PI0028673 (gene) Melon (PI 482460) v1

Overview
NamePI0028673
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionCACTA en-spm transposon protein
Locationchr12: 18165053 .. 18167233 (+)
RNA-Seq ExpressionPI0028673
SyntenyPI0028673
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTGCGAGGTAGACCATGAGTTTCGTGAGTTGGATATATCCCCTCACACGGGATCCTTGGTGGGTGAAACTTCAGGTTAGTTCCATGAGTTGGGGTGACACTTCATGTGAGTTCCTTGAGTTTTGTGAGTTGGTACTAATACCTTTTTTTCTCAGACGACTGCTCTTCATCCACTCGTAGGACACGCAAGCACTCACAAAACATTGAGTTGGAGAAATATGTAAACAAACATGGAAAAATTCCAATCTCTATCACACCGGTGCGGAGAAGCCAATTTCTCCACATGTTGTTTGGTTCAATAATACTATTGGTGTGATGATCAGAGATTGTTTTCCAATTTGGTATCGTACATATCCAGAGGTTCCATAGGAATTTATCGAGATGGCTAAGGGTGATTTGTTGGTAAGTTTACGAGTTTTCAGTATTTTACACTTAACCACATATATGGAAATTAACATAATCCATTTTTGTATGAGTATTTCGTACTTGATTTCTCAGATCCAACACTTAATAAATTTATCAAACGACAAATGTCACACTCGTTCAAAGAATACAGAGCGAATTTGCACAAATATTTTAAGAAATGTTGCGATTATGAGCGAGCACGTGTCAACCCGCCTACCAGATTGAAGAATTGCTTAGAAGATTGGAATATTTTGTGTGATCATTTTCTAAGTGAAGGATTTCAGGTGATTTACTTTCTTTAACACATCACTTTTTTATCACTTTTTTATAAGTAATTTACCTAATGTGTTATTTTTGTTGTTTGAACATAGGAGCAATCAAAGACTAACAAGCATAATAGAGAAAAACAACCATTCTATCACAGTAGCGGGTCAAAGTTGTTTATGTAGAGACAATCTGAGCTCAGTGAACGAGGTGAACCAGTGGGACGTGTGGACCTATTCAAAGAAACGTACTCCAATAAGAGTGGCCAGTTTGTGAATCAGGCAACTGAAGATGCACATGTAAGTAATGCGGTTTATTTTCTAGTTGTTTTGAGTGCATAACTTAACTATTTGTTTGCAAAACCAAATGGTAAAATTACTATCGACACCCACTCTAGAAGTTTCTCAACCACTATCAGGAGACGAAATATGCGAGACAGTTTTGGGTAGACGACCTAGTTACTCAAAAGGTCTTTGTTGGGGTCCTAAACCCGAGTAAAAAAGGAGTAGTAGTTCATCGAGTTCAGCGTCCCAAGAAATGCACGATAGAGAGGTAAGGAAACTAAGAGTCAACTTGGAGATGTCGCAATCAAAGATTAAAGAACTTGAAGAAGGCCAAAGATGTATGGCAGAGGAACATGCCAGAGAAATCGAAGAACAAAGAAGAATGTCAGAGATGCATGGCAGACAAATGGAAGAAATGAAAAAAATGATTGAAGAAATGACATGAGCACAAAGAGGACTGTGAACTTTAGGTATGTATTCTTCAAATAACTAATTGCGCAATACTTTACTAAATAGTTATGGTAGCTTTATTTCCAAATATTTGCATTCTGAGGATTGGTTCTGGCTATCTTGCAATTATGGTAGCCTTTAGTTGAGTGAATGATTCTGTTTAATATGTTATTGTTGTTCTTGATATATTGATGTTGAAGGTTGAATTATGAGAGGTGGGTACTCTTTTCTTGAATTGTTGTTGTTCTTTAGGGAGATCGTGAATTTTCTTAACATTGTTGCCTTGAGGGTGGGTGAACTTTGCTTAATTGCTAGGATGTGTTGGGGGTGGGTGAACTTTGCTTAATTACTAGAATATGTTAAGGGGTAGATTTTAGTTTCTTGAATTGTTGTTTTGGGGGTGGGTTGAAGGATGAATTGTATGATTAATATGTTTATTTGAGGGGTGAGTTGTTAATTGATTGATATGAGTCTATTAATACATGTTGAGGGATTGGTTTGAGGGGTGAGTTTGCTTTACTAGTTGAGTTGATAGGGTGAGTTGTGCATTTTTTTCTTGACTTTAGTTGAAGGGTGTTTCTTAACTTTTTGTTTACGGGTGAATGAATTTGCTTAACTTTAACTTATTTTGTAAAGTTGATCAATAGGGTTATATGGAATTTTTTGGTTAAAATTTTGGTTATTTCAAGTTTGTAACAATTATTTTACTTGATGTGATTGTAGGTAAAAGAGTTGTTCGAAGATGACGTCGGAAGATGGGTTTTGGAGAGATGA

mRNA sequence

ATGCACTGCGAGGTAGACCATGAGTTTCGTGAGTTGGATATATCCCCTCACACGGGATCCTTGGTGGGTGAAACTTCAGACGACTGCTCTTCATCCACTCGTAGGACACGCAAGCACTCACAAAACATTGAGTTGGAGAAATATGTAAACAAACATGGAAAAATTCCAATCTCTATCACACCGAGACAATCTGAGCTCAGTGAACGAGGTGAACCAGTGGGACGTGTGGACCTATTCAAAGAAACGTACTCCAATAAGAGTGGCCAGTTTGTGAATCAGGCAACTGAAGATGCACATGTAAAAGAGTTGTTCGAAGATGACGTCGGAAGATGGGTTTTGGAGAGATGA

Coding sequence (CDS)

ATGCACTGCGAGGTAGACCATGAGTTTCGTGAGTTGGATATATCCCCTCACACGGGATCCTTGGTGGGTGAAACTTCAGACGACTGCTCTTCATCCACTCGTAGGACACGCAAGCACTCACAAAACATTGAGTTGGAGAAATATGTAAACAAACATGGAAAAATTCCAATCTCTATCACACCGAGACAATCTGAGCTCAGTGAACGAGGTGAACCAGTGGGACGTGTGGACCTATTCAAAGAAACGTACTCCAATAAGAGTGGCCAGTTTGTGAATCAGGCAACTGAAGATGCACATGTAAAAGAGTTGTTCGAAGATGACGTCGGAAGATGGGTTTTGGAGAGATGA

Protein sequence

MHCEVDHEFRELDISPHTGSLVGETSDDCSSSTRRTRKHSQNIELEKYVNKHGKIPISITPRQSELSERGEPVGRVDLFKETYSNKSGQFVNQATEDAHVKELFEDDVGRWVLER
Homology
BLAST of PI0028673 vs. ExPASy TrEMBL
Match: A0A5D3BVT3 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G00010 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.3e-11
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 9  FRELDISPHTGSLVGETSDDCSSSTRRTRKHSQNIELEKYVNKHGKIPISIT 61
          F+EL+ISPHTGSLVG+TS+  S  TR+TR HS+N+ELEKY+ KHGKIPISIT
Sbjct: 37 FQELNISPHTGSLVGDTSNG-SGPTRKTRDHSRNMELEKYICKHGKIPISIT 87

BLAST of PI0028673 vs. ExPASy TrEMBL
Match: A0A5A7V0Y7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00540 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.8e-10
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 0

Query: 20  SLVGETSDDCS-SSTRRTRKHSQNIELEKYVNKHGKIPISITPRQSE------------- 79
           S V   SDD   + T R R++SQN+ELE+YV K+GKI I+I PR  +             
Sbjct: 55  SSVSNISDDSQPTPTPRRRQYSQNMELERYVQKNGKISITIAPRVKKPTSPHSIQFSNTI 114

Query: 80  ----LSERGEPVGRVDLFKETYSNKSGQFVNQATEDAH 100
                 ERG+PVG V+LF+ET++N+SGQF++    +AH
Sbjct: 115 GHELTEERGQPVGCVNLFRETHANRSGQFISHTAMNAH 152

BLAST of PI0028673 vs. ExPASy TrEMBL
Match: A0A5A7SLE3 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001900 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0

Query: 4   EVDHEFRELDISPHTGSLVGETSDDCSSSTRRTRKHSQNIELEKYVNKHGKI 56
           E D  F ELDISP+T S VG+TSDD S  T +T  HS+N+ELEKYV+KHGK+
Sbjct: 51  ESDDLFEELDISPYTESFVGDTSDD-SKPTHKTHGHSRNMELEKYVHKHGKV 101

BLAST of PI0028673 vs. ExPASy TrEMBL
Match: A0A5D3DYI9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00460 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.2e-06
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 38  KHSQNIELEKYVNKHGKIPISITPRQS------------ELSE-RGEPVGRVDLFKETYS 97
           +H +N+EL++YV ++GKIPISI   Q             EL+E RG P+ RV+LF ETY+
Sbjct: 4   EHLRNLELDRYVAQNGKIPISIDQGQDNSGAKSFLQGKHELAEQRGHPINRVELFMETYA 63

Query: 98  NKSGQFVNQATEDAH 100
            +SGQFV  A  DAH
Sbjct: 64  -RSGQFVLPAVADAH 77

BLAST of PI0028673 vs. ExPASy TrEMBL
Match: A0A5D3D3W6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001120 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.0e-05
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 0

Query: 15  SPHTGSLVGETSDDCSSSTRRTRKHSQNIELEKYVNKHGKIPISITP------------- 74
           S   G   G +S   + + RR R  S+ +ELE++V  +G+IP++I P             
Sbjct: 21  SSSVGDNTGSSSQQTTPTPRR-RAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAVRF 80

Query: 75  --------------RQSELSE-RGEPVGRVDLFKETYSNKSGQFVNQATEDAH 100
                         RQ EL+E RG+PV RV+LF+ET+  ++G FV+QA EDAH
Sbjct: 81  SQAIGVSGSKSFLQRQYELAERRGQPVDRVELFRETHV-RAGTFVSQAVEDAH 131

BLAST of PI0028673 vs. NCBI nr
Match: KAA0038006.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK02199.1 (R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 9  FRELDISPHTGSLVGETSDDCSSSTRRTRKHSQNIELEKYVNKHGKIPISIT 61
          F+EL+ISPHTGSLVG+TS+  S  TR+TR HS+N+ELEKY+ KHGKIPISIT
Sbjct: 37 FQELNISPHTGSLVGDTSNG-SGPTRKTRDHSRNMELEKYICKHGKIPISIT 87

BLAST of PI0028673 vs. NCBI nr
Match: KAA0060467.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK18552.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 9.8e-10
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 0

Query: 20  SLVGETSDDCS-SSTRRTRKHSQNIELEKYVNKHGKIPISITPRQSE------------- 79
           S V   SDD   + T R R++SQN+ELE+YV K+GKI I+I PR  +             
Sbjct: 55  SSVSNISDDSQPTPTPRRRQYSQNMELERYVQKNGKISITIAPRVKKPTSPHSIQFSNTI 114

Query: 80  ----LSERGEPVGRVDLFKETYSNKSGQFVNQATEDAH 100
                 ERG+PVG V+LF+ET++N+SGQF++    +AH
Sbjct: 115 GHELTEERGQPVGCVNLFRETHANRSGQFISHTAMNAH 152

BLAST of PI0028673 vs. NCBI nr
Match: KAA0031912.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK06695.1 (R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-07
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0

Query: 4   EVDHEFRELDISPHTGSLVGETSDDCSSSTRRTRKHSQNIELEKYVNKHGKI 56
           E D  F ELDISP+T S VG+TSDD S  T +T  HS+N+ELEKYV+KHGK+
Sbjct: 51  ESDDLFEELDISPYTESFVGDTSDD-SKPTHKTHGHSRNMELEKYVHKHGKV 101

BLAST of PI0028673 vs. NCBI nr
Match: KAA0066009.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK28957.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 8.6e-06
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 38  KHSQNIELEKYVNKHGKIPISITPRQS------------ELSE-RGEPVGRVDLFKETYS 97
           +H +N+EL++YV ++GKIPISI   Q             EL+E RG P+ RV+LF ETY+
Sbjct: 4   EHLRNLELDRYVAQNGKIPISIDQGQDNSGAKSFLQGKHELAEQRGHPINRVELFMETYA 63

Query: 98  NKSGQFVNQATEDAH 100
            +SGQFV  A  DAH
Sbjct: 64  -RSGQFVLPAVADAH 77

BLAST of PI0028673 vs. NCBI nr
Match: XP_031737881.1 (uncharacterized protein LOC116402552 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-05
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 0

Query: 59  ITPRQSELSERGEPVGRVDLFKETYSNKSGQFVNQATEDAH 100
           I P+     +R EPVGRV+LFKET++NKSGQFVNQA +D H
Sbjct: 15  ILPKYELSEQRDEPVGRVELFKETHANKSGQFVNQAAKDVH 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BVT37.3e-1173.08(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7V0Y74.8e-1042.86CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7SLE32.2e-0763.46(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DYI94.2e-0648.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3D3W66.0e-0536.28CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
KAA0038006.11.5e-1073.08(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK02199.1 (R)-mande... [more]
KAA0060467.19.8e-1042.86CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK18552.1 CACTA en-... [more]
KAA0031912.14.6e-0763.46(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK06695.1 (R)-mande... [more]
KAA0066009.18.6e-0648.00CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK28957.1 CACTA en-... [more]
XP_031737881.15.6e-0563.41uncharacterized protein LOC116402552 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028673.1PI0028673.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016829 lyase activity