PI0028889 (gene) Melon (PI 482460) v1

Overview


Name	PI0028889
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr08: 7003448 .. 7003633 (-)
RNA-Seq Expression	PI0028889
Synteny	PI0028889

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTTCCTCCCGGGCCCCCAAACACATTTGGACGAAGGAGGAAGAGTTATACCTGGTCGAGGCCTTGGTGGAGTTGGTATCTGCCGGTGGCTGGAAGTTAGATAACGGTACCTTCCGTCTTGGGTACCTGGATCAGCTACAAAAAATGATGGCAGAGAAGATGCCTGGATGTAACATCTAG

mRNA sequence

ATGGCAAGTTCCTCCCGGGCCCCCAAACACATTTGGACGAAGGAGGAAGAGTTATACCTGGTCGAGGCCTTGGTGGAGTTGGTATCTGCCGGTGGCTGGAAGTTAGATAACGGTACCTTCCGTCTTGGGTACCTGGATCAGCTACAAAAAATGATGGCAGAGAAGATGCCTGGATGTAACATCTAG

Coding sequence (CDS)

ATGGCAAGTTCCTCCCGGGCCCCCAAACACATTTGGACGAAGGAGGAAGAGTTATACCTGGTCGAGGCCTTGGTGGAGTTGGTATCTGCCGGTGGCTGGAAGTTAGATAACGGTACCTTCCGTCTTGGGTACCTGGATCAGCTACAAAAAATGATGGCAGAGAAGATGCCTGGATGTAACATCTAG

Protein sequence

MASSSRAPKHIWTKEEELYLVEALVELVSAGGWKLDNGTFRLGYLDQLQKMMAEKMPGCNI

Homology

[Close]

BLAST of PI0028889 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.6e-19
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MASSSRAPKHIWTKEEELYLVEALVELVSAGGWKLDNGTFRLGYLDQLQKMMAEKMPGCN 60
          MASSSR PKH WTKEEE  LVE LVELV+AGGW+ DNGTFR GYL+QL +MMA K+PGCN
Sbjct: 1  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

[Close]

BLAST of PI0028889 vs. ExPASy TrEMBL
Match: A0A5A7U098 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00330 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.6e-19
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MASSSRAPKHIWTKEEELYLVEALVELVSAGGWKLDNGTFRLGYLDQLQKMMAEKMPGCN 60
          MASSSR PKH WTKEEE  LVE LVELV+AGGW+ DNGTFR GYL+QL +MMA K+PGCN
Sbjct: 1  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

[Close]

BLAST of PI0028889 vs. ExPASy TrEMBL
Match: A0A5D3CQS4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00390 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.7e-19
Identity = 48/61 (78.69%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MASSSRAPKHIWTKEEELYLVEALVELVSAGGWKLDNGTFRLGYLDQLQKMMAEKMPGCN 60
          MASSSRAPKH WTKEEE  LVE LVELVSAGGW+ +NGTFR GYL QLQ+MMAEK+P  N
Sbjct: 1  MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

[Close]

BLAST of PI0028889 vs. ExPASy TrEMBL
Match: A0A5A7U216 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001370 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-18
Identity = 46/61 (75.41%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MASSSRAPKHIWTKEEELYLVEALVELVSAGGWKLDNGTFRLGYLDQLQKMMAEKMPGCN 60
          M SSSR PKH WTKEEE+ LVE LVELV+AGGW+ DNGTFR GYL+QL +MMA K+PGCN
Sbjct: 1  MTSSSRLPKHTWTKEEEVGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

[Close]

BLAST of PI0028889 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MASSSRAPKHIWTKEEELYLVEALVELVSAGGWKLDNGTFRLGYLDQLQKMMAEKMPGCN 60
          MASSSRA KH WTKEEE  LVE LVELVSAGGW+ DNGTFR GYL QLQ+MMAEK+P  N
Sbjct: 1  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

[Close]

BLAST of PI0028889 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MASSSRAPKHIWTKEEELYLVEALVELVSAGGWKLDNGTFRLGYLDQLQKMMAEKMPGCN 60
          MASSSR PKH WTKEEE  LVE LVELV+AGGW+ DNGTFR GYL+QL +MMA K+PGCN
Sbjct: 1  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

[Close]

BLAST of PI0028889 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MASSSRAPKHIWTKEEELYLVEALVELVSAGGWKLDNGTFRLGYLDQLQKMMAEKMPGCN 60
          MASSSR PKH WTKEEE  LVE LVELV+AGGW+ DNGTFR GYL+QL +MMA K+PGCN
Sbjct: 1  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

[Close]

BLAST of PI0028889 vs. NCBI nr
Match: KAA0066605.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 1.8e-18
Identity = 48/61 (78.69%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MASSSRAPKHIWTKEEELYLVEALVELVSAGGWKLDNGTFRLGYLDQLQKMMAEKMPGCN 60
          MASSSRAPKH WTKEEE  LVE LVELVSAGGW+ +NGTFR GYL QLQ+MMAEK+P  N
Sbjct: 1  MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

[Close]

BLAST of PI0028889 vs. NCBI nr
Match: XP_031739738.1 (uncharacterized protein LOC116403265 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 1.8e-18
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MASSSRAPKHIWTKEEELYLVEALVELVSAGGWKLDNGTFRLGYLDQLQKMMAEKMPGCN 60
          M SSSRAPKH+WTKEEE  LVE +VELVSAGGWK +NGTFR GYL QL ++MA K+PGCN
Sbjct: 1  MTSSSRAPKHVWTKEEEATLVECMVELVSAGGWKSNNGTFRPGYLAQLLRIMAAKLPGCN 60

Query: 61 I 62
          +
Sbjct: 61 V 61

[Close]

BLAST of PI0028889 vs. NCBI nr
Match: KAA0047509.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 2.3e-18
Identity = 46/61 (75.41%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MASSSRAPKHIWTKEEELYLVEALVELVSAGGWKLDNGTFRLGYLDQLQKMMAEKMPGCN 60
          M SSSR PKH WTKEEE+ LVE LVELV+AGGW+ DNGTFR GYL+QL +MMA K+PGCN
Sbjct: 1  MTSSSRLPKHTWTKEEEVGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

The following BLAST results are available for this feature:

BLAST of PI0028889 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1M0	6.6e-19	77.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U098	6.6e-19	77.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CQS4	8.7e-19	78.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U216	1.1e-18	75.41	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BZU3	1.5e-18	78.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0028889 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047075.1	1.4e-18	77.05	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05082.1	1.4e-18	77.05	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066605.1	1.8e-18	78.69	retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon p...	[more]
XP_031739738.1	1.8e-18	73.77	uncharacterized protein LOC116403265 [Cucumis sativus]	[more]
KAA0047509.1	2.3e-18	75.41	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0028889 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 3..60
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 3..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028889.1	PI0028889.1	mRNA