PI0028988 (gene) Melon (PI 482460) v1

Overview


Name	PI0028988
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pre T-cell antigen receptor alpha
Location	chr02: 22162957 .. 22164202 (+)
RNA-Seq Expression	PI0028988
Synteny	PI0028988

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGATTTTATATATATATTTGGTAGTACTTAGTTATTTTAGTTGATTGTATAAGATTAATGCATGGGAATTGATAAATTTTCAGCTCACTTGTTTTTTCATAGCTTCAATTTTTATTTTTAAAATCAATTTTCATATATTACCCAATATAAATTTATATTTTTTTTGTGAACATTTAAAAGAAAACAAATAAGAAAACCTAACTCTTACCATGCATTAATAAAATCTAACTCTTACCAAACACATAATTAATAGGCAAATGGTTATTAACTGGAAAAATAGAGAATTTAACAGCTTCAAAATTATTCATGAAGTGCTTTGATATTTCTTTTATTAATTTAAACATTTTATAAATATTTTAATTCATTTTAATATATTTAAAAACAACCAAATATATATATATATGTTTTGATTCGTCCACTCGGTCGAGCTATAAGGTAAACTTCAGAGGTAGAGAGCGACAATGGGCGGAGGAATGGAAGCTCACAAGAGCGTATTTATTGAAGATTGGCGTATTCCTAGAGAAAATCTTAAGCATAACTTCCGCTGGACTCGGCGGAATTTCGGTATTGTCGGTTTCTTCGGTATCGCCATTCCCCTTCTTGTACACAAGGGCACCGTCAGGGAATTTGTAATATCATTTCTCTCCATCTTTTTCTTTCTTTACTATGTCGTTTGATTTACTTTCCATCTTTTTGGGGCTGAAATTGTTCTTTTTAGGGTTTCCGTTTTTTATTTATTTATTATGTTTTCGGCTCTGAATTCCTTTATACTTGATTGTTTAGAATTGAAGTTTTTGGTCCTAATTTCCTGGATTGGCCCTAATGATTTTGCAATTGTTTAATTTCTTTTCCTGTAATTTGTTTATTCATATTTTTACTGTTTGTTACAGTTTAAATACCGGGTTTGTTAATATTGGTTGGCACTAACTTGGAGCATTTCATCGGCAATGCTTTCTTTTAAAAGGATAGATTTGATTTGCTTTTCAGTTTACTGCTTAGATACTTGTTTCATTGAATTGCCGCATCTACTTGCTGGAAGTTATGTATTTTAAATCATCTAAATCATCTATGTTGAGGATCCCACTTTGAAAAACAATCAAGGGACTTCGAAATGTTTATAGATACATAGGCTACTCTTTTCAATTGGTATCGAGATGTAACCCATGTTATCTAACATTCTATCTTTGTAAGACTTCCAGTACCTAAAGAAAGCGTGCAAAGGAAGGGGGAAACACAAAGGCTAA

mRNA sequence

AAAGATTTTATATATATATTTGGTAGTACTTAGTTATTTTAGTTGATTGTATAAGATTAATGCATGGGAATTGATAAATTTTCAGCTCACTTGTTTTTTCATAGCTTCAATTTTTATTTTTAAAATCAATTTTCATATATTACCCAATATAAATTTATATTTTTTTTGTGAACATTTAAAAGAAAACAAATAAGAAAACCTAACTCTTACCATGCATTAATAAAATCTAACTCTTACCAAACACATAATTAATAGGCAAATGGTTATTAACTGGAAAAATAGAGAATTTAACAGCTTCAAAATTATTCATGAAGTGCTTTGATATTTCTTTTATTAATTTAAACATTTTATAAATATTTTAATTCATTTTAATATATTTAAAAACAACCAAATATATATATATATGTTTTGATTCGTCCACTCGGTCGAGCTATAAGGTAAACTTCAGAGGTAGAGAGCGACAATGGGCGGAGGAATGGAAGCTCACAAGAGCGTATTTATTGAAGATTGGCGTATTCCTAGAGAAAATCTTAAGCATAACTTCCGCTGGACTCGGCGGAATTTCGGTATTGTCGGTTTCTTCGGTATCGCCATTCCCCTTCTTGTACACAAGGGCACCGTCAGGGAATTTTACCTAAAGAAAGCGTGCAAAGGAAGGGGGAAACACAAAGGCTAA

Coding sequence (CDS)

ATGGGCGGAGGAATGGAAGCTCACAAGAGCGTATTTATTGAAGATTGGCGTATTCCTAGAGAAAATCTTAAGCATAACTTCCGCTGGACTCGGCGGAATTTCGGTATTGTCGGTTTCTTCGGTATCGCCATTCCCCTTCTTGTACACAAGGGCACCGTCAGGGAATTTTACCTAAAGAAAGCGTGCAAAGGAAGGGGGAAACACAAAGGCTAA

Protein sequence

MGGGMEAHKSVFIEDWRIPRENLKHNFRWTRRNFGIVGFFGIAIPLLVHKGTVREFYLKKACKGRGKHKG

Homology

[Close]

BLAST of PI0028988 vs. ExPASy TrEMBL
Match: A0A6J1E6W7 (uncharacterized protein LOC111429971 OS=Cucurbita moschata OX=3662 GN=LOC111429971 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.3e-20
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MGGGMEAHKSVFIEDWRIPRENLKHNFRWTRRNFGIVGFFGIAIPLLVHKGTVREFYLKK 60
          MGGGMEAHK+ FIEDW   RENL+HNFRWTRRNF +VG FGIA+PLLV+KG VREF+++ 
Sbjct: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60

Query: 61 ACKGRGKHK 70
             GR   K
Sbjct: 61 EDAGRPYRK 69

[Close]

BLAST of PI0028988 vs. ExPASy TrEMBL
Match: A0A6J1JDA5 (uncharacterized protein LOC111485748 OS=Cucurbita maxima OX=3661 GN=LOC111485748 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-20
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MGGGMEAHKSVFIEDWRIPRENLKHNFRWTRRNFGIVGFFGIAIPLLVHKGTVREFYLKK 60
          MGGGMEAHK+ FIEDW   RENL+HNFRWTRRNF +VG FGIA+PLLV+KG VREF+++ 
Sbjct: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60

Query: 61 ACKGRGKHK 70
             GR   K
Sbjct: 61 EDAGRPYRK 69

[Close]

BLAST of PI0028988 vs. ExPASy TrEMBL
Match: A0A059CK03 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02622 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-19
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MGGGMEAHKSVFIEDWRIPRENLKHNFRWTRRNFGIVGFFGIAIPLLVHKGTVREFYLKK 60
          MGGGMEAHK+ FIEDW   RE L+HNFRWTRRNF +VG FG+AIPLLV+KG VREF+++ 
Sbjct: 1  MGGGMEAHKNKFIEDWGSARETLEHNFRWTRRNFALVGIFGVAIPLLVYKGIVREFHMQD 60

Query: 61 ACKGRGKHK 70
             GR   K
Sbjct: 61 EDNGRPYRK 69

[Close]

BLAST of PI0028988 vs. ExPASy TrEMBL
Match: A0A6J1C330 (uncharacterized protein LOC111007489 OS=Momordica charantia OX=3673 GN=LOC111007489 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-19
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MGGGMEAHKSVFIEDWRIPRENLKHNFRWTRRNFGIVGFFGIAIPLLVHKGTVREFYLKK 60
          MGGGMEA K+ FIEDW   RENL+HNFRWTRRNF +VG FGIAIPLLV+KG VREF+++ 
Sbjct: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQD 60

Query: 61 ACKGRGKHK 70
             GR   K
Sbjct: 61 EDAGRPYRK 69

[Close]

BLAST of PI0028988 vs. ExPASy TrEMBL
Match: A0A218XWT9 (uncharacterized protein LOC116198173 OS=Punica granatum OX=22663 GN=LOC116198173 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-19
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MGGGMEAHKSVFIEDWRIPRENLKHNFRWTRRNFGIVGFFGIAIPLLVHKGTVREFYLKK 60
          MGGGMEAHK+ FIEDW   RENL+HNFRWTRRN  +VG FGIAIP+LV+KG VREF+++ 
Sbjct: 1  MGGGMEAHKNRFIEDWSTARENLEHNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 ACKGRGKHK 70
             GR   K
Sbjct: 61 EDAGRPYRK 69

[Close]

BLAST of PI0028988 vs. NCBI nr
Match: XP_022921830.1 (uncharacterized protein LOC111429971 [Cucurbita moschata] >KAG6589656.1 hypothetical protein SDJN03_15079, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MGGGMEAHKSVFIEDWRIPRENLKHNFRWTRRNFGIVGFFGIAIPLLVHKGTVREFYLKK 60
          MGGGMEAHK+ FIEDW   RENL+HNFRWTRRNF +VG FGIA+PLLV+KG VREF+++ 
Sbjct: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60

Query: 61 ACKGRGKHK 70
             GR   K
Sbjct: 61 EDAGRPYRK 69

[Close]

BLAST of PI0028988 vs. NCBI nr
Match: XP_022988537.1 (uncharacterized protein LOC111485748 [Cucurbita maxima] >XP_023516450.1 uncharacterized protein LOC111780310 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MGGGMEAHKSVFIEDWRIPRENLKHNFRWTRRNFGIVGFFGIAIPLLVHKGTVREFYLKK 60
          MGGGMEAHK+ FIEDW   RENL+HNFRWTRRNF +VG FGIA+PLLV+KG VREF+++ 
Sbjct: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60

Query: 61 ACKGRGKHK 70
             GR   K
Sbjct: 61 EDAGRPYRK 69

[Close]

BLAST of PI0028988 vs. NCBI nr
Match: XP_038878542.1 (uncharacterized protein LOC120070743 [Benincasa hispida])

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MGGGMEAHKSVFIEDWRIPRENLKHNFRWTRRNFGIVGFFGIAIPLLVHKGTVREFYLKK 60
          MGGGME HK+ FIEDW   RENL+HNFRWTRRNF IVG FGIA+PLLV+KG VREF+++ 
Sbjct: 1  MGGGMETHKNRFIEDWSTARENLEHNFRWTRRNFAIVGLFGIAVPLLVYKGIVREFHMQD 60

Query: 61 ACKGRGKHK 70
             GR   K
Sbjct: 61 EDAGRPYRK 69

[Close]

BLAST of PI0028988 vs. NCBI nr
Match: XP_039161924.1 (uncharacterized protein LOC120290205 [Eucalyptus grandis] >KCW78476.1 hypothetical protein EUGRSUZ_D02622 [Eucalyptus grandis])

HSP 1 Score: 104.0 bits (258), Expect = 5.4e-19
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MGGGMEAHKSVFIEDWRIPRENLKHNFRWTRRNFGIVGFFGIAIPLLVHKGTVREFYLKK 60
          MGGGMEAHK+ FIEDW   RE L+HNFRWTRRNF +VG FG+AIPLLV+KG VREF+++ 
Sbjct: 1  MGGGMEAHKNKFIEDWGSARETLEHNFRWTRRNFALVGIFGVAIPLLVYKGIVREFHMQD 60

Query: 61 ACKGRGKHK 70
             GR   K
Sbjct: 61 EDNGRPYRK 69

[Close]

BLAST of PI0028988 vs. NCBI nr
Match: XP_038990551.1 (uncharacterized protein LOC120113463 [Hibiscus syriacus])

HSP 1 Score: 103.6 bits (257), Expect = 7.1e-19
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MGGGMEAHKSVFIEDWRIPRENLKHNFRWTRRNFGIVGFFGIAIPLLVHKGTVREFYLKK 60
          MGGGMEAHK+ FIEDW   RENL+HNFRWTRRN+ +VG FGIAIP+LV+KG VREF+++ 
Sbjct: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNWALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 ACKGRGKHK 70
             GR   K
Sbjct: 61 EDNGRPYRK 69

[Close]

BLAST of PI0028988 vs. TAIR 10
Match: AT2G31490.1 (unknown protein; Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.4 bits (241), Expect = 4.7e-21
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MGGGMEAHKSVFIEDWRIPRENLKHNFRWTRRNFGIVGFFGIAIPLLVHKGTVREFYLKK 60
          MGGGME +K+ FIEDW   RENL+HNFRWTRRNF ++G FGIA+P++V+KG V++F+++ 
Sbjct: 1  MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDFHMQD 60

Query: 61 ACKGRGKHK 70
             GR   K
Sbjct: 61 EDAGRPHRK 69

The following BLAST results are available for this feature:

BLAST of PI0028988 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028988 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6W7	5.3e-20	68.12	uncharacterized protein LOC111429971 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A6J1JDA5	6.9e-20	68.12	uncharacterized protein LOC111485748 OS=Cucurbita maxima OX=3661 GN=LOC111485748...	[more]
A0A059CK03	2.6e-19	66.67	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02622 PE=4 SV...	[more]
A0A6J1C330	3.4e-19	68.12	uncharacterized protein LOC111007489 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A218XWT9	4.5e-19	66.67	uncharacterized protein LOC116198173 OS=Punica granatum OX=22663 GN=LOC116198173...	[more]

BLAST of PI0028988 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921830.1	1.1e-19	68.12	uncharacterized protein LOC111429971 [Cucurbita moschata] >KAG6589656.1 hypothet...	[more]
XP_022988537.1	1.4e-19	68.12	uncharacterized protein LOC111485748 [Cucurbita maxima] >XP_023516450.1 uncharac...	[more]
XP_038878542.1	1.9e-19	68.12	uncharacterized protein LOC120070743 [Benincasa hispida]	[more]
XP_039161924.1	5.4e-19	66.67	uncharacterized protein LOC120290205 [Eucalyptus grandis] >KCW78476.1 hypothetic...	[more]
XP_038990551.1	7.1e-19	66.67	uncharacterized protein LOC120113463 [Hibiscus syriacus]	[more]

BLAST of PI0028988 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31490.1	4.7e-21	57.97	unknown protein; Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35479:SF4	UNNAMED PRODUCT	coord: 1..68
None	No IPR available	PANTHER	PTHR35479	UNNAMED PRODUCT	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028988.1	PI0028988.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I