Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGTACATTTTGTTTGATCTTCAAGTTGAACTAGATCTCGATGATGTGGCACAAAAAAATCATGTTGCAGTAATGATTCATCCAGAGGGTCGATCACTTGCTACAGGGAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTTACCGGAGGTCTTACAAAATAATGACATCCGAACTTTTTACTCAAAAGAAGAAGAAAAGAATGTGGAGGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCATAAACAAAACTTTTCTAAAAAAGAATCCCATTTGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAAGCAAGGAAGAATGCAAGGAAGTTTCAACCAATCACTGAAGAAGGTGAGGAGCTTCCTCGACCACGACAACCAATAACTTTGAAAGACTTCTTCCCTGAAAACTTTCCATTGGAAATCGTTTCGTGCCATGCTGTCAGTACAACTGAGGATGACACTTCTCCCTCAGATTCCGCAGAGCAACAACCAAGCTAG
mRNA sequence
ATGGTGGTGTACATTTTGTTTGATCTTCAAGTTGAACTAGATCTCGATGATGTGGCACAAAAAAATCATGTTGCAGTAATGATTCATCCAGAGGGTCGATCACTTGCTACAGGGAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTTACCGGAGGTCTTACAAAATAATGACATCCGAACTTTTTACTCAAAAGAAGAAGAAAAGAATGTGGAGGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCATAAACAAAACTTTTCTAAAAAAGAATCCCATTTGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAAGCAAGGAAGAATGCAAGGAAGTTTCAACCAATCACTGAAGAAGGTGAGGAGCTTCCTCGACCACGACAACCAATAACTTTGAAAGACTTCTTCCCTGAAAACTTTCCATTGGAAATCGTTTCGTGCCATGCTGTCAGTACAACTGAGGATGACACTTCTCCCTCAGATTCCGCAGAGCAACAACCAAGCTAG
Coding sequence (CDS)
ATGGTGGTGTACATTTTGTTTGATCTTCAAGTTGAACTAGATCTCGATGATGTGGCACAAAAAAATCATGTTGCAGTAATGATTCATCCAGAGGGTCGATCACTTGCTACAGGGAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTTACCGGAGGTCTTACAAAATAATGACATCCGAACTTTTTACTCAAAAGAAGAAGAAAAGAATGTGGAGGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCATAAACAAAACTTTTCTAAAAAAGAATCCCATTTGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAAGCAAGGAAGAATGCAAGGAAGTTTCAACCAATCACTGAAGAAGGTGAGGAGCTTCCTCGACCACGACAACCAATAACTTTGAAAGACTTCTTCCCTGAAAACTTTCCATTGGAAATCGTTTCGTGCCATGCTGTCAGTACAACTGAGGATGACACTTCTCCCTCAGATTCCGCAGAGCAACAACCAAGCTAG
Protein sequence
MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQPS
Homology
BLAST of PI0028781 vs. ExPASy TrEMBL
Match:
A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 8.4e-54
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0
Query: 1 MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
+++ + D ++EL+LDDVAQ NH AV+I + R A GSLIQFGSLEPVVIYS PE LQN
Sbjct: 495 LILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQN 554
Query: 61 NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
ND R KEEEK V++ +EGWTLVTRRKK KQ+FS+KES YR Y+ KGKSQRR RKN
Sbjct: 555 NDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKN 614
Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH STTE+D PS++ E+ P
Sbjct: 615 PRKFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDACPSNAMEETP 672
BLAST of PI0028781 vs. ExPASy TrEMBL
Match:
A0A5D3BIH8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001270 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 8.4e-54
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0
Query: 1 MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
+++ + D ++EL+LDDVAQ NH AV+I + R A GSLIQFGSLEPVVIYS PE LQN
Sbjct: 473 LILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQN 532
Query: 61 NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
ND R KEEEK V++ +EGWTLVTRRKK KQ+FS+KES YR Y+ KGKSQRR RKN
Sbjct: 533 NDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKN 592
Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH STTE+D PS++ E+ P
Sbjct: 593 PRKFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDACPSNAMEETP 650
BLAST of PI0028781 vs. ExPASy TrEMBL
Match:
A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 8.4e-54
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0
Query: 1 MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
+++ + D ++EL+LDDVAQ NH AV+I + R A GSLIQFGSLEPVVIYS PE LQN
Sbjct: 425 LILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQN 484
Query: 61 NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
ND R KEEEK V++ +EGWTLVTRRKK KQ+FS+KES YR Y+ KGKSQRR RKN
Sbjct: 485 NDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKN 544
Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH STTE+D PS++ E+ P
Sbjct: 545 PRKFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDACPSNAMEETP 602
BLAST of PI0028781 vs. ExPASy TrEMBL
Match:
A0A5A7TPD2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00470 PE=4 SV=1)
HSP 1 Score: 217.6 bits (553), Expect = 4.2e-53
Identity = 115/159 (72.33%), Postives = 126/159 (79.25%), Query Frame = 0
Query: 20 QKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDAD 79
Q NHVAV+I + R A GSLIQFGSLEPVVIY PE LQNND +T SKEEEK ++DAD
Sbjct: 114 QTNHVAVIIQLDSRLPAIGSLIQFGSLEPVVIYFSPEALQNNDFQTICSKEEEKQIDDAD 173
Query: 80 EGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQ 139
EGWTLVTRRKK KQNFS+KES YREY+R GKSQRRKARKN RK PI EE EELPR RQ
Sbjct: 174 EGWTLVTRRKKRKQNFSQKESRSYREYRRTGKSQRRKARKNLRKLLPIIEESEELPRSRQ 233
Query: 140 PITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
PITLKDFF ENF +EIV CH + TT+DDT PS+S E P
Sbjct: 234 PITLKDFFSENFSMEIVPCHTIGTTDDDTFPSNSIEVTP 272
BLAST of PI0028781 vs. ExPASy TrEMBL
Match:
A0A5D3BR60 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001390 PE=4 SV=1)
HSP 1 Score: 215.3 bits (547), Expect = 2.1e-52
Identity = 110/178 (61.80%), Postives = 138/178 (77.53%), Query Frame = 0
Query: 1 MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
+++ + D ++EL+LDDVAQ NH ++I P+ R GSLIQFGSLEPV+I+S PE LQN
Sbjct: 168 LILKLALDKKIELELDDVAQTNHATIIIQPDSRLPVVGSLIQFGSLEPVIIHSSPEDLQN 227
Query: 61 NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
ND +T KEEEK V++ +EGWTLVTRRKK KQ+FS+K+S YR+Y+ KGKSQRR RKN
Sbjct: 228 NDFQTDGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKKSGSYRKYRSKGKSQRRNTRKN 287
Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
+RKF PI EE E L R R+PITLKDFFP+NFP+EIVSCH STT DD PS++ E+ P
Sbjct: 288 SRKFLPIIEESEVLSRTRRPITLKDFFPKNFPMEIVSCHTTSTTADDAFPSNAMEETP 345
BLAST of PI0028781 vs. NCBI nr
Match:
TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])
HSP 1 Score: 219.9 bits (559), Expect = 1.7e-53
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0
Query: 1 MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
+++ + D ++EL+LDDVAQ NH AV+I + R A GSLIQFGSLEPVVIYS PE LQN
Sbjct: 473 LILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQN 532
Query: 61 NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
ND R KEEEK V++ +EGWTLVTRRKK KQ+FS+KES YR Y+ KGKSQRR RKN
Sbjct: 533 NDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKN 592
Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH STTE+D PS++ E+ P
Sbjct: 593 PRKFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDACPSNAMEETP 650
BLAST of PI0028781 vs. NCBI nr
Match:
KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])
HSP 1 Score: 219.9 bits (559), Expect = 1.7e-53
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0
Query: 1 MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
+++ + D ++EL+LDDVAQ NH AV+I + R A GSLIQFGSLEPVVIYS PE LQN
Sbjct: 495 LILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQN 554
Query: 61 NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
ND R KEEEK V++ +EGWTLVTRRKK KQ+FS+KES YR Y+ KGKSQRR RKN
Sbjct: 555 NDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKN 614
Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH STTE+D PS++ E+ P
Sbjct: 615 PRKFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDACPSNAMEETP 672
BLAST of PI0028781 vs. NCBI nr
Match:
TYK18071.1 (uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa])
HSP 1 Score: 219.9 bits (559), Expect = 1.7e-53
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0
Query: 1 MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
+++ + D ++EL+LDDVAQ NH AV+I + R A GSLIQFGSLEPVVIYS PE LQN
Sbjct: 425 LILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQN 484
Query: 61 NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
ND R KEEEK V++ +EGWTLVTRRKK KQ+FS+KES YR Y+ KGKSQRR RKN
Sbjct: 485 NDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKN 544
Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH STTE+D PS++ E+ P
Sbjct: 545 PRKFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDACPSNAMEETP 602
BLAST of PI0028781 vs. NCBI nr
Match:
KAA0043275.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK29339.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 217.6 bits (553), Expect = 8.6e-53
Identity = 115/159 (72.33%), Postives = 126/159 (79.25%), Query Frame = 0
Query: 20 QKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDAD 79
Q NHVAV+I + R A GSLIQFGSLEPVVIY PE LQNND +T SKEEEK ++DAD
Sbjct: 114 QTNHVAVIIQLDSRLPAIGSLIQFGSLEPVVIYFSPEALQNNDFQTICSKEEEKQIDDAD 173
Query: 80 EGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQ 139
EGWTLVTRRKK KQNFS+KES YREY+R GKSQRRKARKN RK PI EE EELPR RQ
Sbjct: 174 EGWTLVTRRKKRKQNFSQKESRSYREYRRTGKSQRRKARKNLRKLLPIIEESEELPRSRQ 233
Query: 140 PITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
PITLKDFF ENF +EIV CH + TT+DDT PS+S E P
Sbjct: 234 PITLKDFFSENFSMEIVPCHTIGTTDDDTFPSNSIEVTP 272
BLAST of PI0028781 vs. NCBI nr
Match:
KAA0052314.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK01877.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 215.3 bits (547), Expect = 4.3e-52
Identity = 110/178 (61.80%), Postives = 138/178 (77.53%), Query Frame = 0
Query: 1 MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQN 60
+++ + D ++EL+LDDVAQ NH ++I P+ R GSLIQFGSLEPV+I+S PE LQN
Sbjct: 168 LILKLALDKKIELELDDVAQTNHATIIIQPDSRLPVVGSLIQFGSLEPVIIHSSPEDLQN 227
Query: 61 NDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARKN 120
ND +T KEEEK V++ +EGWTLVTRRKK KQ+FS+K+S YR+Y+ KGKSQRR RKN
Sbjct: 228 NDFQTDGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKKSGSYRKYRSKGKSQRRNTRKN 287
Query: 121 ARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP 179
+RKF PI EE E L R R+PITLKDFFP+NFP+EIVSCH STT DD PS++ E+ P
Sbjct: 288 SRKFLPIIEESEVLSRTRRPITLKDFFPKNFPMEIVSCHTTSTTADDAFPSNAMEETP 345
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TZU9 | 8.4e-54 | 64.61 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940... | [more] |
A0A5D3BIH8 | 8.4e-54 | 64.61 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3D1E5 | 8.4e-54 | 64.61 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402... | [more] |
A0A5A7TPD2 | 4.2e-53 | 72.33 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3BR60 | 2.1e-52 | 61.80 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |
TYJ98225.1 | 1.7e-53 | 64.61 | uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa] | [more] |
KAA0047477.1 | 1.7e-53 | 64.61 | uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa] | [more] |
TYK18071.1 | 1.7e-53 | 64.61 | uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa] | [more] |
KAA0043275.1 | 8.6e-53 | 72.33 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK29339.1 ty3-gyp... | [more] |
KAA0052314.1 | 4.3e-52 | 61.80 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK01877.1 ty3-gyp... | [more] |
Match Name | E-value | Identity | Description | |