PI0028909 (gene) Melon (PI 482460) v1

Overview


Name	PI0028909
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr05: 8155124 .. 8159324 (+)
RNA-Seq Expression	PI0028909
Synteny	PI0028909

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACACTGAATGTGTAATTCCTAAGGACAATGAGGACAAGGAAGATGATGTGCAAAATAAAGAGGAATGTCTTGAAGAAGGAAAAAATGAACAAGGAAAGGGCAAAAAGAAGGTAACTGTTGATAGATCGATGTTTTGAAGCAATAGGATTAGTATGATATCACTGATAGCTTAGGCTCACTGAAAGCACACTATCTGGATTGTTATTGTTTAGTGATATGGTTGCTATCAATGATAGTTTCTATCATTGATTGTATAACTGTTAACAAATTTTATACACCTTACTGATAGCGTATTAATGGATGTATCGTTGTTTTTTATTTCATGATTTCAGGTTGTTGAAAAGACAATTAAAAATAGAGCAAAAGATAGCATAGATGAGCTTGTTGGTGACAAGAGGCCAAAGAGACAAACAAAACCAACCAAAAGTGTTAGAGAATGTAAACAATCTAAAGAAAGACAAAAAAAGGTGTCTCTCAACAAAGCTACAAGACATTCCCCAAGGTGGAATGATATTGCTCCTCCAAGCTTTGATCTCAAAATATTACAAATGTAATAATTAAATGTTTGTTTGACATTGGATATGTTTTCATTAGACATTTGTTTGTACCTTTTTAGGCTTTTGTGGACATTAATTTGTATTGCTTAAGCTTTTCTTTGACATTTGACTTTATGAGATAAGCTTTTGTTTATAACAAACTTTTGTTGATATAGTTGATATGTGAATTTAGTTGAAGTAGTTTTCAAATGAAATTGATATCATTGCAACTTTACTTGAAATAAATTCTTGATTTCAAGTGGTATTAGTCAAATTTCCATAACATATTGATGAAAAACATTGGCAAATTGGCATTATATCAGTGATGGTAGTCATCACTGATGGCATGATATCAATGATGAAAGGCATGATACCAGTGATGGAAGTCATCACTGATAACATGATATCAGTGACAGAAGTTATTCCTGATTACATGTTAACAGAGATAGAGAAATATCACCAGCTTTTCTGTAAAGCTATAAAAATTCAAACATCATATTGGGCTAAAGAATATAGATATATAACATCAAATTTTGTTTCACCAACTATTAATAACTTCACAAACAGTAGTTACAAGGCAATATCTCACTAACTATCATTGACAACAAACATTAGTTACAAAACAAGTTTTTATACATCATTCCACCGGTGCAAATTTACATGTTCTACAATTATGGCCACGCTGATGACATCGGCTGCACTTATTCAAGTTCTTTTTCTTTTCACCAATTGACAACATTCTTTGTTTTCGTGGTCGTCCAACTTGGCGTTTAACTATTAGTGGTTAATAATAGTATACTAGAAAAATAATAGTTTGACACAAAAGCATAAATATCTAAATTTAGCCCATGAAGAACAACACAAACATGAGCACACGGAATCTCTTCTAAATCCCAAACACGACAATTGCATGATCTAGACACCAAGTTTACCACAAATTGATTGTCTCCATCAACTACTTTATATTCTTTATTGTTAATCGGATCAACCTGAAAAACAAAATATAATCAACCACATGATCAATAATTATCACTATAAACTAATATCTAATTTTGTACCTTGAAGGTTCGTGATTGATTGTGCAGCTTCCACAACTCAGACTCTGCCCAACTAGTTAAAATTGTCTTCATAGATAATGTTGATTGACCTTTTTCATAGAACCATTGTTGAAGTGTTTCTCTAATGGAATCAAGTAATGTTGCAACAGGAAACTCTCTAGGCTCTTTCAAAACATTATTCAAGCACTTTGAAACATTTGTAGTCATCATATTATACCTTCTTCTTCTAGAATACACACATGCCCACTTCTCAAAACCAACTTTACTGATATATTCTCGAATAGTAGGATATATTGATTCCATACATTTCATATAAAATTCAAACTTATCAATTGTATAAACTTTTGCACAACTAAAAAATAGTTCATCAATTAAAGAATCCTTATAAATCAACTTCATATTTTGCAAAAGGTGTCGTATACAAACACATTATTCAACAGTTGGAAACACATTTATAACATCTTTCGAAATTCTTAAATGTCGATCAGAAAAAATTATTAATCCCTCTCGTTTGCCAAAACTATTCTTTATATGCTAAAAAACCATCTCCACGATGCATCATTTTCAGAATCAACAATACTAAAAGCAAGAGGCAAAATCTGATTGTTACCATCAATTGTTGTAGCTGTCAAAAGAGTCCCAACATATTTGCATTTTACGAATGTGTCATCAACAGATATATTGGACCTACAATACTTCCAAGCCTCAATTGATGCTCCCATAGCCATATAACAATACTTAAAATGTCCATCTATGTTTGCTTCATAGGTAGTGAATACACCTAAAATAAGATAATCATGAAAATAGAGCAAGGTTTATAATTGGATGAAGTCTATCAGTGATATCACTGTTACTGTGATACCTTCCATCATTCTTAGTGATAATTGATGGAAGTTATCAGTGATGGAAGGTATCAATTATGGAAGCTATCAGTGATGGAAGCAGTTAGTGATAGATGATATCACTGATAAACTATGCAGTCTTGTTTACTCTAAAAAATAAACCTGGATTCATTTCTTCTAACTTCATAAAAAATGTTGGAATCAAAGTGTATGATTCTCGTGCATCACCTTTCAAAGACTTTATTATTTGCTCTTTTGCCCTCCATGCTTTATAATAGCTAACATTTACTCCAAATTCCTTACGAACTTTATGTATAATATCACTAGGAGTTGAGGTATGAGAAGAACTAAATCTAAAATCATCCTTTAAACATTCAACTATTAAAGATGATGTAGCTTGCTTATGCGAAGACTGAATACTTTTTATAGAACAATCATGAATATCAATAAACTTCCTAAGCATCCACAAAACACTGTGCTTGTAACAGGATTCCTTCACGTACCATTGACAACCATCTTGAACACATTGAAATACAATTGATCTTGAATTTGATCTTACAGTCTTAAATTCAAAATTCTTCTTGACTGCTATAAAGTTAAAACAGTTTGATAAAATCTCTTTACTGACAAACAAATCATTCTCTTTCAAGTCACGATCAATATGTATATCCATAATCACTTAAAAATTTTCATCACCAATCAATGGTGTAGAAGAAAGAACAACAGACAAAAAGTTCTCTGCTCCACTAGAAACAACACTAGAAGACACTCCCAAACATGAACTAGTGACATAAGCAATCAAAGGATGTCTTGTATTGTGTTCCTTAACTAATGCCAAAAACCAAGCTACATCCTTATCTTCATGAATTTCAACAATACTTTGATCTTCATTCATACAAAATCTAATAAAGTTGATAGTTCTATAGAAGAAGTAGATGTATTCAAACAAATCTCCTTCACTATTAACTCCATAAAATCTTCAAAAACCATTACATCATCTACTAAAACTCCAGTAGTCTTGTAATTCACATAACAATATTTTTCATTCCATATTCCACTATGAAAAACAACTATTGGAATAACCATATTTTAAAATTCCTGTGAAAGTAAAATAAAAACTCATGAATAACAATTTAACAATGAAATCAACTCTCATGAGTTACAATTATACATTCTAATATCTAACAGTGATAGTCACCATCAGTGATAGCCAATATAGATAGTCAATACATGGCTATCACTGATATGTTCCATCAGTGATAGCAGGTTCTAAACCCTAAGTTTAATAAAGTGAAATTCCAGAATGTCAAACTATGTTTCTATAATTTGGGACCAAAAAGGCTTTTCTTAACTAATCGATCAAACCTCAAACTAACAACAAAAAGAGAGAATAGCAATGAAGAACGCTTGTAACGACCGCAAATTCAAGCTTCCTTAAGGTAATTATTCTCTTTAATTTTGGTCAATTAAAAGAAAATGAATTGGGTTTATTAAGGTCACTTTTGAAATTTTGGGATTTTTGGAGTTAAAGTTTGCAAAATGACTTTTAATTGGACATAAGGGCATTTTGGTCATTTTCAGATTTATAAACCCTTCCTTAAACCCTCAAACTTTTCTTTTTCTCTTTTCAGTTCCTCATTTTCATTCTTGCTCTCAGCCGCCGAGCAGTACTTCTTCTCCCCAGTTCCTTGCGCTGTGCGTTTTCTTCGACGTTCGTTAACTCTCCGGCCATCTTTTCGCCGGAAAGCTTTGGCATCTTGA

mRNA sequence

ATGTACACTGAATGTGTAATTCCTAAGGACAATGAGGACAAGGAAGATGATGTGCAAAATAAAGAGGAATGTCTTGAAGAAGGAAAAAATGAACAAGGAAAGGGCAAAAAGAAGGTTGTTGAAAAGACAATTAAAAATAGAGCAAAAGATAGCATAGATGAGCTTGTTGGTGACAAGAGGCCAAAGAGACAAACAAAACCAACCAAAAGTGTTAGAGAATGTAAACAATCTAAAGAAAGACAAAAAAAGGTGTCTCTCAACAAAGCTACAAGACATTCCCCAAGGTGGAATGATATTGCTCCTCCAAGCTTTGATCTCAAAATATTACAAATTTCCTCATTTTCATTCTTGCTCTCAGCCGCCGAGCAGTACTTCTTCTCCCCAGTTCCTTGCGCTGTGCGTTTTCTTCGACGTTCGTTAACTCTCCGGCCATCTTTTCGCCGGAAAGCTTTGGCATCTTGA

Coding sequence (CDS)

ATGTACACTGAATGTGTAATTCCTAAGGACAATGAGGACAAGGAAGATGATGTGCAAAATAAAGAGGAATGTCTTGAAGAAGGAAAAAATGAACAAGGAAAGGGCAAAAAGAAGGTTGTTGAAAAGACAATTAAAAATAGAGCAAAAGATAGCATAGATGAGCTTGTTGGTGACAAGAGGCCAAAGAGACAAACAAAACCAACCAAAAGTGTTAGAGAATGTAAACAATCTAAAGAAAGACAAAAAAAGGTGTCTCTCAACAAAGCTACAAGACATTCCCCAAGGTGGAATGATATTGCTCCTCCAAGCTTTGATCTCAAAATATTACAAATTTCCTCATTTTCATTCTTGCTCTCAGCCGCCGAGCAGTACTTCTTCTCCCCAGTTCCTTGCGCTGTGCGTTTTCTTCGACGTTCGTTAACTCTCCGGCCATCTTTTCGCCGGAAAGCTTTGGCATCTTGA

Protein sequence

MYTECVIPKDNEDKEDDVQNKEECLEEGKNEQGKGKKKVVEKTIKNRAKDSIDELVGDKRPKRQTKPTKSVRECKQSKERQKKVSLNKATRHSPRWNDIAPPSFDLKILQISSFSFLLSAAEQYFFSPVPCAVRFLRRSLTLRPSFRRKALAS

Homology

[Close]

BLAST of PI0028909 vs. NCBI nr
Match: XP_038885971.1 (chromatin modification-related protein EAF7-like [Benincasa hispida])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-08
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 12  EDKEDDVQNKEECLEEGKNEQGKGKKKVVEKTIKN-----RAKDSIDELVGDKRPKRQTK 71
           E  +DD +++EE  EE K+++   K  V+EKT+K      R K  I+ +  +KRPKRQTK
Sbjct: 143 EQLQDDPEDEEEDQEE-KDKEDMTKMNVIEKTLKKSPKKYRPKVVIENMDDNKRPKRQTK 202

Query: 72  PTKSVRE--CKQSKERQK-------KVSLNKATRHSPRWNDIAPPSFDLKILQI 112
           PTK + E   KQ K+++K       KVS +KATRHSPRWND   PSFDLKI Q+
Sbjct: 203 PTKKILENAKKQKKDKKKVSPNVSTKVSSSKATRHSPRWND-DTPSFDLKISQL 254

[Close]

BLAST of PI0028909 vs. NCBI nr
Match: XP_038891747.1 (pescadillo homolog [Benincasa hispida])

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-08
Identity = 55/114 (48.25%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 12  EDKEDDVQNKEECLEEGKNEQGKGKKKVVEKTIKN-----RAKDSIDELVGDKRPKRQTK 71
           E   DD +++EE  EE K+++   KK V+EKT+K      R K  I+ +  +KRPKRQ K
Sbjct: 192 EQLHDDPEDEEEDQEE-KDKEDMTKKNVIEKTLKKSLKKYRPKVVIENIKDNKRPKRQAK 251

Query: 72  PTKSVRE--CKQSKERQK-------KVSLNKATRHSPRWNDIAPPSFDLKILQI 112
           PTK + E   KQ K+++K       KVS +KATR SPRWND A PSFDLKI Q+
Sbjct: 252 PTKKILENAKKQKKDKKKVSPNVSTKVSPSKATRQSPRWNDDA-PSFDLKISQL 303

[Close]

BLAST of PI0028909 vs. NCBI nr
Match: XP_038880505.1 (glutamic acid-rich protein-like [Benincasa hispida])

HSP 1 Score: 65.1 bits (157), Expect = 6.1e-07
Identity = 54/114 (47.37%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 12  EDKEDDVQNKEECLEEGKNEQGKGKKKVVEKTIKN-----RAKDSIDELVGDKRPKRQTK 71
           E   DD +++EE  EE K+++   KK V+EKT+K      R K  I  +  +KRPKRQ K
Sbjct: 181 EQLHDDPEDEEEDQEE-KDKEDMRKKNVIEKTLKKSPKKYRPKVVIGNIEDNKRPKRQAK 240

Query: 72  PTKSVRE-CKQSKERQKKVSLN--------KATRHSPRWNDIAPPSFDLKILQI 112
           PTK + E  K+ K+ +KKVS N        KATR SP WND A PSFDLKI Q+
Sbjct: 241 PTKKILENAKKQKKDKKKVSTNVSTKVSPSKATRQSPSWNDNA-PSFDLKISQL 292

[Close]

BLAST of PI0028909 vs. NCBI nr
Match: XP_038875107.1 (nucleophosmin-like [Benincasa hispida])

HSP 1 Score: 62.0 bits (149), Expect = 5.1e-06
Identity = 58/132 (43.94%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 1   MYTECVIPKDNE---DKEDDVQ-------NKEECLEEGKNEQGKGKKKVVEKTIKN---- 60
           M+ E    KD E   D+E+D Q         EE  +E K ++   KKKV+EKT+KN    
Sbjct: 62  MHAEIDTAKDEEAQDDQENDQQVQLYDDPEDEEEDQEEKYKEDMAKKKVIEKTLKNSPNK 121

Query: 61  -RAKDSIDELVGDKRPKRQTKPTKSVRE--CKQSKERQK-------KVSLNKATRHSPRW 109
            R K   + +  +KRPKRQ KPT  + E   KQ K+++K       KVS +KA R SPRW
Sbjct: 122 YRPKVVNENIEDNKRPKRQAKPTNKILENAKKQKKDKKKVSPNVSTKVSPSKAIRQSPRW 181

The following BLAST results are available for this feature:

BLAST of PI0028909 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028909 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028909 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885971.1	1.9e-08	48.25	chromatin modification-related protein EAF7-like [Benincasa hispida]	[more]
XP_038891747.1	7.2e-08	48.25	pescadillo homolog [Benincasa hispida]	[more]
XP_038880505.1	6.1e-07	47.37	glutamic acid-rich protein-like [Benincasa hispida]	[more]
XP_038875107.1	5.1e-06	43.94	nucleophosmin-like [Benincasa hispida]	[more]

BLAST of PI0028909 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 148..153
None	No IPR available	COILS	Coil	Coil	coord: 11..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028909.1	PI0028909.1	mRNA