PI0028531 (gene) Melon (PI 482460) v1

Overview
NamePI0028531
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionProtein NRT1/ PTR FAMILY 4.6-like
Locationchr02: 23838466 .. 23839527 (-)
RNA-Seq ExpressionPI0028531
SyntenyPI0028531
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAACAATGTCCACTCGTTTGATTGTTTGCCTTCAGAAAGATGACTTGCTCCATCCGGCAATCACCAGCAAACGAGGATCCTTACAATTTACACTTAACATTTCAGCCCCCATCTGAAGAACACGACCCAGCCATTTTGGAAAAGTTGCCATCGATAAGGATTGATGCCCACTCACATTATACAAGACGGCAAGATGATGGGTCATTGCCCTTTTTGTGTTTTATGAAATTCCCCGGTGGGTTTTTGGCTTTTTCCCCTACCCCACCTCCAGGGTGCGGTGCTGAGCCCTCAAGACACTTTGAAAAAATGAAAAAAAGGTAGGTCCTTCAATTCAATTTTCATATCTAATTTAATCAAACCCCACTCTTCCCTCATTCTCATCTCAATCCCATCCCAGATATTATCCATTTCCATTCCTTCCTTTACTTATCATTTTCCTATTCCAACTTGTCTATTGATTCACTATTCTCTTGTTCTAATGTCTTCTATACCATTCACGTACTTTTCATCTTAATGTGGGTTGTTTTCTTATATTTTGTTTTCAGCATTTTAAATTATAATGGATATATATATGGTTGATTGATCCTATCTCTGCTTCTTTTATATGGCATAGAAGTTTGTAGTCTCCTAATTTGTCCTTCAGATTTGTTACTTCCCTTTCAGCTGTGATGGTGATCTTGTCGGGAATGCAACTGAAGTCACACATTGGCTCAATAAGGAGAGGGTGGTGCAATCATTTCTATTGGTGTGAGACATTTTGGGGGAAAATAAAAGTAAAACCATGTAGGCTTGTTGGCTATTGTAATTTGCAAAATTAATCATACATTGGCTAGATAAGAGAAATATCATAAGTATATAAGTGAATGACAAATGTCTTTGTTGGCATGAAACCTTTGGTGATTCCAAAAACAAAGTCGTGGGCTTATGTTCAAAATGGATGTTACCATATTATTATGATTGTATGTGGAAGATCGTTGTAACTAACATTAATGTCTAAAGTGAACAATATCATTTCATTATGGAGATATGTGAGGGACCTTTAGATATAGCTTTTCGATTTC

mRNA sequence

CCAACAATGTCCACTCGTTTGATTGTTTGCCTTCAGAAAGATGACTTGCTCCATCCGGCAATCACCAGCAAACGAGGATCCTTACAATTTACACTTAACATTTCAGCCCCCATCTGAAGAACACGACCCAGCCATTTTGGAAAAGTTGCCATCGATAAGGATTGATGCCCACTCACATTATACAAGACGGCAAGATGATGGGTCATTGCCCTTTTTGTGTTTTATGAAATTCCCCGGTGGGTTTTTGGCTTTTTCCCCTACCCCACCTCCAGGGTGCGGTGCTGAGCCCTCAAGACACTTTGAAAAAATGAAAAAAAGATTTGTTACTTCCCTTTCAGCTGTGATGGTGATCTTGTCGGGAATGCAACTGAAGTCACACATTGGCTCAATAAGGAGAGGGTGGTGCAATCATTTCTATTGGTGTGAGACATTTTGGGGGAAAATAAAAGTAAAACCATGTAGGCTTGTTGGCTATTGTAATTTGCAAAATTAATCATACATTGGCTAGATAAGAGAAATATCATAAGTATATAAGTGAATGACAAATGTCTTTGTTGGCATGAAACCTTTGGTGATTCCAAAAACAAAGTCGTGGGCTTATGTTCAAAATGGATGTTACCATATTATTATGATTGTATGTGGAAGATCGTTGTAACTAACATTAATGTCTAAAGTGAACAATATCATTTCATTATGGAGATATGTGAGGGACCTTTAGATATAGCTTTTCGATTTC

Coding sequence (CDS)

ATGACTTGCTCCATCCGGCAATCACCAGCAAACGAGGATCCTTACAATTTACACTTAACATTTCAGCCCCCATCTGAAGAACACGACCCAGCCATTTTGGAAAAGTTGCCATCGATAAGGATTGATGCCCACTCACATTATACAAGACGGCAAGATGATGGGTCATTGCCCTTTTTGTGTTTTATGAAATTCCCCGGTGGGTTTTTGGCTTTTTCCCCTACCCCACCTCCAGGGTGCGGTGCTGAGCCCTCAAGACACTTTGAAAAAATGAAAAAAAGATTTGTTACTTCCCTTTCAGCTGTGATGGTGATCTTGTCGGGAATGCAACTGAAGTCACACATTGGCTCAATAAGGAGAGGGTGGTGCAATCATTTCTATTGGTGTGAGACATTTTGGGGGAAAATAAAAGTAAAACCATGTAGGCTTGTTGGCTATTGTAATTTGCAAAATTAA

Protein sequence

MTCSIRQSPANEDPYNLHLTFQPPSEEHDPAILEKLPSIRIDAHSHYTRRQDDGSLPFLCFMKFPGGFLAFSPTPPPGCGAEPSRHFEKMKKRFVTSLSAVMVILSGMQLKSHIGSIRRGWCNHFYWCETFWGKIKVKPCRLVGYCNLQN
Homology
[Close]
BLAST of PI0028531 vs. ExPASy TrEMBL
Match: A0A5D3BH75 (Protein NRT1/ PTR FAMILY 4.6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002360 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.8e-07
Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 0 

Query: 54 GSLPFLCFMKFPGGFLAFSPTPPPGCGAEPSRHFEKMKK 93
          G  PF   MKF  GFLAFS TPPPGCGAE SRHFEKMK+
Sbjct: 13 GHCPFYVLMKFLSGFLAFSTTPPPGCGAESSRHFEKMKQ 51

[Close]
BLAST of PI0028531 vs. NCBI nr
Match: TYJ98613.1 (protein NRT1/ PTR FAMILY 4.6-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-07
Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 0 

Query: 54 GSLPFLCFMKFPGGFLAFSPTPPPGCGAEPSRHFEKMKK 93
          G  PF   MKF  GFLAFS TPPPGCGAE SRHFEKMK+
Sbjct: 13 GHCPFYVLMKFLSGFLAFSTTPPPGCGAESSRHFEKMKQ 51

The following BLAST results are available for this feature:
BLAST of PI0028531 vs.
Match NameE-valueIdentityDescription
BLAST of PI0028531 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BH753.8e-0774.36Protein NRT1/ PTR FAMILY 4.6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of PI0028531 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ98613.17.8e-0774.36protein NRT1/ PTR FAMILY 4.6-like [Cucumis melo var. makuwa][more]
BLAST of PI0028531 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028531.1PI0028531.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane