PI0028973 (gene) Melon (PI 482460) v1

Overview
NamePI0028973
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr05: 17021290 .. 17022305 (+)
RNA-Seq ExpressionPI0028973
SyntenyPI0028973
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATTCACTCCACTGGTTTTGGTGCTATCATTAGGGATTTTAGTGGCAGGATCGGTGGTGTTGTAGCCTGCTTGAAGATCATGGTTTACCCTCCCCCATTAGCGAAAATTCTTGCTATCAGGAATGGCATCAAATTTTCTACTCTCCACTCCTGCTCTAATTTGATTGTGGAATCAGACTGTCTGCAAGCCATTAACTTAGTCGCGAAAAACCTTGGTCAAGCCTTGTTGATTGTTGGATTGAAGAAATCAAAACCCTATCCGAAAATTTTGAGTCTCTTTCGTTTGTGCATTGTTCCAGAAATTGCAATGGTGTCGCTGATCGTATTGCCAAGAATGCCAACTTCGGTATTATCAATGTGGAATGGTCTCTAAATTTCCCTAGATGGATCGTTAATCAAATCGTGAATGACTTTTGTACAAACTATGCCCATGTGGCTTCGTGTTGAATAAAGTTTCTTCAAAAAAAAAATACCAAATTAGAGATATTCTTTTGATTTTAATTTTTCTAAATACCAACTTTAAACGTGTATGCGCAAAAAAGAAAAAAAAATTGTTTTCTTCCCTTCCTTTAGGATGCATTTTAGATTTTAGAGATAAAATCCGTGTTTTTTTAGAAAAAAAATTACTTTTAACATTTATACACAAAAATAGGGGGACATTTTAATTCTTTTTTAATGTAAGTTACATACAATATTAATGGGGAAAACATGAAATCAAAATAAATCATTAATTTAAAATAGATTTATTTGAGGAGGATTTATGGAGTAATCGAAAAATTAATGTAGTTTTGAAAAAAAAAATTAAGAAAAAAAGGGTTATTTTGAAACAAATCAGGTAAATAGACGCGCTCTTTATATATATATATATATAATTTTTTTTCCGTTTTTCAGGAAAGAATCTTTTTTTTTTTTTTTTTTTTTTTAATCCACTTTTCTATTATTTAATTTTTTTTATTTTACTTATTTTCAAACCCATTTTACTTTGAGGCACTTGCAAAAATAGCAAAATAA

mRNA sequence

ATGGGTATTCACTCCACTGGTTTTGGTGCTATCATTAGGGATTTTAGTGGCAGGATCGGTGGTGTTGTAGCCTGCTTGAAGATCATGGTTTACCCTCCCCCATTAGCGAAAATTCTTGCTATCAGGAATGGCATCAAATTTTCTACTCTCCACTCCTGCTCTAATTTGATTGTGGAATCAGACTGTCTGCAAGCCATTAACTTAGTCGCGAAAAACCTTGGTCAAGCCTTGTTGATTGTTGGATTGAAGAAATCAAAACCCTATCCGAAAATTTTGAGTCTCTTTCGTTTGTGCATTGTTCCAGAAATTGCAATGGTGTCGCTGATCGTATTGCCAAGAATGCCAACTTCGGCACTTGCAAAAATAGCAAAATAA

Coding sequence (CDS)

ATGGGTATTCACTCCACTGGTTTTGGTGCTATCATTAGGGATTTTAGTGGCAGGATCGGTGGTGTTGTAGCCTGCTTGAAGATCATGGTTTACCCTCCCCCATTAGCGAAAATTCTTGCTATCAGGAATGGCATCAAATTTTCTACTCTCCACTCCTGCTCTAATTTGATTGTGGAATCAGACTGTCTGCAAGCCATTAACTTAGTCGCGAAAAACCTTGGTCAAGCCTTGTTGATTGTTGGATTGAAGAAATCAAAACCCTATCCGAAAATTTTGAGTCTCTTTCGTTTGTGCATTGTTCCAGAAATTGCAATGGTGTCGCTGATCGTATTGCCAAGAATGCCAACTTCGGCACTTGCAAAAATAGCAAAATAA

Protein sequence

MGIHSTGFGAIIRDFSGRIGGVVACLKIMVYPPPLAKILAIRNGIKFSTLHSCSNLIVESDCLQAINLVAKNLGQALLIVGLKKSKPYPKILSLFRLCIVPEIAMVSLIVLPRMPTSALAKIAK
Homology
The following BLAST results are available for this feature:
BLAST of PI0028973 vs.
Match NameE-valueIdentityDescription
BLAST of PI0028973 vs.
Match NameE-valueIdentityDescription
BLAST of PI0028973 vs.
Match NameE-valueIdentityDescription
BLAST of PI0028973 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 123..124
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 5..71
e-value: 1.1E-5
score: 25.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028973.1PI0028973.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity