PI0028985 (gene) Melon (PI 482460) v1

Overview


Name	PI0028985
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr05: 9582472 .. 9582743 (-)
RNA-Seq Expression	PI0028985
Synteny	PI0028985

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGGCATGGCAAAATGGGCATGTCATGGGCAACATGTTTGCTAGGCGAGATGCTTGATTAGGCGAGATGATTGGCTAGGTGTGTTGGCTTGTAGGCGGGTTGAGCAAGGATGGGCATTGCGACTATGTTGTAAGGTTAGCATGCGAGCAAAAAAGGAAGTTTGGGTAAGGAACTAAGGCTTGGGCGAGATAATGAAGGTTGTGGACTTCAAGGCATGTCGATGTGGTGGTTTCTAGGTGTCCACTGCATGCACCATGCATTTTTGTGA

mRNA sequence

ATGATGGGCATGGCAAAATGGGCATGTCATGGGCAACATCATGCGAGCAAAAAAGGAAGTTTGGGTAAGGAACTAAGGCTTGGGCGAGATAATGAAGGTTGTGGACTTCAAGGCATGTCGATGTGGTGGTTTCTAGGTGTCCACTGCATGCACCATGCATTTTTGTGA

Coding sequence (CDS)

ATGATGGGCATGGCAAAATGGGCATGTCATGGGCAACATCATGCGAGCAAAAAAGGAAGTTTGGGTAAGGAACTAAGGCTTGGGCGAGATAATGAAGGTTGTGGACTTCAAGGCATGTCGATGTGGTGGTTTCTAGGTGTCCACTGCATGCACCATGCATTTTTGTGA

Protein sequence

MMGMAKWACHGQHHASKKGSLGKELRLGRDNEGCGLQGMSMWWFLGVHCMHHAFL

Homology

[Close]

BLAST of PI0028985 vs. NCBI nr
Match: KAE8648377.1 (hypothetical protein Csa_023324 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 6.0e-05
Identity = 31/56 (55.36%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 5  AKWACHGQ-----HHASKKGSLGKELRLGRDNEGCGLQGMSMWWFLGVHCMHHAFL 56
          A+WACHG+      HASK   LG E  +GR +EGC LQG SMWW   V   HHAFL
Sbjct: 5  ARWACHGRTLVLGKHASKV-KLGMESLVGRVDEGCELQGWSMWWNSSVLGSHHAFL 59

The following BLAST results are available for this feature:

BLAST of PI0028985 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028985 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028985 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648377.1	6.0e-05	55.36	hypothetical protein Csa_023324 [Cucumis sativus]	[more]

BLAST of PI0028985 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028985.1	PI0028985.1	mRNA