Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAGTGGAATCATGTCACAGTCTGGTTTGACGTTGTGAAATGCTCTGAGGTCACCGTAACTATTAAAAGCTGTGGTGTCCATCTCACTGAAGAGGTCCATGGAATACAAAACGATGTCAAGGGGCCAGGGGTAATTTATACAGATTTTGATCAACCACACTAATTGCCCTGCCGGTGAGTGAGATTATTGATTGTTTTAAGAAGGCTTGATTAGCTGTCCTGTTTTAGAAATTTTTTGCAACAACATTATTTTGTCTATTTGAAGATATGATTCATTTAAACTTTTCTTTGACAAACTTTATCTAAAATCTATTTCTATAGCATATCCATAATTGTTTCTTAAAAGGGTTTAGGGTTCTTACTCTTAACCAATTCAAACAGAGCAGTTGTTAGTTTTCAAAATTACTTGACATTATTTTGGTTTTGGTTTTGTTGTTATTATTATTTGTTTTAAAACTTATTGCCATTGTTTTGGTTGTAATCAGTTGAATAGTGTTTTGAGTAAATTGTGGTGTTTCGTGTATGATGTTCACTATGGCACAGGGATGTCGTAAAATCCTTTGCTCAAGAAGTATCTGCCAAATCAGATTGCAATGCAACGTTGCATGCAGAAAAATTTCCAGTTTGGAATGATTCCAAAATGCAACAACATATGAATTTTTCCTTACCTGTAACTTCTCAAGGTGTTCCAAGGATACGTGGTATGGAAGGCATGGCAGAGACAACACTTGCCAACTCTATACGTAACAAATTTGAAAGAAGTCAGAATATTTTCTGTGGAAAAAAAGTTTTGAATCATTCTACTGGCTTTCTTCGTGGAGATGGAAATGGTAATCAGTCCGATCTCAAGTGATAGATTGTCTTCCCAAAATATCTTAGAATTTTTGACGATCCTAAATGATGTAGCTCATGGAACTGGTAATAGGTTCCGTTCAAGATTTTTAAGGGTGGATGATATAAAATAA
mRNA sequence
ATGAATGAGTGGAATCATGTCACAGTCTGGTTTGACGTTGTGAAATGCTCTGAGGTCACCGTAACTATTAAAAGCTGTGGTGTCCATCTCACTGAAGAGGTCCATGGAATACAAAACGATGTCAAGGGGGATGTCGTAAAATCCTTTGCTCAAGAAGTATCTGCCAAATCAGATTGCAATGCAACGTTGCATGCAGAAAAATTTCCAGTTTGGAATGATTCCAAAATGCAACAACATATGAATTTTTCCTTACCTGTAACTTCTCAAGGTGTTCCAAGGATACGTGGTATGGAAGGCATGGCAGAGACAACACTTGCCAACTCTATACGTAACAAATTTGAAAGAAGTCAGAATATTTTCTGTGGAAAAAAAATGGAAATGGTAATCAGTCCGATCTCAAGTGATAGATTGTCTTCCCAAAATATCTTAGAATTTTTGACGATCCTAAATGATGTAGCTCATGGAACTGGTAATAGGTTCCGTTCAAGATTTTTAAGGGTGGATGATATAAAATAA
Coding sequence (CDS)
ATGAATGAGTGGAATCATGTCACAGTCTGGTTTGACGTTGTGAAATGCTCTGAGGTCACCGTAACTATTAAAAGCTGTGGTGTCCATCTCACTGAAGAGGTCCATGGAATACAAAACGATGTCAAGGGGGATGTCGTAAAATCCTTTGCTCAAGAAGTATCTGCCAAATCAGATTGCAATGCAACGTTGCATGCAGAAAAATTTCCAGTTTGGAATGATTCCAAAATGCAACAACATATGAATTTTTCCTTACCTGTAACTTCTCAAGGTGTTCCAAGGATACGTGGTATGGAAGGCATGGCAGAGACAACACTTGCCAACTCTATACGTAACAAATTTGAAAGAAGTCAGAATATTTTCTGTGGAAAAAAAATGGAAATGGTAATCAGTCCGATCTCAAGTGATAGATTGTCTTCCCAAAATATCTTAGAATTTTTGACGATCCTAAATGATGTAGCTCATGGAACTGGTAATAGGTTCCGTTCAAGATTTTTAAGGGTGGATGATATAAAATAA
Protein sequence
MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKGDVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAETTLANSIRNKFERSQNIFCGKKMEMVISPISSDRLSSQNILEFLTILNDVAHGTGNRFRSRFLRVDDIK
Homology
BLAST of PI0028704 vs. ExPASy TrEMBL
Match:
A0A1S3C0A4 (LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103495402 PE=4 SV=1)
HSP 1 Score: 265.4 bits (677), Expect = 1.7e-67
Identity = 146/211 (69.19%), Postives = 152/211 (72.04%), Query Frame = 0
Query: 1 MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
MNEWNHVTVWF+VVKCSEVTVTIK CGVHLTEEVHGIQNDVKG
Sbjct: 1165 MNEWNHVTVWFEVVKCSEVTVTIKCCGVHLTEEVHGIQNDVKGPGVIYTVFDQPDKLPSR 1224
Query: 61 DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
DVVKSFAQEVSAKSDCNA LHAE FPVWNDSKMQ+HMNF L VTSQGV RIRGMEGMAET
Sbjct: 1225 DVVKSFAQEVSAKSDCNAILHAENFPVWNDSKMQRHMNFPLHVTSQGVTRIRGMEGMAET 1284
Query: 121 TLANSIRNKFERSQNIFCGKKM-----------------EMVISPISSDRLSSQNILEFL 172
LANSI NK+ERSQN+F KK+ EMV SPISSDRLSSQ L
Sbjct: 1285 ILANSICNKYERSQNLFSAKKVLNHSTAFLRGDGNGLSWEMVDSPISSDRLSSQKYLRIF 1344
BLAST of PI0028704 vs. ExPASy TrEMBL
Match:
A0A0A0LLK3 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G020890 PE=4 SV=1)
HSP 1 Score: 263.5 bits (672), Expect = 6.3e-67
Identity = 143/211 (67.77%), Postives = 149/211 (70.62%), Query Frame = 0
Query: 1 MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
MNEWNHVTVWF+VVKCSE TVTIK CGVHLTEEVHGIQNDVKG
Sbjct: 1167 MNEWNHVTVWFEVVKCSEATVTIKCCGVHLTEEVHGIQNDVKGPGVVYTVFDQLDKLPSR 1226
Query: 61 DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
DV+KSF QEVSAKSDCNA LHAE FPVWNDSKMQQHMNF L VTSQGV RIRGMEGMAET
Sbjct: 1227 DVIKSFGQEVSAKSDCNAMLHAENFPVWNDSKMQQHMNFPLHVTSQGVTRIRGMEGMAET 1286
Query: 121 TLANSIRNKFERSQNIFCGKK-----------------MEMVISPISSDRLSSQNILEFL 172
TLANSI NK+ERS+N+F KK EMV PI SDRLSSQ L
Sbjct: 1287 TLANSICNKYERSRNLFSAKKALNHSTGFLCGDGNGLSWEMVDRPILSDRLSSQKYLRIF 1346
BLAST of PI0028704 vs. ExPASy TrEMBL
Match:
A0A5A7VCN0 (TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00680 PE=4 SV=1)
HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 145/211 (68.72%), Postives = 151/211 (71.56%), Query Frame = 0
Query: 1 MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
MNEWNHVTVWF+VVKCSEVTVTIK CGVHLTEEVHGIQNDVKG
Sbjct: 1139 MNEWNHVTVWFEVVKCSEVTVTIKCCGVHLTEEVHGIQNDVKGPGVIYTVFDQPDKLPSR 1198
Query: 61 DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
DVVKSFAQEVSAKSDCNA LHAE FPVW DSKMQ+HMNF L VTSQGV RIRGMEGMAET
Sbjct: 1199 DVVKSFAQEVSAKSDCNAILHAENFPVWIDSKMQRHMNFPLHVTSQGVTRIRGMEGMAET 1258
Query: 121 TLANSIRNKFERSQNIFCGKKM-----------------EMVISPISSDRLSSQNILEFL 172
LANSI NK+ERSQN+F KK+ EMV SPISSDRLSSQ L
Sbjct: 1259 ILANSICNKYERSQNLFSAKKVLNHSTAFLRGDGNGLSWEMVDSPISSDRLSSQKYLRIF 1318
BLAST of PI0028704 vs. ExPASy TrEMBL
Match:
A0A6J1G4A0 (TMV resistance protein N-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 2.9e-35
Identity = 101/206 (49.03%), Postives = 118/206 (57.28%), Query Frame = 0
Query: 2 NEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG-----------------D 61
N+WN V VWF+VVK EV VTI+SCGVHLT+EV GIQND+KG D
Sbjct: 1049 NDWNDVIVWFEVVKRREVNVTIRSCGVHLTDEVDGIQNDIKGQGVIYTDYDQSVELGSWD 1108
Query: 62 VVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAETT 121
V+KSF QEVSA+SDCNA LHA+ FPV DSK+Q NF L VT GV RI GMEGMAETT
Sbjct: 1109 VIKSFTQEVSARSDCNAMLHAQNFPVEIDSKIQPLTNFPLHVTCYGVTRISGMEGMAETT 1168
Query: 122 LANSI-----RNKFERSQNIFCGKKMEM--------VISPISSDRLSSQNILEF------ 172
LA SI N F R G +EM S +S+R SSQ L
Sbjct: 1169 LAKSIFDKLVDNSFGREALNDWGGFIEMNKLGFRGGSRSCNTSNRPSSQKYLRVFDGGYK 1228
BLAST of PI0028704 vs. ExPASy TrEMBL
Match:
A0A6J1G421 (TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 2.9e-35
Identity = 101/206 (49.03%), Postives = 118/206 (57.28%), Query Frame = 0
Query: 2 NEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG-----------------D 61
N+WN V VWF+VVK EV VTI+SCGVHLT+EV GIQND+KG D
Sbjct: 1158 NDWNDVIVWFEVVKRREVNVTIRSCGVHLTDEVDGIQNDIKGQGVIYTDYDQSVELGSWD 1217
Query: 62 VVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAETT 121
V+KSF QEVSA+SDCNA LHA+ FPV DSK+Q NF L VT GV RI GMEGMAETT
Sbjct: 1218 VIKSFTQEVSARSDCNAMLHAQNFPVEIDSKIQPLTNFPLHVTCYGVTRISGMEGMAETT 1277
Query: 122 LANSI-----RNKFERSQNIFCGKKMEM--------VISPISSDRLSSQNILEF------ 172
LA SI N F R G +EM S +S+R SSQ L
Sbjct: 1278 LAKSIFDKLVDNSFGREALNDWGGFIEMNKLGFRGGSRSCNTSNRPSSQKYLRVFDGGYK 1337
BLAST of PI0028704 vs. NCBI nr
Match:
XP_008455171.1 (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])
HSP 1 Score: 265.4 bits (677), Expect = 3.4e-67
Identity = 146/211 (69.19%), Postives = 152/211 (72.04%), Query Frame = 0
Query: 1 MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
MNEWNHVTVWF+VVKCSEVTVTIK CGVHLTEEVHGIQNDVKG
Sbjct: 1165 MNEWNHVTVWFEVVKCSEVTVTIKCCGVHLTEEVHGIQNDVKGPGVIYTVFDQPDKLPSR 1224
Query: 61 DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
DVVKSFAQEVSAKSDCNA LHAE FPVWNDSKMQ+HMNF L VTSQGV RIRGMEGMAET
Sbjct: 1225 DVVKSFAQEVSAKSDCNAILHAENFPVWNDSKMQRHMNFPLHVTSQGVTRIRGMEGMAET 1284
Query: 121 TLANSIRNKFERSQNIFCGKKM-----------------EMVISPISSDRLSSQNILEFL 172
LANSI NK+ERSQN+F KK+ EMV SPISSDRLSSQ L
Sbjct: 1285 ILANSICNKYERSQNLFSAKKVLNHSTAFLRGDGNGLSWEMVDSPISSDRLSSQKYLRIF 1344
BLAST of PI0028704 vs. NCBI nr
Match:
XP_031736894.1 (TMV resistance protein N [Cucumis sativus])
HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 143/211 (67.77%), Postives = 149/211 (70.62%), Query Frame = 0
Query: 1 MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
MNEWNHVTVWF+VVKCSE TVTIK CGVHLTEEVHGIQNDVKG
Sbjct: 1167 MNEWNHVTVWFEVVKCSEATVTIKCCGVHLTEEVHGIQNDVKGPGVVYTVFDQLDKLPSR 1226
Query: 61 DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
DV+KSF QEVSAKSDCNA LHAE FPVWNDSKMQQHMNF L VTSQGV RIRGMEGMAET
Sbjct: 1227 DVIKSFGQEVSAKSDCNAMLHAENFPVWNDSKMQQHMNFPLHVTSQGVTRIRGMEGMAET 1286
Query: 121 TLANSIRNKFERSQNIFCGKK-----------------MEMVISPISSDRLSSQNILEFL 172
TLANSI NK+ERS+N+F KK EMV PI SDRLSSQ L
Sbjct: 1287 TLANSICNKYERSRNLFSAKKALNHSTGFLCGDGNGLSWEMVDRPILSDRLSSQKYLRIF 1346
BLAST of PI0028704 vs. NCBI nr
Match:
KAE8651581.1 (hypothetical protein Csa_023426 [Cucumis sativus])
HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 143/211 (67.77%), Postives = 149/211 (70.62%), Query Frame = 0
Query: 1 MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
MNEWNHVTVWF+VVKCSE TVTIK CGVHLTEEVHGIQNDVKG
Sbjct: 1167 MNEWNHVTVWFEVVKCSEATVTIKCCGVHLTEEVHGIQNDVKGPGVVYTVFDQLDKLPSR 1226
Query: 61 DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
DV+KSF QEVSAKSDCNA LHAE FPVWNDSKMQQHMNF L VTSQGV RIRGMEGMAET
Sbjct: 1227 DVIKSFGQEVSAKSDCNAMLHAENFPVWNDSKMQQHMNFPLHVTSQGVTRIRGMEGMAET 1286
Query: 121 TLANSIRNKFERSQNIFCGKK-----------------MEMVISPISSDRLSSQNILEFL 172
TLANSI NK+ERS+N+F KK EMV PI SDRLSSQ L
Sbjct: 1287 TLANSICNKYERSRNLFSAKKALNHSTGFLCGDGNGLSWEMVDRPILSDRLSSQKYLRIF 1346
BLAST of PI0028704 vs. NCBI nr
Match:
KAA0063675.1 (TMV resistance protein N-like [Cucumis melo var. makuwa] >TYK18352.1 TMV resistance protein N-like [Cucumis melo var. makuwa])
HSP 1 Score: 261.9 bits (668), Expect = 3.8e-66
Identity = 145/211 (68.72%), Postives = 151/211 (71.56%), Query Frame = 0
Query: 1 MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
MNEWNHVTVWF+VVKCSEVTVTIK CGVHLTEEVHGIQNDVKG
Sbjct: 1139 MNEWNHVTVWFEVVKCSEVTVTIKCCGVHLTEEVHGIQNDVKGPGVIYTVFDQPDKLPSR 1198
Query: 61 DVVKSFAQEVSAKSDCNATLHAEKFPVWNDSKMQQHMNFSLPVTSQGVPRIRGMEGMAET 120
DVVKSFAQEVSAKSDCNA LHAE FPVW DSKMQ+HMNF L VTSQGV RIRGMEGMAET
Sbjct: 1199 DVVKSFAQEVSAKSDCNAILHAENFPVWIDSKMQRHMNFPLHVTSQGVTRIRGMEGMAET 1258
Query: 121 TLANSIRNKFERSQNIFCGKKM-----------------EMVISPISSDRLSSQNILEFL 172
LANSI NK+ERSQN+F KK+ EMV SPISSDRLSSQ L
Sbjct: 1259 ILANSICNKYERSQNLFSAKKVLNHSTAFLRGDGNGLSWEMVDSPISSDRLSSQKYLRIF 1318
BLAST of PI0028704 vs. NCBI nr
Match:
XP_038877735.1 (disease resistance protein RPS6-like, partial [Benincasa hispida])
HSP 1 Score: 201.8 bits (512), Expect = 4.7e-48
Identity = 125/228 (54.82%), Postives = 138/228 (60.53%), Query Frame = 0
Query: 1 MNEWNHVTVWFDVVKCSEVTVTIKSCGVHLTEEVHGIQNDVKG----------------- 60
MNEWNHV VWF+VVKCSEVTVTI+SCGVHLTEEVHGIQNDVKG
Sbjct: 1096 MNEWNHVIVWFEVVKCSEVTVTIRSCGVHLTEEVHGIQNDVKGPGVIYTDFDQPDELPSR 1155
Query: 61 DVVKSFAQEVSAKSDCNATLHAEKFPVW-NDSKMQQHMNFSLPVTSQGVPRIRGMEGMAE 120
DVVK FAQEVSAKSDCNA LHAE FPVW +DSKMQ+HMNF L VTS+GV RIRGMEGMAE
Sbjct: 1156 DVVKFFAQEVSAKSDCNAMLHAENFPVWKDDSKMQRHMNFPLHVTSEGVTRIRGMEGMAE 1215
Query: 121 TTLANSIRNKF--------ERSQNI------------------FCGKKMEMVI------- 172
TTLA SI +K ERS++ F +
Sbjct: 1216 TTLAKSICDKVESTYFWRDERSESFGRKALNHSGGFLRVNEHGFSSSFSSRLKAGGCERG 1275
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3C0A4 | 1.7e-67 | 69.19 | LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LO... | [more] |
A0A0A0LLK3 | 6.3e-67 | 67.77 | TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G020890 PE=4 SV... | [more] |
A0A5A7VCN0 | 1.8e-66 | 68.72 | TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A6J1G4A0 | 2.9e-35 | 49.03 | TMV resistance protein N-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
A0A6J1G421 | 2.9e-35 | 49.03 | TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
Match Name | E-value | Identity | Description | |
XP_008455171.1 | 3.4e-67 | 69.19 | PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo] | [more] |
XP_031736894.1 | 1.3e-66 | 67.77 | TMV resistance protein N [Cucumis sativus] | [more] |
KAE8651581.1 | 1.3e-66 | 67.77 | hypothetical protein Csa_023426 [Cucumis sativus] | [more] |
KAA0063675.1 | 3.8e-66 | 68.72 | TMV resistance protein N-like [Cucumis melo var. makuwa] >TYK18352.1 TMV resista... | [more] |
XP_038877735.1 | 4.7e-48 | 54.82 | disease resistance protein RPS6-like, partial [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |