PI0028968 (gene) Melon (PI 482460) v1

Overview
NamePI0028968
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerase I subunit RPA1-like
Locationchr06: 15789708 .. 15791581 (+)
RNA-Seq ExpressionPI0028968
SyntenyPI0028968
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAACAAACACCAAACACCACTTAAACCAAGTCCATGTGTATCAGTGGTATCGAGCCGTCGGATTGGTGCAAGGTCTAGGCATTCCGAATATTTTGGTAAGTTACCAATACTTGATTAATTTTTTTAGAGAGGCTAAATTTTAGGAGAAATTTTCTCTTGTTTAATTGAATTGTCAATGATAAAAGTACCATCTATACATAAAGATTTGGGCTTTTTTCAAGAATACAACAAATCGAAAAAATATTTACACTGTATAGAACAATTTTAAAAACGAAAAAAACCCATAGGTCCACATGAAAAATACCAAAAATACCTCAATTAACACGCGATTAATCGGCCACACATGAACGAGTAATCTTCTAGTATACGCAATCGTGTAGACAATGATACAACTGATACACGATGTTGTACATTAGCATAAATGATGGAACGTTCAGATAATAAACCCTAAACGATGGTGAAAAGTTTTAGATATAAACGATCATGTAGAGTAACTTGAACAATTGTCGTATATGTAAGCACGATCGTTTATGTAAGTATAAACGATCATTTTGAGAAGCCCAATAGAAACCAAGCCCAATCACCCATAATTACAAAAATACCATCAAAATCAACACGCTATAAAAAGGAGAAACTTCTTTTTCAAACTTTTTCTCTTTCTTCACACTGCTTCGTCTTCTTCACATCATTTTTGTCATGCATCTTCTTCTTCAATTATTCATTTCCACCTACCTTTTTCAACAAAACTTCCGAAATTATTCTTCATTTTGTTCTTCACATTCTGTTTTCCATCAATCTTCCAAAATTTGTTTCCGACATTCTGTTTGTTGCTCAATATTTTGGTTCCACAACCAAATCTATCTCGATCTATCTCCCATACAAAGAGGTCTGAATCTATCTTCGTTTTATTTAATTTAATAATCACTCTTATTTTATGTAACTTAACCCTAGCGTTTTTTTTAAATAGATGGTGAGCAAGAAGCAAGCAACATCAACTAGCAAAACAATGAAATCTAAAGGAAAGACACAAGAAAAACAAATTAAGAAAGAAAAAGAAGTGAAGGTAATAAAATAGAATGTCAATGTTCGTCTATATAGTCCTCTATCTTTGTTTGTCTTTGTCTATATTTTTGTATCTATCTTTGTCTGTTTGCTCTATCTTTGTCAATATCAATTTGAATAATGTTGTGTATTTGTGTATTTGTTAGCACTAGCCCTTACTTTATAACATATTGTTTATTATATATTTTCCACAGGTGAACACCATCCAAATGATATAATTATGGAAGATGAATACAAGAATCTTAGAATTAATGTATACTATAGTTTAGAGACATTGAATCATATCAAATAACAAATAGACCAAACAATTCTTTCTAAGGTTTTGATGAACAACCCTTTTGGCCACTTCCTTGACATTAAAATGGCCAAAATACCAACACGATTCCAAATTTCTTAATAAGGAAGCAATGCCATACAAAAAAGGTCAATGTTCTTGCTTTCAACTTTAATGGACATATAACAGAATTTGGATTGAAAGAGTTCTGTTTAGTCACTAGATTAAAAGGGGCACAAATTCTCAAAATTAAATCTAGGAGAAAGAAAAGAGAATGGTTTGAAAAATGTCATTTTCCCTCGTGACCCGACTTTATAATGAGAAGAGATATAGAGAGAAATTTCAAAGCACTATACAATGAGGAAGACTCATTAAAAGAAAAATTAGTCAACCTCTATATCTTAGAACCACATCAATCTTCAACATCTAGACATATTGGATCATGAAGAAACCTTCAAAGACTATCCATGGGGAAGATTATCTTACATCCGAACATATCAGTTCTTCAAGAAAGCATCATACAACGATAAATGA

mRNA sequence

ATGCGAACAAACACCAAACACCACTTAAACCAAGTCCATGTGTATCAGTGGTATCGAGCCGTCGGATTGGTGCAAGGTCTAGGCATTCCGAATATTTTGATGGTGAGCAAGAAGCAAGCAACATCAACTAGCAAAACAATGAAATCTAAAGGAAAGACACAAGAAAAACAAATTAAGAAAGAAAAAGAAGTGAAGAACCACATCAATCTTCAACATCTAGACATATTGGATCATGAAGAAACCTTCAAAGACTATCCATGGGGAAGATTATCTTACATCCGAACATATCAGTTCTTCAAGAAAGCATCATACAACGATAAATGA

Coding sequence (CDS)

ATGCGAACAAACACCAAACACCACTTAAACCAAGTCCATGTGTATCAGTGGTATCGAGCCGTCGGATTGGTGCAAGGTCTAGGCATTCCGAATATTTTGATGGTGAGCAAGAAGCAAGCAACATCAACTAGCAAAACAATGAAATCTAAAGGAAAGACACAAGAAAAACAAATTAAGAAAGAAAAAGAAGTGAAGAACCACATCAATCTTCAACATCTAGACATATTGGATCATGAAGAAACCTTCAAAGACTATCCATGGGGAAGATTATCTTACATCCGAACATATCAGTTCTTCAAGAAAGCATCATACAACGATAAATGA

Protein sequence

MRTNTKHHLNQVHVYQWYRAVGLVQGLGIPNILMVSKKQATSTSKTMKSKGKTQEKQIKKEKEVKNHINLQHLDILDHEETFKDYPWGRLSYIRTYQFFKKASYNDK
Homology
[Close]
BLAST of PI0028968 vs. ExPASy TrEMBL
Match: A0A5A7T9I0 (DNA-directed RNA polymerase I subunit RPA1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001480 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 55  EKQIKKEKEVKNHINLQHLDILDHEETFKDYPWGRLSYIRTYQFFKKASYNDK 108
           +K    +K   NHINL HLDIL++EE FK YPWGRLSYI TYQF KKASYNDK
Sbjct: 225 KKASYNDKLQHNHINLLHLDILNNEEIFKGYPWGRLSYILTYQFLKKASYNDK 277

[Close]
BLAST of PI0028968 vs. NCBI nr
Match: KAA0038287.1 (DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 4.1e-10
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 55  EKQIKKEKEVKNHINLQHLDILDHEETFKDYPWGRLSYIRTYQFFKKASYNDK 108
           +K    +K   NHINL HLDIL++EE FK YPWGRLSYI TYQF KKASYNDK
Sbjct: 225 KKASYNDKLQHNHINLLHLDILNNEEIFKGYPWGRLSYILTYQFLKKASYNDK 277

The following BLAST results are available for this feature:
BLAST of PI0028968 vs.
Match NameE-valueIdentityDescription
BLAST of PI0028968 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T9I02.0e-1069.81DNA-directed RNA polymerase I subunit RPA1-like OS=Cucumis melo var. makuwa OX=1... [more]
BLAST of PI0028968 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038287.14.1e-1069.81DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa][more]
BLAST of PI0028968 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028968.1PI0028968.1mRNA