PI0028767 (gene) Melon (PI 482460) v1

Overview
NamePI0028767
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr09: 7805590 .. 7805820 (-)
RNA-Seq ExpressionPI0028767
SyntenyPI0028767
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTGTCATTCTATTCATCTACTTAGGACGACCAATGAATTAGAGTCAACGAAAGTCATAGATGTGGAGGAGATGGTTGCCATGTTCCTCCATGTACTAGCACATGATGTGAAGAATCGAATAATTCAAAGGGAGTTTGTGCGGTCCGACGAGACAATTTCTAGACATTTCAACATTGTCCTCTTGGCAATTTTGCGATTGCATGACGAGTTGTTGAAAAAGCTGTAG

mRNA sequence

ATGTTTTGTCATTCTATTCATCTACTTAGGACGACCAATGAATTAGAGTCAACGAAAGTCATAGATGTGGAGGAGATGGTTGCCATGTTCCTCCATGTACTAGCACATGATGTGAAGAATCGAATAATTCAAAGGGAGTTTGTGCGGTCCGACGAGACAATTTCTAGACATTTCAACATTGTCCTCTTGGCAATTTTGCGATTGCATGACGAGTTGTTGAAAAAGCTGTAG

Coding sequence (CDS)

ATGTTTTGTCATTCTATTCATCTACTTAGGACGACCAATGAATTAGAGTCAACGAAAGTCATAGATGTGGAGGAGATGGTTGCCATGTTCCTCCATGTACTAGCACATGATGTGAAGAATCGAATAATTCAAAGGGAGTTTGTGCGGTCCGACGAGACAATTTCTAGACATTTCAACATTGTCCTCTTGGCAATTTTGCGATTGCATGACGAGTTGTTGAAAAAGCTGTAG

Protein sequence

MFCHSIHLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKKL
Homology
BLAST of PI0028767 vs. ExPASy TrEMBL
Match: A0A5D3CQK6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00100 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.5e-23
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 7  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAIL 66
          HLLRTT  L  TKVIDVEEMVAMFLH+LAHDVKNR+IQREFVRS ET+SRHFN+VLLA+L
Sbjct: 11 HLLRTTAGLVGTKVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSRHFNLVLLAVL 70

Query: 67 RLHDELLKK 76
          RLHDELLKK
Sbjct: 71 RLHDELLKK 79

BLAST of PI0028767 vs. ExPASy TrEMBL
Match: A0A1S3CRU3 (uncharacterized protein LOC103504027 OS=Cucumis melo OX=3656 GN=LOC103504027 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.5e-23
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 7  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAIL 66
          HLLRTT  L  TKVIDVEEMVAMFLH+LAHDVKNR+IQREFVRS ET+SRHFN+VLLA+L
Sbjct: 11 HLLRTTAGLVGTKVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSRHFNLVLLAVL 70

Query: 67 RLHDELLKK 76
          RLHDELLKK
Sbjct: 71 RLHDELLKK 79

BLAST of PI0028767 vs. ExPASy TrEMBL
Match: A0A5D3D9Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00220 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-22
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 7   HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAIL 66
           HLLRT   L STKV+DVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHFN+VLLA++
Sbjct: 55  HLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRSSETISRHFNMVLLAVI 114

Query: 67  RLHDELLKK 76
           RLH+ELLKK
Sbjct: 115 RLHEELLKK 123

BLAST of PI0028767 vs. ExPASy TrEMBL
Match: A0A5A7SVX3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00330 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-22
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = 0

Query: 7  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAIL 66
          HLLRT   L ST+VIDVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHF++VLLAI+
Sbjct: 11 HLLRTIGGLTSTEVIDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFHMVLLAII 70

Query: 67 RLHDELLKKL 77
          RLHDELLKKL
Sbjct: 71 RLHDELLKKL 80

BLAST of PI0028767 vs. ExPASy TrEMBL
Match: A0A5A7V0W7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00580 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-22
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 7   HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAIL 66
           HLLRT   L STKV+DVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHFN+VLLA++
Sbjct: 55  HLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRSSETISRHFNMVLLAVI 114

Query: 67  RLHDELLKK 76
           RLH+ELLKK
Sbjct: 115 RLHEELLKK 123

BLAST of PI0028767 vs. NCBI nr
Match: XP_008466673.1 (PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo] >KAA0063228.1 putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13478.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 5.1e-23
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 7  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAIL 66
          HLLRTT  L  TKVIDVEEMVAMFLH+LAHDVKNR+IQREFVRS ET+SRHFN+VLLA+L
Sbjct: 11 HLLRTTAGLVGTKVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSRHFNLVLLAVL 70

Query: 67 RLHDELLKK 76
          RLHDELLKK
Sbjct: 71 RLHDELLKK 79

BLAST of PI0028767 vs. NCBI nr
Match: KAA0054554.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20397.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 4.3e-22
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 7   HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAIL 66
           HLLRT   L STKV+DVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHFN+VLLA++
Sbjct: 55  HLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRSSETISRHFNMVLLAVI 114

Query: 67  RLHDELLKK 76
           RLH+ELLKK
Sbjct: 115 RLHEELLKK 123

BLAST of PI0028767 vs. NCBI nr
Match: KAA0035412.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK25739.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 4.3e-22
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = 0

Query: 7  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAIL 66
          HLLRT   L ST+VIDVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHF++VLLAI+
Sbjct: 11 HLLRTIGGLTSTEVIDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFHMVLLAII 70

Query: 67 RLHDELLKKL 77
          RLHDELLKKL
Sbjct: 71 RLHDELLKKL 80

BLAST of PI0028767 vs. NCBI nr
Match: KAA0061842.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15414.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 4.3e-22
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 7   HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAIL 66
           HLLRT   L STKV+DVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHFN+VLLA++
Sbjct: 55  HLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRSSETISRHFNMVLLAVI 114

Query: 67  RLHDELLKK 76
           RLH+ELLKK
Sbjct: 115 RLHEELLKK 123

BLAST of PI0028767 vs. NCBI nr
Match: KAA0035627.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30915.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 5.7e-22
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 7   HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAIL 66
           HLLRT   L STKV+DVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHFN+VLLA++
Sbjct: 55  HLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVI 114

Query: 67  RLHDELLKK 76
           RLH+ELLKK
Sbjct: 115 RLHEELLKK 123

BLAST of PI0028767 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 4.2e-07
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 8   LLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILR 67
           LL+T   L  T  I +E  +A+FL ++ H+++ R +Q  F  S ETISRHFN VL A++ 
Sbjct: 59  LLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIA 118

Query: 68  LHDELLK 75
           +  +  +
Sbjct: 119 ISKDFFQ 125

BLAST of PI0028767 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.5e-04
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 7   HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLA 65
           ++L+T  +L+ T  I +EE VAMFL +  H+   R +   F R+ ET+ R F  VL A
Sbjct: 82  NMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREVLTA 139

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CQK62.5e-2385.51Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CRU32.5e-2385.51uncharacterized protein LOC103504027 OS=Cucumis melo OX=3656 GN=LOC103504027 PE=... [more]
A0A5D3D9Z32.1e-2281.16Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SVX32.1e-2282.86Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7V0W72.1e-2281.16Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_008466673.15.1e-2385.51PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo] >KAA0063228.1 put... [more]
KAA0054554.14.3e-2281.16retrotransposon protein [Cucumis melo var. makuwa] >TYK20397.1 retrotransposon p... [more]
KAA0035412.14.3e-2282.86putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK25739.1 putative nucleas... [more]
KAA0061842.14.3e-2281.16retrotransposon protein [Cucumis melo var. makuwa] >TYK15414.1 retrotransposon p... [more]
KAA0035627.15.7e-2281.16retrotransposon protein [Cucumis melo var. makuwa] >TYK30915.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
AT5G41980.14.2e-0738.81CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT1G43722.11.5e-0439.66unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 7..75
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 7..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028767.1PI0028767.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding