PI0028940 (gene) Melon (PI 482460) v1

Overview


Name	PI0028940
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr04: 19562708 .. 19564052 (-)
RNA-Seq Expression	PI0028940
Synteny	PI0028940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGTTTGATCTTGCTATTCGTCATGCTGACTTGGTTGAGCCAGCTGTTCAGGGAAACTGGTTCACTTGGACTAGCAAGGTGTGAGGTTCAGGTTGGTTGCGTCGGCTTGATCATATTTTGGTTAATGAGCAGGGGTTAATGGCTTGGCCTAGTCTGCGTGTTACTATTTTGCCTTGGGGAATTTCTGACCATTCCCCTATTTTATTCTATCCTGGTGTTGAGCAGCAGAGGCGTATTATTTCGTTTTGTTTCTTTATCATTGGGTGGAGGATACGTCTTTCAGTGATGTGGTGTCTTCGGTTTGGGTGAGAAGGTTGGGTGTGTCTCCGTTAGTGAGTCTTATGCAGAATTTGCATTATCTGAAACCTGTGCTTCGTAGACATTTTGGTAGACATATCAGTGGCCTTAGTGAGGAGGTGTGCTTGGCTAAAGAGGCTATGGATAGGGCCCAACGAGAGGTTGAGCGGGATCCTGGGTCTGTGGAGAGGAGTCGTGATGCTAGTGTTGCGACTGATGCCTTTTGGTCAGCTATCCGTCAGGAAGAAGCCTCTCTCCGTAAAAAATCATGGGTTAGGTGGTTAGAGCTTGGGGATCAAAATTCTACCTTTTTTCATCGCTTGATTTGTTCCCGTATTGGTCGTAATAATTTGCTTTCTACTGTTGATTTTGAGGGTATTTGGGTGACGTCCCATGAGAGGTTGATGCAGGTGGCTGTCAACTTTTTTCGTAATAGTCTTGGATCCCAGGTGGTTGGTTATAAGGAGCTTTATCCTGTGTAGGAGGAGGTGGTTCAGTTTAGGTGGACGGAGGAGTGTTGTCATGCGTTACAGGCTCCGATTAGGCGTGAGGAGATCAGGAGGGTGGTTTTTGCTATGGATAGTAGTAAGGCTCCTGGTCTTGATGGTTTTTCGGCAGGCTTCTTCAAAGCTGCTTGGAACACGGTTAGTGAGGATTTTTGTGATGTTGTGATGCATTTCTTTGAGACGTGTTATCTGCCTCATGGGGTTAATGCTACTGCGATCACCCTCATTCCCAAACGTAATGGGGCTGATCGTATGGAGGATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCGTGTGTGGCTTCATTCTTTTATCAGTGGTAATCAATCAACCTATGTTGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGGTGGGGGATTATCATGGTTCTTCGGGTCCGCCTAGGTGTGCGATGAAGGTGGATCTTCAGAAGGCTTATGATTCGGTGAATTGGGATTTTCTGTTTAGCTTGTTGCTTGCTATTAG

mRNA sequence

ATGGAGGAGTTTGATCTTGCTATTCGTCATGCTGACTTGGTTGAGCCAGCTGTTCAGGGAAACTGGTTCACTTGGACTAGCAAGGATACGTCTTTCAGTGATGTGGTGTCTTCGGTTTGGGTGAGAAGGTTGGGTGTGTCTCCGTTAGTGAGTCTTATGCAGAATTTGCATTATCTGAAACCTGTGCTTCGTAGACATTTTGGTAGACATATCAGTGGCCTTAGTGAGGAGGTGTGCTTGGCTAAAGAGGCTATGGATAGGGCCCAACGAGAGGTTGAGCGGGATCCTGGGTCTGTGGAGAGGAGTCGTGATGCTAGTGTTGCGACTGATGCCTTTTGGTCAGCTATCCGTCAGGAAGAAGCCTCTCTCCGTAAAAAATCATGGGTTAGGTGGTTAGAGCTTGGGGATCAAAATTCTACCTTTTTTCATCGCTTGATTTGTTCCCGTATTGGTCGTAATAATTTGCTTTCTACTGTTGATTTTGAGGGTATTTGGGTGACGTCCCATGAGAGGTTGATGCAGGAGGAGGTGGTTCAGTTTAGGTGGACGGAGGAGTGTTGTCATGCGTTACAGGCTCCGATTAGGCGTGAGGAGATCAGGAGGGTGGTTTTTGCTATGGATAGTAGTAAGGCTCCTGGTCTTGATGGTTTTTCGGCAGGCTTCTTCAAAGCTGCTTGGAACACGGTTAGTGAGGATTTTTGTGATGTTGTGATGCATTTCTTTGAGACGTGTTATCTGCCTCATGGGGTTAATGCTACTGCGATCACCCTCATTCCCAAACGTAATGGGGCTGATCGTATGGAGGATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCGTGTGTGGCTTCATTCTTTTATCAGTGGTAATCAATCAACCTATGTTGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGGTGGGGGATTATCATGGTTCTTCGGGTCCGCCTAGGTGTGCGATGAAGCTTGTTGCTTGCTATTAG

Coding sequence (CDS)

ATGGAGGAGTTTGATCTTGCTATTCGTCATGCTGACTTGGTTGAGCCAGCTGTTCAGGGAAACTGGTTCACTTGGACTAGCAAGGATACGTCTTTCAGTGATGTGGTGTCTTCGGTTTGGGTGAGAAGGTTGGGTGTGTCTCCGTTAGTGAGTCTTATGCAGAATTTGCATTATCTGAAACCTGTGCTTCGTAGACATTTTGGTAGACATATCAGTGGCCTTAGTGAGGAGGTGTGCTTGGCTAAAGAGGCTATGGATAGGGCCCAACGAGAGGTTGAGCGGGATCCTGGGTCTGTGGAGAGGAGTCGTGATGCTAGTGTTGCGACTGATGCCTTTTGGTCAGCTATCCGTCAGGAAGAAGCCTCTCTCCGTAAAAAATCATGGGTTAGGTGGTTAGAGCTTGGGGATCAAAATTCTACCTTTTTTCATCGCTTGATTTGTTCCCGTATTGGTCGTAATAATTTGCTTTCTACTGTTGATTTTGAGGGTATTTGGGTGACGTCCCATGAGAGGTTGATGCAGGAGGAGGTGGTTCAGTTTAGGTGGACGGAGGAGTGTTGTCATGCGTTACAGGCTCCGATTAGGCGTGAGGAGATCAGGAGGGTGGTTTTTGCTATGGATAGTAGTAAGGCTCCTGGTCTTGATGGTTTTTCGGCAGGCTTCTTCAAAGCTGCTTGGAACACGGTTAGTGAGGATTTTTGTGATGTTGTGATGCATTTCTTTGAGACGTGTTATCTGCCTCATGGGGTTAATGCTACTGCGATCACCCTCATTCCCAAACGTAATGGGGCTGATCGTATGGAGGATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCGTGTGTGGCTTCATTCTTTTATCAGTGGTAATCAATCAACCTATGTTGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGGTGGGGGATTATCATGGTTCTTCGGGTCCGCCTAGGTGTGCGATGAAGCTTGTTGCTTGCTATTAG

Protein sequence

MEEFDLAIRHADLVEPAVQGNWFTWTSKDTSFSDVVSSVWVRRLGVSPLVSLMQNLHYLKPVLRRHFGRHISGLSEEVCLAKEAMDRAQREVERDPGSVERSRDASVATDAFWSAIRQEEASLRKKSWVRWLELGDQNSTFFHRLICSRIGRNNLLSTVDFEGIWVTSHERLMQEEVVQFRWTEECCHALQAPIRREEIRRVVFAMDSSKAPGLDGFSAGFFKAAWNTVSEDFCDVVMHFFETCYLPHGVNATAITLIPKRNGADRMEDYRPISCCNVVYKCISKILADRLRVWLHSFISGNQSTYVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMKLVACY

Homology

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BLAST of PI0028940 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.8e-17
Identity = 43/134 (32.09%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 190 LQAPIRREEIRRVVFAMDSSKAPGLDGFSAGFFKAAWNTVSEDFCDVVMHFFETCYLPHG 249
           L+ PI  +E+ + +  M  +K+PGLDG +  FF+  W+T+  DF  V+   F+   LP  
Sbjct: 445 LETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLS 504

Query: 250 VNATAITLIPKRNGADRMEDYRPISCCNVVYKCISKILADRLRVWLHSFISGNQSTYVVG 309
                ++L+PK+     ++++RP+S  +  YK ++K ++ RL+  L   I  +QS  V G
Sbjct: 505 CRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPG 564

Query: 310 RSIVDNILLCQEMV 324
           R+I DN+ L ++++
Sbjct: 565 RTIFDNVFLIRDLL 578

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BLAST of PI0028940 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-11
Identity = 42/125 (33.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 190 LQAPIRREEIRRVVFAMDSSKAPGLDGFSAGFFKAAWNTVSEDFCDVVMHFFETC----Y 249
           L +PI  +EI  V+ ++ + K+PG DGFSA F++    T  ED   ++   F        
Sbjct: 456 LNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQ----TFKEDLIPILHKLFHKIEVEGT 515

Query: 250 LPHGVNATAITLIPK-RNGADRMEDYRPISCCNVVYKCISKILADRLRVWLHSFISGNQS 309
           LP+      ITLIPK +    ++E++RPIS  N+  K ++KILA+R++  + + I  +Q 
Sbjct: 516 LPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQV 575

[Close]

BLAST of PI0028940 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 3.6e-130
Identity = 237/397 (59.70%), Postives = 282/397 (71.03%), Query Frame = 0


Query: 1   MEEFDLAIRHADLVEPAVQGNWFTWTSK-------------------------------- 60
           ME+FDLA R ADLVEP+VQGNWFTWTSK                                
Sbjct: 429 MEDFDLATRDADLVEPSVQGNWFTWTSKVHGSGMLRRLDRILVNDEWLSAWPTLLVLQSL 488

Query: 61  --DTSFSDVVSSVWVRRLGVSPLVSLMQNLHYLKPVLRRHFGRHISGLSEEVCLAKEAMD 120
             D SF +VV+ +W R  GVSPLVSLM+NL  LKP LRR FGRHI  L+EEV +AKE MD
Sbjct: 489 VEDPSFIEVVARMWGRHEGVSPLVSLMRNLQNLKPTLRRRFGRHIQSLNEEVHIAKENMD 548

Query: 121 RAQREVERDPGSVERSRDASVATDAFWSAIRQEEASLRKKSWVRWLELGDQNSTFFHRLI 180
           RAQREVE +P S   SR   +AT+AFW+A+R EEASLR+KS +RWLELGDQN+ FFHR +
Sbjct: 549 RAQREVEHNPMSDVLSRQVGLATEAFWTAVRLEEASLRQKSRIRWLELGDQNTAFFHRPV 608

Query: 181 CSRIGRNNLLSTVDFEGIWVTSHERLMQ------------------------EEVVQFRW 240
            SR+ RN+LLS VD +G  V+SH+ ++Q                        +++VQFRW
Sbjct: 609 RSRMSRNSLLSLVDADGSRVSSHDGVVQLAVNYFRNSLGSQEIGYRELFPVIDDIVQFRW 668

Query: 241 TEECCHALQAPIRREEIRRVVFAMDSSKAPGLDGFSAGFFKAAWNTVSEDFCDVVMHFFE 300
           +EECC ALQ PI REE+RRV+F+MDS KAPG DGFS GFFK AW+ V EDFCDVV+HFFE
Sbjct: 669 SEECCQALQIPISREEVRRVLFSMDSGKAPGPDGFSVGFFKGAWSVVEEDFCDVVLHFFE 728

Query: 301 TCYLPHGVNATAITLIPKRNGADRMEDYRPISCCNVVYKCISKILADRLRVWLHSFISGN 340
           TCYLP GVNAT ITLIPKR GA++ME++RPISCCNV+YKCISKILADRLRVWL SFI  N
Sbjct: 729 TCYLPIGVNATVITLIPKRRGAEQMEEFRPISCCNVIYKCISKILADRLRVWLPSFIGSN 788

[Close]

BLAST of PI0028940 vs. ExPASy TrEMBL
Match: A0A5A7TZS0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00020 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 4.9e-127
Identity = 238/427 (55.74%), Postives = 286/427 (66.98%), Query Frame = 0


Query: 1   MEEFDLAIRHADLVEPAVQGNWFTWTSK-------------------------------- 60
           MEEFDLAIR ADLVEP+VQGNWFTWTSK                                
Sbjct: 123 MEEFDLAIRDADLVEPSVQGNWFTWTSKVQGSGMLRRLDRVLVNDEWLSAWPTMRINVLP 182

Query: 61  --------------------------------DTSFSDVVSSVWVRRLGVSPLVSLMQNL 120
                                           + SF +VV+ +W R  GVS LVSLM+NL
Sbjct: 183 WGISDHSPILFYPSFQVNSRVVSFRFFNHWVEEPSFIEVVARMWSRHEGVSLLVSLMRNL 242

Query: 121 HYLKPVLRRHFGRHISGLSEEVCLAKEAMDRAQREVERDPGSVERSRDASVATDAFWSAI 180
           H+LKP+LRR FGRHI  LSEEV +AKEAMD AQREVER+P S   SR AS+AT+ FW+A+
Sbjct: 243 HHLKPILRRQFGRHIKSLSEEVHIAKEAMDIAQREVERNPLSDVLSRQASLATETFWTAV 302

Query: 181 RQEEASLRKKSWVRWLELGDQNSTFFHRLICSRIGRNNLLSTVDFEGIWVTSHERLMQ-- 240
           R EEASLR+KS VRWL LGDQN+ FFHR + SR+ RN+LLS VD +G  V+SH+ + Q  
Sbjct: 303 RLEEASLRQKSKVRWLNLGDQNTAFFHRSVRSRLSRNSLLSLVDSDGSRVSSHDGVAQMA 362

Query: 241 ----------------------EEVVQFRWTEECCHALQAPIRREEIRRVVFAMDSSKAP 300
                                 +++VQF+W+EECC ALQ PI REE+RRV+F+MDS KAP
Sbjct: 363 VNYFSNSLGSQEIGYRELSPIIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAP 422

Query: 301 GLDGFSAGFFKAAWNTVSEDFCDVVMHFFETCYLPHGVNATAITLIPKRNGADRMEDYRP 340
           G DGFS GF+K AW+ V EDFC+ V+HFFETCYLP GVNATAITLIPK  GA+R+ED+RP
Sbjct: 423 GPDGFSVGFYKGAWSVVGEDFCNAVLHFFETCYLPIGVNATAITLIPKHIGAERLEDFRP 482

[Close]

BLAST of PI0028940 vs. ExPASy TrEMBL
Match: A0A5D3DXQ8 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001370 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 1.2e-114
Identity = 213/340 (62.65%), Postives = 251/340 (73.82%), Query Frame = 0


Query: 1   MEEFDLAIRHADLVEPAVQGNWFTWTSK---------------DTSFSDVVSSVWVRRLG 60
           ME+FDLAIR ADLVEP+VQGNWFTWTSK               D SF +VVS +W R  G
Sbjct: 333 MEDFDLAIRDADLVEPSVQGNWFTWTSKNRRVVSFRFFNHWMEDPSFIEVVSRMWGRNEG 392

Query: 61  VSPLVSLMQNLHYLKPVLRRHFGRHISGLSEEVCLAKEAMDRAQREVERDPGSVERSRDA 120
           VSPLVSL++NL +LK  +RRHFGRHI  LSEEV  AKEAMDRAQREV+R+P S   SR A
Sbjct: 393 VSPLVSLIRNLQHLKSTIRRHFGRHIQSLSEEVRNAKEAMDRAQREVKRNPMSDVLSRQA 452

Query: 121 SVATDAFWSAIRQEEASLRKKSWVRWLELGDQNSTFFHRLICSR---IGRNNLLSTVDFE 180
            +AT+AFW+ +R EEASL +K  +RWLELG+QN+ FFHR + SR   I    L   +D  
Sbjct: 453 GLATEAFWTTVRLEEASLHQKFRIRWLELGNQNTAFFHRSVSSRSQEICYRELSPVID-- 512

Query: 181 GIWVTSHERLMQEEVVQFRWTEECCHALQAPIRREEIRRVVFAMDSSKAPGLDGFSAGFF 240
                        ++VQFRW+EECC ALQ PI REE+RRV+F+MDS KA G DGFS  FF
Sbjct: 513 -------------DIVQFRWSEECCQALQVPISREEVRRVLFSMDSRKASGHDGFSVSFF 572

Query: 241 KAAWNTVSEDFCDVVMHFFETCYLPHGVNATAITLIPKRNGADRMEDYRPISCCNVVYKC 300
           K  W+ V EDFCDV++HFFETCYLP GVNAT ITLIPKR GA+ +E++RPIS CNV+YKC
Sbjct: 573 KGDWSVVREDFCDVILHFFETCYLPLGVNATTITLIPKRRGAECIEEFRPISYCNVIYKC 632

Query: 301 ISKILADRLRVWLHSFISGNQSTYVVGRSIVDNILLCQEM 323
           ISKILADRL VWL SFISGNQS ++ GRSI+DNILLCQE+
Sbjct: 633 ISKILADRLCVWLPSFISGNQSAFIPGRSIIDNILLCQEL 657

[Close]

BLAST of PI0028940 vs. ExPASy TrEMBL
Match: A0A5A7U4M4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001420 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.6e-114
Identity = 213/340 (62.65%), Postives = 251/340 (73.82%), Query Frame = 0


Query: 1   MEEFDLAIRHADLVEPAVQGNWFTWTSK---------------DTSFSDVVSSVWVRRLG 60
           ME+FDLAIR ADLVEP+VQGNWFTWTSK               D SF +VVS +W R  G
Sbjct: 333 MEDFDLAIRDADLVEPSVQGNWFTWTSKNRRVVSFRFFNHWMEDPSFIEVVSRMWGRNEG 392

Query: 61  VSPLVSLMQNLHYLKPVLRRHFGRHISGLSEEVCLAKEAMDRAQREVERDPGSVERSRDA 120
           VSPLVSL++NL +LK  +RRHFGRHI  LSEEV  AKEAMDRAQREV+R+P S   SR A
Sbjct: 393 VSPLVSLIRNLQHLKSTIRRHFGRHIQSLSEEVRNAKEAMDRAQREVKRNPMSDVLSRQA 452

Query: 121 SVATDAFWSAIRQEEASLRKKSWVRWLELGDQNSTFFHRLICSR---IGRNNLLSTVDFE 180
            +AT+AFW+ +R EEASL +K  +RWLELG+QN+ FFHR + SR   I    L   +D  
Sbjct: 453 GLATEAFWTKVRLEEASLHQKFRIRWLELGNQNTAFFHRSVSSRSQEICYRELSPVID-- 512

Query: 181 GIWVTSHERLMQEEVVQFRWTEECCHALQAPIRREEIRRVVFAMDSSKAPGLDGFSAGFF 240
                        ++VQFRW+EECC ALQ PI REE+RRV+F+MDS KA G DGFS  FF
Sbjct: 513 -------------DIVQFRWSEECCQALQVPISREEVRRVLFSMDSRKASGHDGFSVSFF 572

Query: 241 KAAWNTVSEDFCDVVMHFFETCYLPHGVNATAITLIPKRNGADRMEDYRPISCCNVVYKC 300
           K  W+ V EDFCDV++HFFETCYLP GVNAT ITLIPKR GA+ +E++RPIS CNV+YKC
Sbjct: 573 KGDWSVVREDFCDVILHFFETCYLPLGVNATTITLIPKRRGAECIEEFRPISYCNVIYKC 632

Query: 301 ISKILADRLRVWLHSFISGNQSTYVVGRSIVDNILLCQEM 323
           ISKILADRL VWL SFISGNQS ++ GRSI+DNILLCQE+
Sbjct: 633 ISKILADRLCVWLPSFISGNQSAFIPGRSIIDNILLCQEL 657

[Close]

BLAST of PI0028940 vs. ExPASy TrEMBL
Match: A0A5D3DSA8 (Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002870 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 8.4e-103
Identity = 187/295 (63.39%), Postives = 226/295 (76.61%), Query Frame = 0


Query: 53  MQNLHYLKPVLRRHFGRHISGLSEEVCLAKEAMDRAQREVERDPGSVERSRDASVATDAF 112
           M+NLH LKP LRR FGRHI  LSEEV +AKE MDRAQREVER+P S   SR A +AT++F
Sbjct: 1   MRNLHNLKPALRRCFGRHIQRLSEEVRIAKEGMDRAQREVERNPMSDVLSRQAGLATESF 60

Query: 113 WSAIRQEEASLRKKSWVRWLELGDQNSTFFHRLICSRIGRNNLLSTVDFEGIWVTSHERL 172
           W+A+R EEASLR+KS ++WL LGDQN+ FFHR + SR+ RN+LLS VD +G  V +H+ +
Sbjct: 61  WTAVRLEEASLRQKSRIQWLNLGDQNTAFFHRSVRSRMSRNSLLSLVDSDGSRV-AHDGV 120

Query: 173 MQ-----------------------EEVVQFRWTEECCHALQAPIRREEIRRVVFAMDSS 232
           +                        +++VQFRW E+CC ALQ PI R+E+RRV+F+MD+ 
Sbjct: 121 LSWQLIIFVTVWDLRFGYRELTPVIDDIVQFRWPEKCCQALQLPISRDEVRRVLFSMDNG 180

Query: 233 KAPGLDGFSAGFFKAAWNTVSEDFCDVVMHFFETCYLPHGVNATAITLIPKRNGADRMED 292
           KAPG DGFS GFFK  W  V EDFCD V+HFFETCYLP GVNATAITLIPKR+GA+RMED
Sbjct: 181 KAPGPDGFSLGFFKGTWTVVGEDFCDAVLHFFETCYLPSGVNATAITLIPKRSGAERMED 240

Query: 293 YRPISCCNVVYKCISKILADRLRVWLHSFISGNQSTYVVGRSIVDNILLCQEMVG 325
           +RPISCCNV+YKCISKILADRLRVWL SFIS NQS ++ GRSI++NILLCQE+ G
Sbjct: 241 FRPISCCNVLYKCISKILADRLRVWLPSFISSNQSAFIPGRSIIENILLCQELFG 294

[Close]

BLAST of PI0028940 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 474.6 bits (1220), Expect = 7.5e-130
Identity = 237/397 (59.70%), Postives = 282/397 (71.03%), Query Frame = 0


Query: 1   MEEFDLAIRHADLVEPAVQGNWFTWTSK-------------------------------- 60
           ME+FDLA R ADLVEP+VQGNWFTWTSK                                
Sbjct: 429 MEDFDLATRDADLVEPSVQGNWFTWTSKVHGSGMLRRLDRILVNDEWLSAWPTLLVLQSL 488

Query: 61  --DTSFSDVVSSVWVRRLGVSPLVSLMQNLHYLKPVLRRHFGRHISGLSEEVCLAKEAMD 120
             D SF +VV+ +W R  GVSPLVSLM+NL  LKP LRR FGRHI  L+EEV +AKE MD
Sbjct: 489 VEDPSFIEVVARMWGRHEGVSPLVSLMRNLQNLKPTLRRRFGRHIQSLNEEVHIAKENMD 548

Query: 121 RAQREVERDPGSVERSRDASVATDAFWSAIRQEEASLRKKSWVRWLELGDQNSTFFHRLI 180
           RAQREVE +P S   SR   +AT+AFW+A+R EEASLR+KS +RWLELGDQN+ FFHR +
Sbjct: 549 RAQREVEHNPMSDVLSRQVGLATEAFWTAVRLEEASLRQKSRIRWLELGDQNTAFFHRPV 608

Query: 181 CSRIGRNNLLSTVDFEGIWVTSHERLMQ------------------------EEVVQFRW 240
            SR+ RN+LLS VD +G  V+SH+ ++Q                        +++VQFRW
Sbjct: 609 RSRMSRNSLLSLVDADGSRVSSHDGVVQLAVNYFRNSLGSQEIGYRELFPVIDDIVQFRW 668

Query: 241 TEECCHALQAPIRREEIRRVVFAMDSSKAPGLDGFSAGFFKAAWNTVSEDFCDVVMHFFE 300
           +EECC ALQ PI REE+RRV+F+MDS KAPG DGFS GFFK AW+ V EDFCDVV+HFFE
Sbjct: 669 SEECCQALQIPISREEVRRVLFSMDSGKAPGPDGFSVGFFKGAWSVVEEDFCDVVLHFFE 728

Query: 301 TCYLPHGVNATAITLIPKRNGADRMEDYRPISCCNVVYKCISKILADRLRVWLHSFISGN 340
           TCYLP GVNAT ITLIPKR GA++ME++RPISCCNV+YKCISKILADRLRVWL SFI  N
Sbjct: 729 TCYLPIGVNATVITLIPKRRGAEQMEEFRPISCCNVIYKCISKILADRLRVWLPSFIGSN 788

[Close]

BLAST of PI0028940 vs. NCBI nr
Match: KAA0046851.1 (uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 464.2 bits (1193), Expect = 1.0e-126
Identity = 238/427 (55.74%), Postives = 286/427 (66.98%), Query Frame = 0


Query: 1   MEEFDLAIRHADLVEPAVQGNWFTWTSK-------------------------------- 60
           MEEFDLAIR ADLVEP+VQGNWFTWTSK                                
Sbjct: 123 MEEFDLAIRDADLVEPSVQGNWFTWTSKVQGSGMLRRLDRVLVNDEWLSAWPTMRINVLP 182

Query: 61  --------------------------------DTSFSDVVSSVWVRRLGVSPLVSLMQNL 120
                                           + SF +VV+ +W R  GVS LVSLM+NL
Sbjct: 183 WGISDHSPILFYPSFQVNSRVVSFRFFNHWVEEPSFIEVVARMWSRHEGVSLLVSLMRNL 242

Query: 121 HYLKPVLRRHFGRHISGLSEEVCLAKEAMDRAQREVERDPGSVERSRDASVATDAFWSAI 180
           H+LKP+LRR FGRHI  LSEEV +AKEAMD AQREVER+P S   SR AS+AT+ FW+A+
Sbjct: 243 HHLKPILRRQFGRHIKSLSEEVHIAKEAMDIAQREVERNPLSDVLSRQASLATETFWTAV 302

Query: 181 RQEEASLRKKSWVRWLELGDQNSTFFHRLICSRIGRNNLLSTVDFEGIWVTSHERLMQ-- 240
           R EEASLR+KS VRWL LGDQN+ FFHR + SR+ RN+LLS VD +G  V+SH+ + Q  
Sbjct: 303 RLEEASLRQKSKVRWLNLGDQNTAFFHRSVRSRLSRNSLLSLVDSDGSRVSSHDGVAQMA 362

Query: 241 ----------------------EEVVQFRWTEECCHALQAPIRREEIRRVVFAMDSSKAP 300
                                 +++VQF+W+EECC ALQ PI REE+RRV+F+MDS KAP
Sbjct: 363 VNYFSNSLGSQEIGYRELSPIIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAP 422

Query: 301 GLDGFSAGFFKAAWNTVSEDFCDVVMHFFETCYLPHGVNATAITLIPKRNGADRMEDYRP 340
           G DGFS GF+K AW+ V EDFC+ V+HFFETCYLP GVNATAITLIPK  GA+R+ED+RP
Sbjct: 423 GPDGFSVGFYKGAWSVVGEDFCNAVLHFFETCYLPIGVNATAITLIPKHIGAERLEDFRP 482

[Close]

BLAST of PI0028940 vs. NCBI nr
Match: TYK28312.1 (uncharacterized protein E5676_scaffold600G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 422.9 bits (1086), Expect = 2.6e-114
Identity = 213/340 (62.65%), Postives = 251/340 (73.82%), Query Frame = 0


Query: 1   MEEFDLAIRHADLVEPAVQGNWFTWTSK---------------DTSFSDVVSSVWVRRLG 60
           ME+FDLAIR ADLVEP+VQGNWFTWTSK               D SF +VVS +W R  G
Sbjct: 333 MEDFDLAIRDADLVEPSVQGNWFTWTSKNRRVVSFRFFNHWMEDPSFIEVVSRMWGRNEG 392

Query: 61  VSPLVSLMQNLHYLKPVLRRHFGRHISGLSEEVCLAKEAMDRAQREVERDPGSVERSRDA 120
           VSPLVSL++NL +LK  +RRHFGRHI  LSEEV  AKEAMDRAQREV+R+P S   SR A
Sbjct: 393 VSPLVSLIRNLQHLKSTIRRHFGRHIQSLSEEVRNAKEAMDRAQREVKRNPMSDVLSRQA 452

Query: 121 SVATDAFWSAIRQEEASLRKKSWVRWLELGDQNSTFFHRLICSR---IGRNNLLSTVDFE 180
            +AT+AFW+ +R EEASL +K  +RWLELG+QN+ FFHR + SR   I    L   +D  
Sbjct: 453 GLATEAFWTTVRLEEASLHQKFRIRWLELGNQNTAFFHRSVSSRSQEICYRELSPVID-- 512

Query: 181 GIWVTSHERLMQEEVVQFRWTEECCHALQAPIRREEIRRVVFAMDSSKAPGLDGFSAGFF 240
                        ++VQFRW+EECC ALQ PI REE+RRV+F+MDS KA G DGFS  FF
Sbjct: 513 -------------DIVQFRWSEECCQALQVPISREEVRRVLFSMDSRKASGHDGFSVSFF 572

Query: 241 KAAWNTVSEDFCDVVMHFFETCYLPHGVNATAITLIPKRNGADRMEDYRPISCCNVVYKC 300
           K  W+ V EDFCDV++HFFETCYLP GVNAT ITLIPKR GA+ +E++RPIS CNV+YKC
Sbjct: 573 KGDWSVVREDFCDVILHFFETCYLPLGVNATTITLIPKRRGAECIEEFRPISYCNVIYKC 632

Query: 301 ISKILADRLRVWLHSFISGNQSTYVVGRSIVDNILLCQEM 323
           ISKILADRL VWL SFISGNQS ++ GRSI+DNILLCQE+
Sbjct: 633 ISKILADRLCVWLPSFISGNQSAFIPGRSIIDNILLCQEL 657

[Close]

BLAST of PI0028940 vs. NCBI nr
Match: KAA0048521.1 (uncharacterized protein E6C27_scaffold61G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 422.5 bits (1085), Expect = 3.4e-114
Identity = 213/340 (62.65%), Postives = 251/340 (73.82%), Query Frame = 0


Query: 1   MEEFDLAIRHADLVEPAVQGNWFTWTSK---------------DTSFSDVVSSVWVRRLG 60
           ME+FDLAIR ADLVEP+VQGNWFTWTSK               D SF +VVS +W R  G
Sbjct: 333 MEDFDLAIRDADLVEPSVQGNWFTWTSKNRRVVSFRFFNHWMEDPSFIEVVSRMWGRNEG 392

Query: 61  VSPLVSLMQNLHYLKPVLRRHFGRHISGLSEEVCLAKEAMDRAQREVERDPGSVERSRDA 120
           VSPLVSL++NL +LK  +RRHFGRHI  LSEEV  AKEAMDRAQREV+R+P S   SR A
Sbjct: 393 VSPLVSLIRNLQHLKSTIRRHFGRHIQSLSEEVRNAKEAMDRAQREVKRNPMSDVLSRQA 452

Query: 121 SVATDAFWSAIRQEEASLRKKSWVRWLELGDQNSTFFHRLICSR---IGRNNLLSTVDFE 180
            +AT+AFW+ +R EEASL +K  +RWLELG+QN+ FFHR + SR   I    L   +D  
Sbjct: 453 GLATEAFWTKVRLEEASLHQKFRIRWLELGNQNTAFFHRSVSSRSQEICYRELSPVID-- 512

Query: 181 GIWVTSHERLMQEEVVQFRWTEECCHALQAPIRREEIRRVVFAMDSSKAPGLDGFSAGFF 240
                        ++VQFRW+EECC ALQ PI REE+RRV+F+MDS KA G DGFS  FF
Sbjct: 513 -------------DIVQFRWSEECCQALQVPISREEVRRVLFSMDSRKASGHDGFSVSFF 572

Query: 241 KAAWNTVSEDFCDVVMHFFETCYLPHGVNATAITLIPKRNGADRMEDYRPISCCNVVYKC 300
           K  W+ V EDFCDV++HFFETCYLP GVNAT ITLIPKR GA+ +E++RPIS CNV+YKC
Sbjct: 573 KGDWSVVREDFCDVILHFFETCYLPLGVNATTITLIPKRRGAECIEEFRPISYCNVIYKC 632

Query: 301 ISKILADRLRVWLHSFISGNQSTYVVGRSIVDNILLCQEM 323
           ISKILADRL VWL SFISGNQS ++ GRSI+DNILLCQE+
Sbjct: 633 ISKILADRLCVWLPSFISGNQSAFIPGRSIIDNILLCQEL 657

[Close]

BLAST of PI0028940 vs. NCBI nr
Match: XP_031740402.1 (uncharacterized protein LOC116403409 [Cucumis sativus] >XP_031740413.1 uncharacterized protein LOC116403417 [Cucumis sativus] >XP_031745405.1 uncharacterized protein LOC116405607 [Cucumis sativus] >XP_031745422.1 uncharacterized protein LOC116405638 [Cucumis sativus] >XP_031745640.1 uncharacterized protein LOC116406072 [Cucumis sativus])

HSP 1 Score: 408.7 bits (1049), Expect = 5.0e-110
Identity = 198/349 (56.73%), Postives = 248/349 (71.06%), Query Frame = 0


Query: 15  EPAVQGNWFTWTSKDTSFSDVVSSVWVRRLGVSPLVSLMQNLHYLKPVLRRHFGRHISGL 74
           +  V   +F    ++ SF DVVSS W +   VSP+V++++NL  LK +LRRHFGRHI  +
Sbjct: 26  QQVVSFRFFNHWVQEASFMDVVSSAWTKDTRVSPIVNIVRNLRNLKSILRRHFGRHIRTI 85

Query: 75  SEEVCLAKEAMDRAQREVERDPGSVERSRDASVATDAFWSAIRQEEASLRKKSWVRWLEL 134
           SE+V LA + MDRA+RE+E +  S E S  AS+AT  FW A+R EEA++R+KS  RWL+L
Sbjct: 86  SEDVRLANDTMDRAEREMETNSLSEEASNHASLATVNFWKAVRVEEAAMRQKSRTRWLKL 145

Query: 135 GDQNSTFFHRLICSRIGRNNLLSTVDFEGIWVTSHERLMQ-------------------- 194
            DQN+ FFHR + SR   N L S +D +G  +T+H+++ Q                    
Sbjct: 146 DDQNTAFFHRSVRSRQSSNALRSVIDPDGNRLTNHDQVTQVVVNYFKDSLGSQNISYGEL 205

Query: 195 ----EEVVQFRWTEECCHALQAPIRREEIRRVVFAMDSSKAPGLDGFSAGFFKAAWNTVS 254
               EE+VQFRWTEECC ALQ+PI REE+RRV+F+MD  KAPG DG+S GFFK AW  V 
Sbjct: 206 STSIEEIVQFRWTEECCQALQSPIGREEVRRVLFSMDGGKAPGPDGYSVGFFKGAWTVVG 265

Query: 255 EDFCDVVMHFFETCYLPHGVNATAITLIPKRNGADRMEDYRPISCCNVVYKCISKILADR 314
           E FCDVV+HFFET Y P GVN TAITLIPKRNGADR+ED+ PISCC+V+YKCIS+ILADR
Sbjct: 266 EGFCDVVLHFFETNYFPQGVNTTAITLIPKRNGADRLEDFSPISCCSVIYKCISRILADR 325

Query: 315 LRVWLHSFISGNQSTYVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMKL 340
           LRVWL SF+SGNQ  ++ GRSI+DNILLCQE+VG YH   G PRC MK+
Sbjct: 326 LRVWLPSFVSGNQPAFIPGRSIIDNILLCQELVGAYHLHRGKPRCTMKV 374

[Close]

BLAST of PI0028940 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-24
Identity = 84/290 (28.97%), Postives = 138/290 (47.59%), Query Frame = 0


Query: 22  WFTWTSKDTSFSDVVSSVWVRRLGV-SPLVSLMQNLHYLKPVLRRHFGRHISGLSEEVCL 81
           +F++ S   +F   ++  W  ++ V S + SL ++L   K   +    +    +  +   
Sbjct: 334 YFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKE 393

Query: 82  AKEAMDRAQREVERDPG-SVERSRDASVATDAFWSAIRQEEASLRKKSWVRWLELGDQNS 141
           A ++++  Q ++  +P  S+ R    +     F++A    E+  R+KS ++WL+ GD N+
Sbjct: 394 ALDSLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAAL--ESFYRQKSRIKWLQDGDANT 453

Query: 142 TFFHRLICSRIGRN--------------NLLSTVDFEGIWVT----SHERLMQEEVVQ-- 201
            FFH++I +   +N              N+    +    + T    S   ++  + VQ  
Sbjct: 454 RFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRI 513

Query: 202 -----FRWTEECCHALQAPIRREEIRRVVFAMDSSKAPGLDGFSAGFFKAAWNTVSEDFC 261
                FR  +     L A    +EI   VFAM  +KAPG D F+A FF  +W  V +   
Sbjct: 514 KDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTI 573

Query: 262 DVVMHFFETCYLPHGVNATAITLIPKRNGADRMEDYRPISCCNVVYKCIS 285
             V  FF T +L    NATAITLIPK  G D++  +RP+SCC VVYK I+
Sbjct: 574 AAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621

The following BLAST results are available for this feature:

BLAST of PI0028940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P14381	8.8e-17	32.09	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV...	[more]
P11369	1.5e-11	33.60	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE...	[more]

BLAST of PI0028940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5J2	3.6e-130	59.70	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5A7TZS0	4.9e-127	55.74	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DXQ8	1.2e-114	62.65	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7U4M4	1.6e-114	62.65	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DSA8	8.4e-103	63.39	Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa ...	[more]

BLAST of PI0028940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062888.1	7.5e-130	59.70	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
KAA0046851.1	1.0e-126	55.74	uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]	[more]
TYK28312.1	2.6e-114	62.65	uncharacterized protein E5676_scaffold600G001370 [Cucumis melo var. makuwa]	[more]
KAA0048521.1	3.4e-114	62.65	uncharacterized protein E6C27_scaffold61G001420 [Cucumis melo var. makuwa]	[more]
XP_031740402.1	5.0e-110	56.73	uncharacterized protein LOC116403409 [Cucumis sativus] >XP_031740413.1 uncharact...	[more]

BLAST of PI0028940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	2.0e-24	28.97	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 258..327 e-value: 1.2E-10 score: 41.2
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 65..338
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 65..338
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 190..322

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028940.1	PI0028940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane