PI0028874 (gene) Melon (PI 482460) v1

Overview
NamePI0028874
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr10: 20923230 .. 20923429 (-)
RNA-Seq ExpressionPI0028874
SyntenyPI0028874
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGAAACAATCAAAGGGGTCGTGGATCTTTAAGCAAAGAACAGATAGCGATAAGCAATAAAGACATAGCTGAAGACAAAGTAGATGAGGAGTCGAGCTGTGGTTGAGCAAGTCGATTGTTGAAGGTAGAGGAAGAAAGAGAATCGGTGAGGCTTATGGGTGGGCTTTGTCTGCTAAGTACGAAGACTTGTCATAG

mRNA sequence

ATGTGGGGAAACAATCAAAGGGGTCGTGGATCTTTAAGCAAAGAACAGATAGCGATAAGCAATAAAGACATAGCTGAAGACAAATCGATTGTTGAAGGTAGAGGAAGAAAGAGAATCGGTGAGGCTTATGGGTGGGCTTTGTCTGCTAAGTACGAAGACTTGTCATAG

Coding sequence (CDS)

ATGTGGGGAAACAATCAAAGGGGTCGTGGATCTTTAAGCAAAGAACAGATAGCGATAAGCAATAAAGACATAGCTGAAGACAAATCGATTGTTGAAGGTAGAGGAAGAAAGAGAATCGGTGAGGCTTATGGGTGGGCTTTGTCTGCTAAGTACGAAGACTTGTCATAG

Protein sequence

MWGNNQRGRGSLSKEQIAISNKDIAEDKSIVEGRGRKRIGEAYGWALSAKYEDLS
Homology
[Close]
BLAST of PI0028874 vs. ExPASy TrEMBL
Match: A0A0A0KUP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612920 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.0e-19
Identity = 53/62 (85.48%), Postives = 53/62 (85.48%), Query Frame = 0 

Query: 1  MWGNNQRGRGSLSKEQIAISNKDIAED-------KSIVEGRGRKRIGEAYGWALSAKYED 56
          MWGNNQRGRGSLSKEQ AISNKDIAED       KSIVEGRGRKRIGEAYGW LSAKYED
Sbjct: 1  MWGNNQRGRGSLSKEQKAISNKDIAEDKVELWLSKSIVEGRGRKRIGEAYGWVLSAKYED 60

[Close]
BLAST of PI0028874 vs. NCBI nr
Match: KAE8648809.1 (hypothetical protein Csa_009267, partial [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 8.3e-15
Identity = 47/56 (83.93%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 1  MWGNNQRGRGSLSKEQIAISNKDIAED-------KSIVEGRGRKRIGEAYGWALSA 50
          MWGNNQRGRGSLSKEQ AISNKDIAED       KSIVEGRGRKRIGEAYGW LSA
Sbjct: 1  MWGNNQRGRGSLSKEQKAISNKDIAEDKVELWLSKSIVEGRGRKRIGEAYGWVLSA 56

The following BLAST results are available for this feature:
BLAST of PI0028874 vs.
Match NameE-valueIdentityDescription
BLAST of PI0028874 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUP86.0e-1985.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612920 PE=4 SV=1[more]
BLAST of PI0028874 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648809.18.3e-1583.93hypothetical protein Csa_009267, partial [Cucumis sativus][more]
BLAST of PI0028874 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028874.1PI0028874.1mRNA