Identity = 74/109 (67.89%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT +S +          +  +  LG ++VLK+LR+SKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 100
           EYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPGDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109

[Close]

BLAST of PI0029008 vs. ExPASy TrEMBL
Match: A0A5D3CI16 (60S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00350 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.0e-41
Identity = 88/111 (79.28%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 102
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 111

[Close]

BLAST of PI0029008 vs. ExPASy TrEMBL
Match: A0A1S3BQS6 (60S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103492467 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.0e-41
Identity = 88/111 (79.28%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 102
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 111

[Close]

BLAST of PI0029008 vs. ExPASy TrEMBL
Match: A0A0A0LXA9 (Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600980 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.3e-40
Identity = 87/111 (78.38%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT ++ +          +  +  LG +TVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 102
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 111

[Close]

BLAST of PI0029008 vs. ExPASy TrEMBL
Match: A0A6J1JJ11 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 85/109 (77.98%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 100
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLP 109

[Close]

BLAST of PI0029008 vs. ExPASy TrEMBL
Match: A0A3Q7J0N1 (Ribosomal_L7Ae domain-containing protein OS=Solanum lycopersicum OX=4081 GN=101254162 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 85/109 (77.98%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 100
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 109

[Close]

BLAST of PI0029008 vs. NCBI nr
Match: XP_008451087.1 (PREDICTED: 60S ribosomal protein L30 [Cucumis melo] >KAA0055665.1 60S ribosomal protein L30 [Cucumis melo var. makuwa] >TYK09919.1 60S ribosomal protein L30 [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 88/111 (79.28%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 102
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 111

[Close]

BLAST of PI0029008 vs. NCBI nr
Match: XP_011660089.1 (60S ribosomal protein L30 [Cucumis sativus] >KGN66408.1 hypothetical protein Csa_007164 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 4.7e-40
Identity = 87/111 (78.38%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT ++ +          +  +  LG +TVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 102
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 111

[Close]

BLAST of PI0029008 vs. NCBI nr
Match: XP_038878626.1 (60S ribosomal protein L30 [Benincasa hispida])

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-39
Identity = 86/109 (78.90%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 100
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 109

[Close]

BLAST of PI0029008 vs. NCBI nr
Match: XP_004251199.1 (60S ribosomal protein L30 [Solanum lycopersicum] >XP_015056853.1 60S ribosomal protein L30 [Solanum pennellii] >XP_016548732.1 PREDICTED: 60S ribosomal protein L30 [Capsicum annuum])

HSP 1 Score: 171.8 bits (434), Expect = 3.0e-39
Identity = 85/109 (77.98%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 100
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 109

[Close]

BLAST of PI0029008 vs. NCBI nr
Match: XP_022960585.1 (60S ribosomal protein L30-like [Cucurbita moschata] >XP_022988235.1 60S ribosomal protein L30-like [Cucurbita maxima] >XP_023515547.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >KAG7022349.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.8 bits (434), Expect = 3.0e-39
Identity = 85/109 (77.98%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 100
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLP 109

[Close]

BLAST of PI0029008 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-37
Identity = 74/109 (67.89%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKT +S +          +  +  LG ++VLK+LR+SKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 100
           EYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPGDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109

[Close]

BLAST of PI0029008 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-37
Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MV  KKT +S +          +  +  LG ++VLK+LR SKGKLI+I+ NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 100
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109

[Close]

BLAST of PI0029008 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 147.9 bits (372), Expect = 4.4e-36
Identity = 71/109 (65.14%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVA KK  +S +          +  +  LG ++VLK+LR+SKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 100
           EYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPGDSDIIK++P
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109

The following BLAST results are available for this feature:

BLAST of PI0029008 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49884	2.9e-40	73.39	60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1	[more]
Q9M5M6	1.6e-38	71.56	60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1	[more]
O48558	1.0e-37	70.64	60S ribosomal protein L30 OS=Zea mays OX=4577 GN=RPL30 PE=3 SV=1	[more]
Q9SDG6	2.3e-37	70.00	60S ribosomal protein L30 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL30 PE=3...	[more]
Q9C8F7	1.9e-36	67.89	Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P...	[more]

BLAST of PI0029008 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CI16	6.0e-41	79.28	60S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BQS6	6.0e-41	79.28	60S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103492467 PE=3 SV=1	[more]
A0A0A0LXA9	2.3e-40	78.38	Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600...	[more]
A0A6J1JJ11	1.5e-39	77.98	60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 ...	[more]
A0A3Q7J0N1	1.5e-39	77.98	Ribosomal_L7Ae domain-containing protein OS=Solanum lycopersicum OX=4081 GN=1012...	[more]

BLAST of PI0029008 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451087.1	1.2e-40	79.28	PREDICTED: 60S ribosomal protein L30 [Cucumis melo] >KAA0055665.1 60S ribosomal ...	[more]
XP_011660089.1	4.7e-40	78.38	60S ribosomal protein L30 [Cucumis sativus] >KGN66408.1 hypothetical protein Csa...	[more]
XP_038878626.1	1.4e-39	78.90	60S ribosomal protein L30 [Benincasa hispida]	[more]
XP_004251199.1	3.0e-39	77.98	60S ribosomal protein L30 [Solanum lycopersicum] >XP_015056853.1 60S ribosomal p...	[more]
XP_022960585.1	3.0e-39	77.98	60S ribosomal protein L30-like [Cucurbita moschata] >XP_022988235.1 60S ribosoma...	[more]

BLAST of PI0029008 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36240.1	1.4e-37	67.89	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G77940.1	4.0e-37	66.97	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G18740.1	4.4e-36	65.14	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 5..95 e-value: 1.5E-20 score: 72.7
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 5..98 e-value: 1.5E-39 score: 135.9
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 17..96
None	No IPR available	PANTHER	PTHR11449:SF23	60S RIBOSOMAL PROTEIN L30	coord: 18..100
IPR039109	Ribosomal protein L30/YlxQ	PANTHER	PTHR11449	RIBOSOMAL PROTEIN L30	coord: 18..100
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00993	RIBOSOMAL_L30E_2	coord: 70..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0029008.1	PI0029008.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome