PI0028704 (gene) Melon (PI 482460) v1

Overview
NamePI0028704
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionTMV resistance protein N-like
Locationchr05: 2996041 .. 2997010 (-)
RNA-Seq ExpressionPI0028704
SyntenyPI0028704
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAGTGGAATCATGTCACAGTCTGGTTTGACGTTGTGAAATGCTCTGAGGTCACCGTAACTATTAAAAGCTGTGGTGTCCATCTCACTGAAGAGGTCCATGGAATACAAAACGATGTCAAGGGGCCAGGGGTAATTTATACAGATTTTGATCAACCACACTAATTGCCCTGCCGGTGAGTGAGATTATTGATTGTTTTAAGAAGGCTTGATTAGCTGTCCTGTTTTAGAAATTTTTTGCAACAACATTATTTTGTCTATTTGAAGATATGATTCATTTAAACTTTTCTTTGACAAACTTTATCTAAAATCTATTTCTATAGCATATCCATAATTGTTTCTTAAAAGGGTTTAGGGTTCTTACTCTTAACCAATTCAAACAGAGCAGTTGTTAGTTTTCAAAATTACTTGACATTATTTTGGTTTTGGTTTTGTTGTTATTATTATTTGTTTTAAAACTTATTGCCATTGTTTTGGTTGTAATCAGTTGAATAGTGTTTTGAGTAAATTGTGGTGTTTCGTGTATGATGTTCACTATGGCACAGGGATGTCGTAAAATCCTTTGCTCAAGAAGTATCTGCCAAATCAGATTGCAATGCAACGTTGCATGCAGAAAAATTTCCAGTTTGGAATGATTCCAAAATGCAACAACATATGAATTTTTCCTTACCTGTAACTTCTCAAGGTGTTCCAAGGATACGTGGTATGGAAGGCATGGCAGAGACAACACTTGCCAACTCTATACGTAACAAATTTGAAAGAAGTCAGAATATTTTCTGTGGAAAAAAAGTTTTGAATCATTCTACTGGCTTTCTTCGTGGAGATGGAAATGGTAATCAGTCCGATCTCAAGTGATAGATTGTCTTCCCAAAATATCTTAGAATTTTTGACGATCCTAAATGATGTAGCTCATGGAACTGGTAATAGGTTCCGTTCAAGATTTTTAAGGGTGGATGATATAAAATAA

mRNA sequence

ATGAATGAGTGGAATCATGTCACAGTCTGGTTTGACGTTGTGAAATGCTCTGAGGTCACCGTAACTATTAAAAGCTGTGGTGTCCATCTCACTGAAGAGGTCCATGGAATACAAAACGATGTCAAGGGGGATGTCGTAAAATCCTTTGCTCAAGAAGTATCTGCCAAATCAGATTGCAATGCAACGTTGCATGCAGAAAAATTTCCAGTTTGGAATGATTCCAAAATGCAACAACATATGAATTTTTCCTTACCTGTAACTTCTCAAGGTGTTCCAAGGATACGTGGTATGGAAGGCATGGCAGAGACAACACTTGCCAACTCTATACGTAACAAATTTGAAAGAAGTCAGAATATTTTCTGTGGAAAAAAAATGGAAATGGTAATCAGTCCGATCTCAAGTGATAGATTGTCTTCCCAAAATATCTTAGAATTTTTGACGATCCTAAATGATGTAGCTCATGGAACTGGTAATAGGTTCCGTTCAAGATTTTTAAGGGTGGATGATATAAAATAA

Coding sequence (CDS)

ATGAATGAGTGGAATCATGTCACAGTCTGGTTTGACGTTGTGAAATGCTCTGAGGTCACCGTAACTATTAAAAGCTGTGGTGTCCATCTCACTGAAGAGGTCCATGGAATACAAAACGATGTCAAGGGGGATGTCGTAAAATCCTTTGCTCAAGAAGTATCTGCCAAATCAGATTGCAATGCAACGTTGCATGCAGAAAAATTTCCAGTTTGGAATGATTCCAAAATGCAACAACATATGAATTTTTCCTTACCTGTAACTTCTCAAGGTGTTCCAAGGATACGTGGTATGGAAGGCATGGCAGAGACAACACTTGCCAACTCTATACGTAACAAATTTGAAAGAAGTCAGAATATTTTCTGTGGAAAAAAAATGGAAATGGTAATCAGTCCGATCTCAAGTGATAGATTGTCTTCCCAAAATATCTTAGAATTTTTGACGATCCTAAATGATGTAGCTCATGGAACTGGTAATAGGTTCCGTTCAAGATTTTTAAGGGTGGATGATATAAAATAA

Protein sequence

MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKGDVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAETTLANSIRNKFERSQNIFCGKKMEMVISPISSDRLSSQNILEFLTILNDVAHGTGNRFRSRFLRVDDIK
Homology
BLAST of PI0028704 vs. ExPASy TrEMBL
Match: A0A1S3C0A4 (LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103495402 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.7e-67
Identity = 146/211 (69.19%), Postives = 152/211 (72.04%), Query Frame = 0

Query: 1    MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
            MNEWNHVTVWF+VVKCSEVTVTIK CGVHLTEEVHGIQNDVKG                 
Sbjct: 1165 MNEWNHVTVWFEVVKCSEVTVTIKCCGVHLTEEVHGIQNDVKGPGVIYTVFDQPDKLPSR 1224

Query: 61   DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
            DVVKSFAQEVSAKSDCNA LHAE FPVWNDSKMQ+HMNF L VTSQGV RIRGMEGMAET
Sbjct: 1225 DVVKSFAQEVSAKSDCNAILHAENFPVWNDSKMQRHMNFPLHVTSQGVTRIRGMEGMAET 1284

Query: 121  TLANSIRNKFERSQNIFCGKKM-----------------EMVISPISSDRLSSQNILEFL 172
             LANSI NK+ERSQN+F  KK+                 EMV SPISSDRLSSQ  L   
Sbjct: 1285 ILANSICNKYERSQNLFSAKKVLNHSTAFLRGDGNGLSWEMVDSPISSDRLSSQKYLRIF 1344

BLAST of PI0028704 vs. ExPASy TrEMBL
Match: A0A0A0LLK3 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G020890 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 6.3e-67
Identity = 143/211 (67.77%), Postives = 149/211 (70.62%), Query Frame = 0

Query: 1    MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
            MNEWNHVTVWF+VVKCSE TVTIK CGVHLTEEVHGIQNDVKG                 
Sbjct: 1167 MNEWNHVTVWFEVVKCSEATVTIKCCGVHLTEEVHGIQNDVKGPGVVYTVFDQLDKLPSR 1226

Query: 61   DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
            DV+KSF QEVSAKSDCNA LHAE FPVWNDSKMQQHMNF L VTSQGV RIRGMEGMAET
Sbjct: 1227 DVIKSFGQEVSAKSDCNAMLHAENFPVWNDSKMQQHMNFPLHVTSQGVTRIRGMEGMAET 1286

Query: 121  TLANSIRNKFERSQNIFCGKK-----------------MEMVISPISSDRLSSQNILEFL 172
            TLANSI NK+ERS+N+F  KK                  EMV  PI SDRLSSQ  L   
Sbjct: 1287 TLANSICNKYERSRNLFSAKKALNHSTGFLCGDGNGLSWEMVDRPILSDRLSSQKYLRIF 1346

BLAST of PI0028704 vs. ExPASy TrEMBL
Match: A0A5A7VCN0 (TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00680 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 145/211 (68.72%), Postives = 151/211 (71.56%), Query Frame = 0

Query: 1    MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
            MNEWNHVTVWF+VVKCSEVTVTIK CGVHLTEEVHGIQNDVKG                 
Sbjct: 1139 MNEWNHVTVWFEVVKCSEVTVTIKCCGVHLTEEVHGIQNDVKGPGVIYTVFDQPDKLPSR 1198

Query: 61   DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
            DVVKSFAQEVSAKSDCNA LHAE FPVW DSKMQ+HMNF L VTSQGV RIRGMEGMAET
Sbjct: 1199 DVVKSFAQEVSAKSDCNAILHAENFPVWIDSKMQRHMNFPLHVTSQGVTRIRGMEGMAET 1258

Query: 121  TLANSIRNKFERSQNIFCGKKM-----------------EMVISPISSDRLSSQNILEFL 172
             LANSI NK+ERSQN+F  KK+                 EMV SPISSDRLSSQ  L   
Sbjct: 1259 ILANSICNKYERSQNLFSAKKVLNHSTAFLRGDGNGLSWEMVDSPISSDRLSSQKYLRIF 1318

BLAST of PI0028704 vs. ExPASy TrEMBL
Match: A0A6J1G4A0 (TMV resistance protein N-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.9e-35
Identity = 101/206 (49.03%), Postives = 118/206 (57.28%), Query Frame = 0

Query: 2    NEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG-----------------D 61
            N+WN V VWF+VVK  EV VTI+SCGVHLT+EV GIQND+KG                 D
Sbjct: 1049 NDWNDVIVWFEVVKRREVNVTIRSCGVHLTDEVDGIQNDIKGQGVIYTDYDQSVELGSWD 1108

Query: 62   VVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAETT 121
            V+KSF QEVSA+SDCNA LHA+ FPV  DSK+Q   NF L VT  GV RI GMEGMAETT
Sbjct: 1109 VIKSFTQEVSARSDCNAMLHAQNFPVEIDSKIQPLTNFPLHVTCYGVTRISGMEGMAETT 1168

Query: 122  LANSI-----RNKFERSQNIFCGKKMEM--------VISPISSDRLSSQNILEF------ 172
            LA SI      N F R      G  +EM          S  +S+R SSQ  L        
Sbjct: 1169 LAKSIFDKLVDNSFGREALNDWGGFIEMNKLGFRGGSRSCNTSNRPSSQKYLRVFDGGYK 1228

BLAST of PI0028704 vs. ExPASy TrEMBL
Match: A0A6J1G421 (TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.9e-35
Identity = 101/206 (49.03%), Postives = 118/206 (57.28%), Query Frame = 0

Query: 2    NEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG-----------------D 61
            N+WN V VWF+VVK  EV VTI+SCGVHLT+EV GIQND+KG                 D
Sbjct: 1158 NDWNDVIVWFEVVKRREVNVTIRSCGVHLTDEVDGIQNDIKGQGVIYTDYDQSVELGSWD 1217

Query: 62   VVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAETT 121
            V+KSF QEVSA+SDCNA LHA+ FPV  DSK+Q   NF L VT  GV RI GMEGMAETT
Sbjct: 1218 VIKSFTQEVSARSDCNAMLHAQNFPVEIDSKIQPLTNFPLHVTCYGVTRISGMEGMAETT 1277

Query: 122  LANSI-----RNKFERSQNIFCGKKMEM--------VISPISSDRLSSQNILEF------ 172
            LA SI      N F R      G  +EM          S  +S+R SSQ  L        
Sbjct: 1278 LAKSIFDKLVDNSFGREALNDWGGFIEMNKLGFRGGSRSCNTSNRPSSQKYLRVFDGGYK 1337

BLAST of PI0028704 vs. NCBI nr
Match: XP_008455171.1 (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 265.4 bits (677), Expect = 3.4e-67
Identity = 146/211 (69.19%), Postives = 152/211 (72.04%), Query Frame = 0

Query: 1    MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
            MNEWNHVTVWF+VVKCSEVTVTIK CGVHLTEEVHGIQNDVKG                 
Sbjct: 1165 MNEWNHVTVWFEVVKCSEVTVTIKCCGVHLTEEVHGIQNDVKGPGVIYTVFDQPDKLPSR 1224

Query: 61   DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
            DVVKSFAQEVSAKSDCNA LHAE FPVWNDSKMQ+HMNF L VTSQGV RIRGMEGMAET
Sbjct: 1225 DVVKSFAQEVSAKSDCNAILHAENFPVWNDSKMQRHMNFPLHVTSQGVTRIRGMEGMAET 1284

Query: 121  TLANSIRNKFERSQNIFCGKKM-----------------EMVISPISSDRLSSQNILEFL 172
             LANSI NK+ERSQN+F  KK+                 EMV SPISSDRLSSQ  L   
Sbjct: 1285 ILANSICNKYERSQNLFSAKKVLNHSTAFLRGDGNGLSWEMVDSPISSDRLSSQKYLRIF 1344

BLAST of PI0028704 vs. NCBI nr
Match: XP_031736894.1 (TMV resistance protein N [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 143/211 (67.77%), Postives = 149/211 (70.62%), Query Frame = 0

Query: 1    MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
            MNEWNHVTVWF+VVKCSE TVTIK CGVHLTEEVHGIQNDVKG                 
Sbjct: 1167 MNEWNHVTVWFEVVKCSEATVTIKCCGVHLTEEVHGIQNDVKGPGVVYTVFDQLDKLPSR 1226

Query: 61   DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
            DV+KSF QEVSAKSDCNA LHAE FPVWNDSKMQQHMNF L VTSQGV RIRGMEGMAET
Sbjct: 1227 DVIKSFGQEVSAKSDCNAMLHAENFPVWNDSKMQQHMNFPLHVTSQGVTRIRGMEGMAET 1286

Query: 121  TLANSIRNKFERSQNIFCGKK-----------------MEMVISPISSDRLSSQNILEFL 172
            TLANSI NK+ERS+N+F  KK                  EMV  PI SDRLSSQ  L   
Sbjct: 1287 TLANSICNKYERSRNLFSAKKALNHSTGFLCGDGNGLSWEMVDRPILSDRLSSQKYLRIF 1346

BLAST of PI0028704 vs. NCBI nr
Match: KAE8651581.1 (hypothetical protein Csa_023426 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 143/211 (67.77%), Postives = 149/211 (70.62%), Query Frame = 0

Query: 1    MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
            MNEWNHVTVWF+VVKCSE TVTIK CGVHLTEEVHGIQNDVKG                 
Sbjct: 1167 MNEWNHVTVWFEVVKCSEATVTIKCCGVHLTEEVHGIQNDVKGPGVVYTVFDQLDKLPSR 1226

Query: 61   DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
            DV+KSF QEVSAKSDCNA LHAE FPVWNDSKMQQHMNF L VTSQGV RIRGMEGMAET
Sbjct: 1227 DVIKSFGQEVSAKSDCNAMLHAENFPVWNDSKMQQHMNFPLHVTSQGVTRIRGMEGMAET 1286

Query: 121  TLANSIRNKFERSQNIFCGKK-----------------MEMVISPISSDRLSSQNILEFL 172
            TLANSI NK+ERS+N+F  KK                  EMV  PI SDRLSSQ  L   
Sbjct: 1287 TLANSICNKYERSRNLFSAKKALNHSTGFLCGDGNGLSWEMVDRPILSDRLSSQKYLRIF 1346

BLAST of PI0028704 vs. NCBI nr
Match: KAA0063675.1 (TMV resistance protein N-like [Cucumis melo var. makuwa] >TYK18352.1 TMV resistance protein N-like [Cucumis melo var. makuwa])

HSP 1 Score: 261.9 bits (668), Expect = 3.8e-66
Identity = 145/211 (68.72%), Postives = 151/211 (71.56%), Query Frame = 0

Query: 1    MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
            MNEWNHVTVWF+VVKCSEVTVTIK CGVHLTEEVHGIQNDVKG                 
Sbjct: 1139 MNEWNHVTVWFEVVKCSEVTVTIKCCGVHLTEEVHGIQNDVKGPGVIYTVFDQPDKLPSR 1198

Query: 61   DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
            DVVKSFAQEVSAKSDCNA LHAE FPVW DSKMQ+HMNF L VTSQGV RIRGMEGMAET
Sbjct: 1199 DVVKSFAQEVSAKSDCNAILHAENFPVWIDSKMQRHMNFPLHVTSQGVTRIRGMEGMAET 1258

Query: 121  TLANSIRNKFERSQNIFCGKKM-----------------EMVISPISSDRLSSQNILEFL 172
             LANSI NK+ERSQN+F  KK+                 EMV SPISSDRLSSQ  L   
Sbjct: 1259 ILANSICNKYERSQNLFSAKKVLNHSTAFLRGDGNGLSWEMVDSPISSDRLSSQKYLRIF 1318

BLAST of PI0028704 vs. NCBI nr
Match: XP_038877735.1 (disease resistance protein RPS6-like, partial [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 4.7e-48
Identity = 125/228 (54.82%), Postives = 138/228 (60.53%), Query Frame = 0

Query: 1    MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
            MNEWNHV VWF+VVKCSEVTVTI+SCGVHLTEEVHGIQNDVKG                 
Sbjct: 1096 MNEWNHVIVWFEVVKCSEVTVTIRSCGVHLTEEVHGIQNDVKGPGVIYTDFDQPDELPSR 1155

Query: 61   DVVKSFAQEVSAKSDCNATLHAEKFPVW-NDSKMQQHMNFSLPVTSQGVPRIRGMEGMAE 120
            DVVK FAQEVSAKSDCNA LHAE FPVW +DSKMQ+HMNF L VTS+GV RIRGMEGMAE
Sbjct: 1156 DVVKFFAQEVSAKSDCNAMLHAENFPVWKDDSKMQRHMNFPLHVTSEGVTRIRGMEGMAE 1215

Query: 121  TTLANSIRNKF--------ERSQNI------------------FCGKKMEMVI------- 172
            TTLA SI +K         ERS++                   F       +        
Sbjct: 1216 TTLAKSICDKVESTYFWRDERSESFGRKALNHSGGFLRVNEHGFSSSFSSRLKAGGCERG 1275

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3C0A41.7e-6769.19LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LO... [more]
A0A0A0LLK36.3e-6767.77TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G020890 PE=4 SV... [more]
A0A5A7VCN01.8e-6668.72TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A6J1G4A02.9e-3549.03TMV resistance protein N-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1G4212.9e-3549.03TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
Match NameE-valueIdentityDescription
XP_008455171.13.4e-6769.19PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo][more]
XP_031736894.11.3e-6667.77TMV resistance protein N [Cucumis sativus][more]
KAE8651581.11.3e-6667.77hypothetical protein Csa_023426 [Cucumis sativus][more]
KAA0063675.13.8e-6668.72TMV resistance protein N-like [Cucumis melo var. makuwa] >TYK18352.1 TMV resista... [more]
XP_038877735.14.7e-4854.82disease resistance protein RPS6-like, partial [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028704.1PI0028704.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050896 response to stimulus