PI0028900 (gene) Melon (PI 482460) v1

Overview
NamePI0028900
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr05: 9282108 .. 9282737 (+)
RNA-Seq ExpressionPI0028900
SyntenyPI0028900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGGGCCATCCTATAGTGGGTTTGGATGGAATGAAGAATATCAATGCATCATCGTAGAACGGGAGTTGTTTGATAGTTGGGTCAAGGTACAATTTTCATAATGTGAATTTGATATACTTTCGAAATCACAACCATTAACTAATCTGTCTGTTTCATGTTTGTATAGAGTCATCTTGAGGCCAAAGGACTTTTACACAAATCATTTCCATATTATGACGATCTGTCGTATGTGTTCGACAGAGATCGGGCAACAGGAGCATATGCAGAGACCTTTACTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACGGTGTTCCACTTGATGATCTACATGATGAAGACATCCCGGATGTATAGCCAATGAGTGGATATGTCCCCAGATGACATGTTAGGAAAACGTGCAGGTCGATCAAGTGAAGGATGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACATAATGAAATAGTGGAGGTGATCAAGTATGCAATGGACTTTGCAAATGATCAATTTAAGGTAATTGCCGATTGACCAAAAGAGAAGCGTGCAACAAAGGTCGAATTGCGTGCTGAAGTCGTGAAACAACTGCAAGGTATCCCAGAACTACGGAGCTGA

mRNA sequence

ATGAGGGGGCCATCCTATAGTGGGTTTGGATGGAATGAAGAATATCAATGCATCATCGTAGAACGGGAGTTGTTTGATAGTTGGGTCAAGGACTTTTACACAAATCATTTCCATATTATGACGATCTGTCGTATGTGTTCGACAGAGATCGGGCAACAGGAGCATATGCAGAGACCTTTACTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACGGTCGATCAAGTGAAGGATGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGAAGCGTGCAACAAAGGTCGAATTGCGTGCTGAAGTCGTGAAACAACTGCAAGGTATCCCAGAACTACGGAGCTGA

Coding sequence (CDS)

ATGAGGGGGCCATCCTATAGTGGGTTTGGATGGAATGAAGAATATCAATGCATCATCGTAGAACGGGAGTTGTTTGATAGTTGGGTCAAGGACTTTTACACAAATCATTTCCATATTATGACGATCTGTCGTATGTGTTCGACAGAGATCGGGCAACAGGAGCATATGCAGAGACCTTTACTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACGGTCGATCAAGTGAAGGATGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGAAGCGTGCAACAAAGGTCGAATTGCGTGCTGAAGTCGTGAAACAACTGCAAGGTATCCCAGAACTACGGAGCTGA

Protein sequence

MRGPSYSGFGWNEEYQCIIVERELFDSWVKDFYTNHFHIMTICRMCSTEIGQQEHMQRPLLTWDLMCQTVLMTVDQVKDEIVQVGVRGNGKRATKVELRAEVVKQLQGIPELRS
Homology
BLAST of PI0028900 vs. ExPASy TrEMBL
Match: A0A0A0M343 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G651700 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.3e-27
Identity = 75/126 (59.52%), Postives = 84/126 (66.67%), Query Frame = 0

Query: 1   MRGPSYSGFGWNEEYQCIIVERELFDSWVKDFYTNHFHIMTICRMCSTEIGQQEHMQRPL 60
           MRGPS S FGWNEEYQCI+ E+ELFDSWVKD             M S +IG QEH QR L
Sbjct: 1   MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDL-----------MSSIKIGIQEHAQRSL 60

Query: 61  LTWDLMCQTVLMT----VDQVKDEIVQVGVRGN--------GKRATKVELRAEVVKQLQG 115
           L W  MCQT+LMT    VDQVK+EIV V V+GN         +RATKVEL  EVVKQLQ 
Sbjct: 61  LMWVKMCQTILMTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELCVEVVKQLQD 115

BLAST of PI0028900 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 50/159 (31.45%), Postives = 71/159 (44.65%), Query Frame = 0

Query: 1   MRGPSYSGFGWNEEYQCIIVERELFDSWVKD-------------FYTNHFHIMTICRMCS 60
           MRGPS SGFGWNEE+QCII ER+LFDSWVK              +Y +  ++    R   
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  --------------------------------TEIGQQEHMQRPLLTWDLMCQTVLMTVD 115
                                           T   Q  H+  P   + +  + +   ++
Sbjct: 426 ARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHIS-PDEMFGIRAEVIRSVME 485

BLAST of PI0028900 vs. ExPASy TrEMBL
Match: A0A5A7UCJ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00900 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.2e-09
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 1   MRGPSYSGFGWNEEYQCIIVERELFDSWVKDF-----YTNHFHIMTICRMCSTEIGQQEH 60
           M GP+ SGFGWN+E +CII E+ELF++WV+ +       N+F I T   MCS  IGQQ  
Sbjct: 330 MWGPACSGFGWNDEEKCIIAEKELFENWVRSYPAVKGLLNYFCITTNLHMCSVPIGQQVD 389

Query: 61  MQRPLLTWDL 66
             R   TW L
Sbjct: 390 SLRYSSTWGL 399

BLAST of PI0028900 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.9e-07
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 1   MRGPSYSGFGWNEEYQCIIVERELFDSWVK 31
           MRGPS SGFGWNEE+QCII ER+LFDSW+K
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

BLAST of PI0028900 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.9e-07
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 1   MRGPSYSGFGWNEEYQCIIVERELFDSWVK 31
           MRGPS SGFGWNEE+QCII ER+LFDSW+K
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

BLAST of PI0028900 vs. NCBI nr
Match: KGN66636.1 (hypothetical protein Csa_007482 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 8.8e-27
Identity = 75/126 (59.52%), Postives = 84/126 (66.67%), Query Frame = 0

Query: 1   MRGPSYSGFGWNEEYQCIIVERELFDSWVKDFYTNHFHIMTICRMCSTEIGQQEHMQRPL 60
           MRGPS S FGWNEEYQCI+ E+ELFDSWVKD             M S +IG QEH QR L
Sbjct: 1   MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDL-----------MSSIKIGIQEHAQRSL 60

Query: 61  LTWDLMCQTVLMT----VDQVKDEIVQVGVRGN--------GKRATKVELRAEVVKQLQG 115
           L W  MCQT+LMT    VDQVK+EIV V V+GN         +RATKVEL  EVVKQLQ 
Sbjct: 61  LMWVKMCQTILMTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELCVEVVKQLQD 115

BLAST of PI0028900 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-09
Identity = 50/159 (31.45%), Postives = 71/159 (44.65%), Query Frame = 0

Query: 1   MRGPSYSGFGWNEEYQCIIVERELFDSWVKD-------------FYTNHFHIMTICRMCS 60
           MRGPS SGFGWNEE+QCII ER+LFDSWVK              +Y +  ++    R   
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  --------------------------------TEIGQQEHMQRPLLTWDLMCQTVLMTVD 115
                                           T   Q  H+  P   + +  + +   ++
Sbjct: 426 ARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHIS-PDEMFGIRAEVIRSVME 485

BLAST of PI0028900 vs. NCBI nr
Match: KAA0051365.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 1   MRGPSYSGFGWNEEYQCIIVERELFDSWVKDF-----YTNHFHIMTICRMCSTEIGQQEH 60
           M GP+ SGFGWN+E +CII E+ELF++WV+ +       N+F I T   MCS  IGQQ  
Sbjct: 330 MWGPACSGFGWNDEEKCIIAEKELFENWVRSYPAVKGLLNYFCITTNLHMCSVPIGQQVD 389

Query: 61  MQRPLLTWDL 66
             R   TW L
Sbjct: 390 SLRYSSTWGL 399

BLAST of PI0028900 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-06
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 1   MRGPSYSGFGWNEEYQCIIVERELFDSWVK 31
           MRGPS SGFGWNEE+QCII ER+LFDSW+K
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

BLAST of PI0028900 vs. NCBI nr
Match: TYK05827.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-06
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0

Query: 1   MRGPSYSGFGWNEEYQCIIVERELFDSWVKDF------YTNHFHIMTICRMCSTEIGQQE 60
           MRG + SGFGWN++ +CIIVE+EL DSWV+         TN F I T   +CS  I ++ 
Sbjct: 53  MRGTTCSGFGWNDDTKCIIVEKELLDSWVRSHLQRRGSLTNCFPITTNLHICSAAIERRV 112

Query: 61  HMQRPLLTWDL 66
              R   TW L
Sbjct: 113 ASLRRSRTWGL 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M3434.3e-2759.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G651700 PE=4 SV=1[more]
A0A5D3DG221.4e-0931.45Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UCJ15.2e-0948.57Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U0H74.9e-0783.33Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L34.9e-0783.33uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
Match NameE-valueIdentityDescription
KGN66636.18.8e-2759.52hypothetical protein Csa_007482 [Cucumis sativus][more]
KAA0062747.12.8e-0931.45retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... [more]
KAA0051365.11.1e-0848.57retrotransposon protein [Cucumis melo var. makuwa][more]
XP_008441954.11.0e-0683.33PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
TYK05827.12.9e-0645.07retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028900.1PI0028900.1mRNA