PI0028781 (gene) Melon (PI 482460) v1

Overview
NamePI0028781
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr01: 13161268 .. 13161807 (+)
RNA-Seq ExpressionPI0028781
SyntenyPI0028781
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGTACATTTTGTTTGATCTTCAAGTTGAACTAGATCTCGATGATGTGGCACAAAAAAATCATGTTGCAGTAATGATTCATCCAGAGGGTCGATCACTTGCTACAGGGAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTTACCGGAGGTCTTACAAAATAATGACATCCGAACTTTTTACTCAAAAGAAGAAGAAAAGAATGTGGAGGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCATAAACAAAACTTTTCTAAAAAAGAATCCCATTTGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAAGCAAGGAAGAATGCAAGGAAGTTTCAACCAATCACTGAAGAAGGTGAGGAGCTTCCTCGACCACGACAACCAATAACTTTGAAAGACTTCTTCCCTGAAAACTTTCCATTGGAAATCGTTTCGTGCCATGCTGTCAGTACAACTGAGGATGACACTTCTCCCTCAGATTCCGCAGAGCAACAACCAAGCTAG

mRNA sequence

ATGGTGGTGTACATTTTGTTTGATCTTCAAGTTGAACTAGATCTCGATGATGTGGCACAAAAAAATCATGTTGCAGTAATGATTCATCCAGAGGGTCGATCACTTGCTACAGGGAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTTACCGGAGGTCTTACAAAATAATGACATCCGAACTTTTTACTCAAAAGAAGAAGAAAAGAATGTGGAGGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCATAAACAAAACTTTTCTAAAAAAGAATCCCATTTGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAAGCAAGGAAGAATGCAAGGAAGTTTCAACCAATCACTGAAGAAGGTGAGGAGCTTCCTCGACCACGACAACCAATAACTTTGAAAGACTTCTTCCCTGAAAACTTTCCATTGGAAATCGTTTCGTGCCATGCTGTCAGTACAACTGAGGATGACACTTCTCCCTCAGATTCCGCAGAGCAACAACCAAGCTAG

Coding sequence (CDS)

ATGGTGGTGTACATTTTGTTTGATCTTCAAGTTGAACTAGATCTCGATGATGTGGCACAAAAAAATCATGTTGCAGTAATGATTCATCCAGAGGGTCGATCACTTGCTACAGGGAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTTACCGGAGGTCTTACAAAATAATGACATCCGAACTTTTTACTCAAAAGAAGAAGAAAAGAATGTGGAGGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCATAAACAAAACTTTTCTAAAAAAGAATCCCATTTGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAAGCAAGGAAGAATGCAAGGAAGTTTCAACCAATCACTGAAGAAGGTGAGGAGCTTCCTCGACCACGACAACCAATAACTTTGAAAGACTTCTTCCCTGAAAACTTTCCATTGGAAATCGTTTCGTGCCATGCTGTCAGTACAACTGAGGATGACACTTCTCCCTCAGATTCCGCAGAGCAACAACCAAGCTAG

Protein sequence

MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQPS
Homology
BLAST of PI0028781 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 8.4e-54
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0

Query: 1   MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
           +++ +  D ++EL+LDDVAQ NH AV+I  + R  A GSLIQFGSLEPVVIYS PE LQN
Sbjct: 495 LILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQN 554

Query: 61  NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
           ND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN
Sbjct: 555 NDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKN 614

Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
            RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH  STTE+D  PS++ E+ P
Sbjct: 615 PRKFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDACPSNAMEETP 672

BLAST of PI0028781 vs. ExPASy TrEMBL
Match: A0A5D3BIH8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001270 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 8.4e-54
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0

Query: 1   MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
           +++ +  D ++EL+LDDVAQ NH AV+I  + R  A GSLIQFGSLEPVVIYS PE LQN
Sbjct: 473 LILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQN 532

Query: 61  NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
           ND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN
Sbjct: 533 NDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKN 592

Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
            RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH  STTE+D  PS++ E+ P
Sbjct: 593 PRKFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDACPSNAMEETP 650

BLAST of PI0028781 vs. ExPASy TrEMBL
Match: A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 8.4e-54
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0

Query: 1   MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
           +++ +  D ++EL+LDDVAQ NH AV+I  + R  A GSLIQFGSLEPVVIYS PE LQN
Sbjct: 425 LILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQN 484

Query: 61  NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
           ND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN
Sbjct: 485 NDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKN 544

Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
            RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH  STTE+D  PS++ E+ P
Sbjct: 545 PRKFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDACPSNAMEETP 602

BLAST of PI0028781 vs. ExPASy TrEMBL
Match: A0A5A7TPD2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00470 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 4.2e-53
Identity = 115/159 (72.33%), Postives = 126/159 (79.25%), Query Frame = 0

Query: 20  QKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDAD 79
           Q NHVAV+I  + R  A GSLIQFGSLEPVVIY  PE LQNND +T  SKEEEK ++DAD
Sbjct: 114 QTNHVAVIIQLDSRLPAIGSLIQFGSLEPVVIYFSPEALQNNDFQTICSKEEEKQIDDAD 173

Query: 80  EGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQ 139
           EGWTLVTRRKK KQNFS+KES  YREY+R GKSQRRKARKN RK  PI EE EELPR RQ
Sbjct: 174 EGWTLVTRRKKRKQNFSQKESRSYREYRRTGKSQRRKARKNLRKLLPIIEESEELPRSRQ 233

Query: 140 PITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
           PITLKDFF ENF +EIV CH + TT+DDT PS+S E  P
Sbjct: 234 PITLKDFFSENFSMEIVPCHTIGTTDDDTFPSNSIEVTP 272

BLAST of PI0028781 vs. ExPASy TrEMBL
Match: A0A5D3BR60 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001390 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.1e-52
Identity = 110/178 (61.80%), Postives = 138/178 (77.53%), Query Frame = 0

Query: 1   MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
           +++ +  D ++EL+LDDVAQ NH  ++I P+ R    GSLIQFGSLEPV+I+S PE LQN
Sbjct: 168 LILKLALDKKIELELDDVAQTNHATIIIQPDSRLPVVGSLIQFGSLEPVIIHSSPEDLQN 227

Query: 61  NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
           ND +T   KEEEK V++ +EGWTLVTRRKK KQ+FS+K+S  YR+Y+ KGKSQRR  RKN
Sbjct: 228 NDFQTDGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKKSGSYRKYRSKGKSQRRNTRKN 287

Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
           +RKF PI EE E L R R+PITLKDFFP+NFP+EIVSCH  STT DD  PS++ E+ P
Sbjct: 288 SRKFLPIIEESEVLSRTRRPITLKDFFPKNFPMEIVSCHTTSTTADDAFPSNAMEETP 345

BLAST of PI0028781 vs. NCBI nr
Match: TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-53
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0

Query: 1   MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
           +++ +  D ++EL+LDDVAQ NH AV+I  + R  A GSLIQFGSLEPVVIYS PE LQN
Sbjct: 473 LILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQN 532

Query: 61  NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
           ND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN
Sbjct: 533 NDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKN 592

Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
            RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH  STTE+D  PS++ E+ P
Sbjct: 593 PRKFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDACPSNAMEETP 650

BLAST of PI0028781 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-53
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0

Query: 1   MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
           +++ +  D ++EL+LDDVAQ NH AV+I  + R  A GSLIQFGSLEPVVIYS PE LQN
Sbjct: 495 LILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQN 554

Query: 61  NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
           ND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN
Sbjct: 555 NDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKN 614

Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
            RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH  STTE+D  PS++ E+ P
Sbjct: 615 PRKFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDACPSNAMEETP 672

BLAST of PI0028781 vs. NCBI nr
Match: TYK18071.1 (uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-53
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0

Query: 1   MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
           +++ +  D ++EL+LDDVAQ NH AV+I  + R  A GSLIQFGSLEPVVIYS PE LQN
Sbjct: 425 LILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQN 484

Query: 61  NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
           ND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN
Sbjct: 485 NDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKN 544

Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
            RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH  STTE+D  PS++ E+ P
Sbjct: 545 PRKFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDACPSNAMEETP 602

BLAST of PI0028781 vs. NCBI nr
Match: KAA0043275.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK29339.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 8.6e-53
Identity = 115/159 (72.33%), Postives = 126/159 (79.25%), Query Frame = 0

Query: 20  QKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDAD 79
           Q NHVAV+I  + R  A GSLIQFGSLEPVVIY  PE LQNND +T  SKEEEK ++DAD
Sbjct: 114 QTNHVAVIIQLDSRLPAIGSLIQFGSLEPVVIYFSPEALQNNDFQTICSKEEEKQIDDAD 173

Query: 80  EGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQ 139
           EGWTLVTRRKK KQNFS+KES  YREY+R GKSQRRKARKN RK  PI EE EELPR RQ
Sbjct: 174 EGWTLVTRRKKRKQNFSQKESRSYREYRRTGKSQRRKARKNLRKLLPIIEESEELPRSRQ 233

Query: 140 PITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
           PITLKDFF ENF +EIV CH + TT+DDT PS+S E  P
Sbjct: 234 PITLKDFFSENFSMEIVPCHTIGTTDDDTFPSNSIEVTP 272

BLAST of PI0028781 vs. NCBI nr
Match: KAA0052314.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK01877.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 4.3e-52
Identity = 110/178 (61.80%), Postives = 138/178 (77.53%), Query Frame = 0

Query: 1   MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
           +++ +  D ++EL+LDDVAQ NH  ++I P+ R    GSLIQFGSLEPV+I+S PE LQN
Sbjct: 168 LILKLALDKKIELELDDVAQTNHATIIIQPDSRLPVVGSLIQFGSLEPVIIHSSPEDLQN 227

Query: 61  NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
           ND +T   KEEEK V++ +EGWTLVTRRKK KQ+FS+K+S  YR+Y+ KGKSQRR  RKN
Sbjct: 228 NDFQTDGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKKSGSYRKYRSKGKSQRRNTRKN 287

Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
           +RKF PI EE E L R R+PITLKDFFP+NFP+EIVSCH  STT DD  PS++ E+ P
Sbjct: 288 SRKFLPIIEESEVLSRTRRPITLKDFFPKNFPMEIVSCHTTSTTADDAFPSNAMEETP 345

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TZU98.4e-5464.61Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940... [more]
A0A5D3BIH88.4e-5464.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D1E58.4e-5464.61Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402... [more]
A0A5A7TPD24.2e-5372.33Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BR602.1e-5261.80Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
TYJ98225.11.7e-5364.61uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa][more]
KAA0047477.11.7e-5364.61uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa][more]
TYK18071.11.7e-5364.61uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa][more]
KAA0043275.18.6e-5372.33ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK29339.1 ty3-gyp... [more]
KAA0052314.14.3e-5261.80ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK01877.1 ty3-gyp... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028781.1PI0028781.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0003676 nucleic acid binding