Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAGAAGATGTCAGGATGTCACATCCAGGGTTCGCCGACAATAGACTATCGAATAAAAAACATGAAGAAAACGTTTCAGACCATCGCAAAAATGCGCAGACCGTCGTGTAATGGGTTTTGTTGGAACGATGAAGTTAAGTGCACCATCGCTGAGAATGAGTTGTTCGACAATTGGGTGAAGGTAAGTTATTCATTATGAAGGCAAGTTATACTATAAAAAAACTGACAATTTATTTAAAAACTTCAACAGTGTCATCCTACTGCCAAGGGCTTTCTAAACAAGTCATTTCCCCATTATGACAACATGTGCTACGTATTCGGGAAGATCGTGCGATGGGAGTACGTGCGGAGACATTCACCGATGTGAGGTCGAATGTGCTTGGAGGGTTCGAGGGATTTTCCACTGATTATGGGAACGATACGGAGATCCCTATGATGTACAATTAGGGACTAGACATGTCGCTTGATGATATCATAGACACACGACCTGGTCGCTCGAGTGAAGGTAGGAGTGGTTCAAGTAGATCGAAGAGGAAGCGGAGAGGCCCGACGATAGAGATTGTGGAAATTATTCGCAATGCAGTGCATTTCGCCAATGACCAGCTAAAGGCCATTGCAGAGTGGCCAAATTTACAACGTCAAGATAAGTGCGCCTCTCGTGCGTAA
mRNA sequence
ATGGCAGAGAAGATGTCAGGATGTCACATCCAGGGTTCGCCGACAATAGACTATCGAATAAAAAACATGAAGAAAACGTTTCAGACCATCGCAAAAATGCGCAGACCGTCGTGTAATGGGTTTTGTTGGAACGATGAAGTTAAGTGCACCATCGCTGAGAATGAGTTGTTCGACAATTGGGTGAAGGGACTAGACATGTCGCTTGATGATATCATAGACACACGACCTGGTCGCTCGAGTGAAGGTAGGAGTGGTTCAAGTAGATCGAAGAGGAAGCGGAGAGGCCCGACGATAGAGATTGTGGAAATTATTCGCAATGCAGTGCATTTCGCCAATGACCAGCTAAAGGCCATTGCAGAGTGGCCAAATTTACAACGTCAAGATAAGTGCGCCTCTCGTGCGTAA
Coding sequence (CDS)
ATGGCAGAGAAGATGTCAGGATGTCACATCCAGGGTTCGCCGACAATAGACTATCGAATAAAAAACATGAAGAAAACGTTTCAGACCATCGCAAAAATGCGCAGACCGTCGTGTAATGGGTTTTGTTGGAACGATGAAGTTAAGTGCACCATCGCTGAGAATGAGTTGTTCGACAATTGGGTGAAGGGACTAGACATGTCGCTTGATGATATCATAGACACACGACCTGGTCGCTCGAGTGAAGGTAGGAGTGGTTCAAGTAGATCGAAGAGGAAGCGGAGAGGCCCGACGATAGAGATTGTGGAAATTATTCGCAATGCAGTGCATTTCGCCAATGACCAGCTAAAGGCCATTGCAGAGTGGCCAAATTTACAACGTCAAGATAAGTGCGCCTCTCGTGCGTAA
Protein sequence
MAEKMSGCHIQGSPTIDYRIKNMKKTFQTIAKMRRPSCNGFCWNDEVKCTIAENELFDNWVKGLDMSLDDIIDTRPGRSSEGRSGSSRSKRKRRGPTIEIVEIIRNAVHFANDQLKAIAEWPNLQRQDKCASRA
Homology
BLAST of PI0028591 vs. ExPASy TrEMBL
Match:
E5GBS5 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 152.1 bits (383), Expect = 1.6e-33
Identity = 74/128 (57.81%), Postives = 97/128 (75.78%), Query Frame = 0
Query: 1 MAEKMSGCHIQGSPTIDYRIKNMKKTFQTIAKMRRPSCNGFCWNDEVKCTIAENELFDNW 60
MA+KMSG +IQ + TID IK M+KTF I+++R PSC+GF WNDE+ I E ++FDNW
Sbjct: 52 MAQKMSGPNIQAT-TIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNW 111
Query: 61 VKGLDMSLDDIIDTRPGRSSEGRSGSSRSKRKRRGPTIEIVEIIRNAVHFANDQLKAIAE 120
+KGL+MS D+ +D+R GRS +GR+ SSRSKRKR G IEI II+NA+ +ANDQL I +
Sbjct: 112 MKGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVD 171
Query: 121 WPNLQRQD 129
WP L+ QD
Sbjct: 172 WPILRNQD 178
BLAST of PI0028591 vs. ExPASy TrEMBL
Match:
A0A5D3BVH6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00320 PE=4 SV=1)
HSP 1 Score: 141.4 bits (355), Expect = 2.8e-30
Identity = 70/128 (54.69%), Postives = 93/128 (72.66%), Query Frame = 0
Query: 1 MAEKMSGCHIQGSPTIDYRIKNMKKTFQTIAKMRRPSCNGFCWNDEVKCTIAENELFDNW 60
MA+KMSG +IQ + TID IK M+KTF I+++R PSC+GF WNDE+ I E ++FDNW
Sbjct: 52 MAQKMSGPNIQAT-TIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNW 111
Query: 61 VKGLDMSLDDIIDTRPGRSSEGRSGSSRSKRKRRGPTIEIVEIIRNAVHFANDQLKAIAE 120
+KGL+MS D+ +D+R GRS +GR+ SSR KRKR G IE II+NA+ +AN QL I +
Sbjct: 112 MKGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVD 171
Query: 121 WPNLQRQD 129
W L+ QD
Sbjct: 172 WLILRNQD 178
BLAST of PI0028591 vs. ExPASy TrEMBL
Match:
A0A5A7V442 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005190 PE=4 SV=1)
HSP 1 Score: 141.4 bits (355), Expect = 2.8e-30
Identity = 70/128 (54.69%), Postives = 93/128 (72.66%), Query Frame = 0
Query: 1 MAEKMSGCHIQGSPTIDYRIKNMKKTFQTIAKMRRPSCNGFCWNDEVKCTIAENELFDNW 60
MA+KMSG +IQ + TID IK M+KTF I+++R PSC+GF WNDE+ I E ++FDNW
Sbjct: 217 MAQKMSGPNIQAT-TIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNW 276
Query: 61 VKGLDMSLDDIIDTRPGRSSEGRSGSSRSKRKRRGPTIEIVEIIRNAVHFANDQLKAIAE 120
+KGL+MS D+ +D+R GRS +GR+ SSR KRKR G IE II+NA+ +AN QL I +
Sbjct: 277 MKGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVD 336
Query: 121 WPNLQRQD 129
W L+ QD
Sbjct: 337 WLILRNQD 343
BLAST of PI0028591 vs. ExPASy TrEMBL
Match:
A0A5A7SXS6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00370 PE=4 SV=1)
HSP 1 Score: 131.0 bits (328), Expect = 3.8e-27
Identity = 70/154 (45.45%), Postives = 89/154 (57.79%), Query Frame = 0
Query: 1 MAEKMSGCHIQGSPTIDYRIKNMKKTFQTIAKMRRPSCNGFCWNDEVKCTIAENELFDNW 60
MAEK+ GC ++ + ID RIK +K+ FQ IA+MR P+C+GF WNDE KC IAE ELFDNW
Sbjct: 2 MAEKLPGCQVRVTTVIDCRIKTLKRLFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNW 61
Query: 61 V--------------------------------KGLDMSLDDIIDTRPGRSSEGRSGSSR 120
V +G+D+S DD+ +RP R+ EGR+GSSR
Sbjct: 62 VRSHPAAKGLLNKPFSYYDELTYIFDRDRVTGRRGIDLSQDDVRASRPSRALEGRTGSSR 121
Query: 121 SKRKRRGPTIEIVEIIRNAVHFANDQLKAIAEWP 123
SKRKR VE I A+ N+QL+ IAEWP
Sbjct: 122 SKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWP 155
BLAST of PI0028591 vs. ExPASy TrEMBL
Match:
A0A5A7UIZ2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00680 PE=4 SV=1)
HSP 1 Score: 130.2 bits (326), Expect = 6.5e-27
Identity = 70/160 (43.75%), Postives = 89/160 (55.62%), Query Frame = 0
Query: 1 MAEKMSGCHIQGSPTIDYRIKNMKKTFQTIAKMRRPSCNGFCWNDEVKCTIAENELFDNW 60
MAEK+ GC ++ + ID RIK +K+TFQ I +MR P+C+GF WNDE KC +AE ELFDNW
Sbjct: 52 MAEKLPGCQVRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW 111
Query: 61 VK--------------------------------------GLDMSLDDIIDTRPGRSSEG 120
V+ G+D+S DD+ +RP R+SEG
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFDRDRATGRFAETFADGVDISQDDVRASRPSRASEG 171
Query: 121 RSGSSRSKRKRRGPTIEIVEIIRNAVHFANDQLKAIAEWP 123
R+GSS SKRKR VE I A+ N+QLK IAEWP
Sbjct: 172 RTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWP 211
BLAST of PI0028591 vs. NCBI nr
Match:
ADN33917.1 (hypothetical protein [Cucumis melo subsp. melo])
HSP 1 Score: 152.1 bits (383), Expect = 3.3e-33
Identity = 74/128 (57.81%), Postives = 97/128 (75.78%), Query Frame = 0
Query: 1 MAEKMSGCHIQGSPTIDYRIKNMKKTFQTIAKMRRPSCNGFCWNDEVKCTIAENELFDNW 60
MA+KMSG +IQ + TID IK M+KTF I+++R PSC+GF WNDE+ I E ++FDNW
Sbjct: 52 MAQKMSGPNIQAT-TIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNW 111
Query: 61 VKGLDMSLDDIIDTRPGRSSEGRSGSSRSKRKRRGPTIEIVEIIRNAVHFANDQLKAIAE 120
+KGL+MS D+ +D+R GRS +GR+ SSRSKRKR G IEI II+NA+ +ANDQL I +
Sbjct: 112 MKGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVD 171
Query: 121 WPNLQRQD 129
WP L+ QD
Sbjct: 172 WPILRNQD 178
BLAST of PI0028591 vs. NCBI nr
Match:
KAA0060635.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 141.4 bits (355), Expect = 5.8e-30
Identity = 70/128 (54.69%), Postives = 93/128 (72.66%), Query Frame = 0
Query: 1 MAEKMSGCHIQGSPTIDYRIKNMKKTFQTIAKMRRPSCNGFCWNDEVKCTIAENELFDNW 60
MA+KMSG +IQ + TID IK M+KTF I+++R PSC+GF WNDE+ I E ++FDNW
Sbjct: 217 MAQKMSGPNIQAT-TIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNW 276
Query: 61 VKGLDMSLDDIIDTRPGRSSEGRSGSSRSKRKRRGPTIEIVEIIRNAVHFANDQLKAIAE 120
+KGL+MS D+ +D+R GRS +GR+ SSR KRKR G IE II+NA+ +AN QL I +
Sbjct: 277 MKGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVD 336
Query: 121 WPNLQRQD 129
W L+ QD
Sbjct: 337 WLILRNQD 343
BLAST of PI0028591 vs. NCBI nr
Match:
TYK02236.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 141.4 bits (355), Expect = 5.8e-30
Identity = 70/128 (54.69%), Postives = 93/128 (72.66%), Query Frame = 0
Query: 1 MAEKMSGCHIQGSPTIDYRIKNMKKTFQTIAKMRRPSCNGFCWNDEVKCTIAENELFDNW 60
MA+KMSG +IQ + TID IK M+KTF I+++R PSC+GF WNDE+ I E ++FDNW
Sbjct: 52 MAQKMSGPNIQAT-TIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNW 111
Query: 61 VKGLDMSLDDIIDTRPGRSSEGRSGSSRSKRKRRGPTIEIVEIIRNAVHFANDQLKAIAE 120
+KGL+MS D+ +D+R GRS +GR+ SSR KRKR G IE II+NA+ +AN QL I +
Sbjct: 112 MKGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVD 171
Query: 121 WPNLQRQD 129
W L+ QD
Sbjct: 172 WLILRNQD 178
BLAST of PI0028591 vs. NCBI nr
Match:
KAA0035408.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK25743.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 131.0 bits (328), Expect = 7.9e-27
Identity = 70/154 (45.45%), Postives = 89/154 (57.79%), Query Frame = 0
Query: 1 MAEKMSGCHIQGSPTIDYRIKNMKKTFQTIAKMRRPSCNGFCWNDEVKCTIAENELFDNW 60
MAEK+ GC ++ + ID RIK +K+ FQ IA+MR P+C+GF WNDE KC IAE ELFDNW
Sbjct: 2 MAEKLPGCQVRVTTVIDCRIKTLKRLFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNW 61
Query: 61 V--------------------------------KGLDMSLDDIIDTRPGRSSEGRSGSSR 120
V +G+D+S DD+ +RP R+ EGR+GSSR
Sbjct: 62 VRSHPAAKGLLNKPFSYYDELTYIFDRDRVTGRRGIDLSQDDVRASRPSRALEGRTGSSR 121
Query: 121 SKRKRRGPTIEIVEIIRNAVHFANDQLKAIAEWP 123
SKRKR VE I A+ N+QL+ IAEWP
Sbjct: 122 SKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWP 155
BLAST of PI0028591 vs. NCBI nr
Match:
KAA0053511.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 70/160 (43.75%), Postives = 89/160 (55.62%), Query Frame = 0
Query: 1 MAEKMSGCHIQGSPTIDYRIKNMKKTFQTIAKMRRPSCNGFCWNDEVKCTIAENELFDNW 60
MAEK+ GC ++ + ID RIK +K+TFQ I +MR P+C+GF WNDE KC +AE ELFDNW
Sbjct: 52 MAEKLPGCQVRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW 111
Query: 61 VK--------------------------------------GLDMSLDDIIDTRPGRSSEG 120
V+ G+D+S DD+ +RP R+SEG
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFDRDRATGRFAETFADGVDISQDDVRASRPSRASEG 171
Query: 121 RSGSSRSKRKRRGPTIEIVEIIRNAVHFANDQLKAIAEWP 123
R+GSS SKRKR VE I A+ N+QLK IAEWP
Sbjct: 172 RTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWP 211
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| E5GBS5 | 1.6e-33 | 57.81 | Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
| A0A5D3BVH6 | 2.8e-30 | 54.69 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7V442 | 2.8e-30 | 54.69 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7SXS6 | 3.8e-27 | 45.45 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UIZ2 | 6.5e-27 | 43.75 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| ADN33917.1 | 3.3e-33 | 57.81 | hypothetical protein [Cucumis melo subsp. melo] | [more] |
| KAA0060635.1 | 5.8e-30 | 54.69 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK02236.1 | 5.8e-30 | 54.69 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0035408.1 | 7.9e-27 | 45.45 | retrotransposon protein [Cucumis melo var. makuwa] >TYK25743.1 retrotransposon p... | [more] |
| KAA0053511.1 | 1.3e-26 | 43.75 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
