PI0028308 (gene) Melon (PI 482460) v1

Overview


Name	PI0028308
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Arabinogalactan protein 22, putative
Location	chr05: 818308 .. 819219 (+)
RNA-Seq Expression	PI0028308
Synteny	PI0028308

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCACCTTCTCTGTATTCAATAGAGGATAAATATTTTCTAAATTTTCAGCAATTTTTCGAGTCGATTCACTAAACATGAGTTCGTTGAAGCTCACTGCCGTTCCGATCGTCGGATTCTTGTTCTTGATTATTCTTCAATTGGCTTACGGCCACTCCCACGATATTTCACCGGCCGCGGGGGGCCCTTCTAACGACGGTGAGTTCCTGGCTGTATTACGATTTCGTACATGTGGTTTGATTTCGTCGCTGTGATTTCATCTAATTTCTGTATTTTGAATTTAATTCTTCATTCTAAATTCTGTAATTTAAAGTGTTTAATTGTGAAGATAAGTTTGAGAATCACTTGATTAGTTTTTATTTGATTTTTTTAGTTTAGTTTTGTACTTTAGTTCAAATTATCTCAATAATTTTGTCTGCTATATGTTTTTAACATTTAAAACTACAGTTTTCAAAGACAACTTCATATATTTTGAATCATTTTTAATGTATTTTAATTATTTCAAAATGACCTACGGATTAGAAATTATCATGTTTTAGGAATATTTTTCAATTCAATTTTTTTCACTCACATCAATTTTATGTTTAAATTTATATTTAAAAATCAATGTTTGTATTAATAAAATTGATTTAAAAATTGTTGAAAGTCCTAATATTTGTTAATTGTTGTTGCAGGAGCTGCAATTGACCAAGGGGTTGCGTACGTTCTTCTTCTGGTTGCTCTGGCCATTACTTACATCATCCATTAATAATTTTTTATATTAATCAAATGATTTTGGGTTCGATATGTAATTTACCATTGTTATTATTATTATTTGTAGTTTTTCCCCCTTTATTGGTGAAGAAATTGCGTTGGGAATTTGAGAATTCATTATTATTTTTTTCAATTATTGAAATACAATTCATCATTCATTA

mRNA sequence

TTCACCTTCTCTGTATTCAATAGAGGATAAATATTTTCTAAATTTTCAGCAATTTTTCGAGTCGATTCACTAAACATGAGTTCGTTGAAGCTCACTGCCGTTCCGATCGTCGGATTCTTGTTCTTGATTATTCTTCAATTGGCTTACGGCCACTCCCACGATATTTCACCGGCCGCGGGGGGCCCTTCTAACGACGGAGCTGCAATTGACCAAGGGGTTGCGTACGTTCTTCTTCTGGTTGCTCTGGCCATTACTTACATCATCCATTAATAATTTTTTATATTAATCAAATGATTTTGGGTTCGATATGTAATTTACCATTGTTATTATTATTATTTGTAGTTTTTCCCCCTTTATTGGTGAAGAAATTGCGTTGGGAATTTGAGAATTCATTATTATTTTTTTCAATTATTGAAATACAATTCATCATTCATTA

Coding sequence (CDS)

ATGAGTTCGTTGAAGCTCACTGCCGTTCCGATCGTCGGATTCTTGTTCTTGATTATTCTTCAATTGGCTTACGGCCACTCCCACGATATTTCACCGGCCGCGGGGGGCCCTTCTAACGACGGAGCTGCAATTGACCAAGGGGTTGCGTACGTTCTTCTTCTGGTTGCTCTGGCCATTACTTACATCATCCATTAA

Protein sequence

MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

Homology

[Close]

BLAST of PI0028308 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.0e-08
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAIT 60
          M+SLK     +  F+ + ++ L    SH  SPA   P++DG +IDQG+AYVL++VALA+T
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAP-APTSDGTSIDQGIAYVLMMVALALT 60

Query: 61 YIIH 65
          Y IH
Sbjct: 61 YFIH 63

[Close]

BLAST of PI0028308 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-07
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 11 IVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH 65
          IV  +F I+L +A+  S   +PA   P++DG  IDQG+AYVL+LVAL +TY+IH
Sbjct: 13 IVSIIFAILLPMAHAQSAAPAPA---PTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of PI0028308 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.9e-06
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 6  LTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH 65
          +T   +  F+F +IL LA   S   +PA   P++DG +IDQG+AY+L++VAL +TY+IH
Sbjct: 7  VTGFALFSFVFAVILSLAGAQSLAPAPA---PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of PI0028308 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-04
Identity = 24/59 (40.68%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 6  LTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH 65
          +  + +  F+F +I   A   S  ++PA   P++DG +IDQG+AY+L++VAL +TY+IH
Sbjct: 7  VAVIALFAFVFAVISPFAGAQS--LAPAP-SPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of PI0028308 vs. ExPASy TrEMBL
Match: A0A0A0LIU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAIT 60
          MSSLKLTAVPIVGFLFLI+LQLA+GHSHDISPAA GPSNDGAAIDQG+AYVLLL+ALA+T
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAA-GPSNDGAAIDQGIAYVLLLLALAVT 60

Query: 61 YIIH 65
          YI+H
Sbjct: 61 YIVH 63

[Close]

BLAST of PI0028308 vs. ExPASy TrEMBL
Match: A0A5A7V7C0 (Putative Arabinogalactan protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00220 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.4e-21
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAIT 60
          MSSLKLTAVP VGFLFLIILQLA+GHSHDISPA  GPSNDGAAIDQG+AYVLLL+ALAIT
Sbjct: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAE-GPSNDGAAIDQGIAYVLLLLALAIT 60

Query: 61 YIIH 65
          YIIH
Sbjct: 61 YIIH 63

[Close]

BLAST of PI0028308 vs. ExPASy TrEMBL
Match: A0A067KBQ4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07227 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.7e-12
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAIT 60
          MS + L A+PI+GF+FL +LQL +G +   SPAA GPS+DG  IDQG+AYVL+LVALA+T
Sbjct: 1  MSPMNLYALPIIGFMFLALLQLGHGQAIAPSPAAEGPSSDGNTIDQGIAYVLMLVALAVT 60

Query: 61 YIIH 65
          Y+ H
Sbjct: 61 YLFH 64

[Close]

BLAST of PI0028308 vs. ExPASy TrEMBL
Match: A0A6N2KPV9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113772 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.3e-12
Identity = 36/64 (56.25%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1   MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAIT 60
           M+S++L A+PI+GF+FL +L+  +G     SP A GPSNDG  IDQG+AY+LL++ALAIT
Sbjct: 38  MNSMRLYALPIIGFMFLALLEFGFGQGMAPSPEAEGPSNDGKTIDQGIAYILLMLALAIT 97

Query: 61  YIIH 65
           Y++H
Sbjct: 98  YLLH 101

[Close]

BLAST of PI0028308 vs. ExPASy TrEMBL
Match: A0A2C9W3S5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019400 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 37/64 (57.81%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAIT 60
          MS +KL  +PI+G +FL ++QL+YG     SPA  GPS+DG AIDQG+A++L+LVALA+T
Sbjct: 1  MSPMKLFGLPIIGLVFLALMQLSYGQGVAPSPAPEGPSSDGNAIDQGIAFILMLVALAVT 60

Query: 61 YIIH 65
          Y+IH
Sbjct: 61 YLIH 64

[Close]

BLAST of PI0028308 vs. NCBI nr
Match: KGN60622.1 (hypothetical protein Csa_019490 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 3.1e-21
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAIT 60
          MSSLKLTAVPIVGFLFLI+LQLA+GHSHDISPAA GPSNDGAAIDQG+AYVLLL+ALA+T
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAA-GPSNDGAAIDQGIAYVLLLLALAVT 60

Query: 61 YIIH 65
          YI+H
Sbjct: 61 YIVH 63

[Close]

BLAST of PI0028308 vs. NCBI nr
Match: KAA0061559.1 (putative Arabinogalactan protein 22 [Cucumis melo var. makuwa] >TYK10713.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAIT 60
          MSSLKLTAVP VGFLFLIILQLA+GHSHDISPA  GPSNDGAAIDQG+AYVLLL+ALAIT
Sbjct: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAE-GPSNDGAAIDQGIAYVLLLLALAIT 60

Query: 61 YIIH 65
          YIIH
Sbjct: 61 YIIH 63

[Close]

BLAST of PI0028308 vs. NCBI nr
Match: KDP33656.1 (hypothetical protein JCGZ_07227 [Jatropha curcas])

HSP 1 Score: 80.1 bits (196), Expect = 7.6e-12
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAIT 60
          MS + L A+PI+GF+FL +LQL +G +   SPAA GPS+DG  IDQG+AYVL+LVALA+T
Sbjct: 1  MSPMNLYALPIIGFMFLALLQLGHGQAIAPSPAAEGPSSDGNTIDQGIAYVLMLVALAVT 60

Query: 61 YIIH 65
          Y+ H
Sbjct: 61 YLFH 64

[Close]

BLAST of PI0028308 vs. NCBI nr
Match: KAF9662510.1 (hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii])

HSP 1 Score: 80.1 bits (196), Expect = 7.6e-12
Identity = 37/64 (57.81%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAIT 60
          M+S++L A+PI+GF+FL +L+  +G     SPA  GPSNDG  IDQG+AYVLL++ALAIT
Sbjct: 1  MNSMRLYALPIIGFMFLALLEFGFGQGMASSPAPEGPSNDGKTIDQGIAYVLLMLALAIT 60

Query: 61 YIIH 65
          Y++H
Sbjct: 61 YLLH 64

[Close]

BLAST of PI0028308 vs. NCBI nr
Match: KAG5225627.1 (arabinogalactan peptide [Salix suchowensis])

HSP 1 Score: 78.6 bits (192), Expect = 2.2e-11
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAIT 60
          M+S++L A+PI+GF+FL +L+  +G     SP A GPSNDG  IDQG+AY+LL++ALAIT
Sbjct: 1  MNSMRLYALPIIGFMFLALLEFGFGQGMAPSPEAEGPSNDGKTIDQGIAYILLMLALAIT 60

Query: 61 YIIH 65
          Y+ H
Sbjct: 61 YLFH 64

[Close]

BLAST of PI0028308 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 57.4 bits (137), Expect = 4.9e-09
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAIT 60
          M+SLK     +  F+ + ++ L    SH  SPA   P++DG +IDQG+AYVL++VALA+T
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAP-APTSDGTSIDQGIAYVLMMVALALT 60

Query: 61 YIIH 65
          Y IH
Sbjct: 61 YFIH 63

[Close]

BLAST of PI0028308 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-08
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 11 IVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH 65
          IV  +F I+L +A+  S   +PA   P++DG  IDQG+AYVL+LVAL +TY+IH
Sbjct: 13 IVSIIFAILLPMAHAQSAAPAPA---PTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of PI0028308 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 52.0 bits (123), Expect = 2.1e-07
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 6  LTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH 65
          +T   +  F+F +IL LA   S   +PA   P++DG +IDQG+AY+L++VAL +TY+IH
Sbjct: 7  VTGFALFSFVFAVILSLAGAQSLAPAPA---PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of PI0028308 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 46.2 bits (108), Expect = 1.1e-05
Identity = 24/59 (40.68%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 6  LTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH 65
          +  + +  F+F +I   A   S  ++PA   P++DG +IDQG+AY+L++VAL +TY+IH
Sbjct: 7  VAVIALFAFVFAVISPFAGAQS--LAPAP-SPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

The following BLAST results are available for this feature:

BLAST of PI0028308 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK16	7.0e-08	46.88	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]
Q8L9T8	5.9e-07	51.85	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
O82337	2.9e-06	45.76	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	1.6e-04	40.68	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]

BLAST of PI0028308 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIU0	1.5e-21	89.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1	[more]
A0A5A7V7C0	7.4e-21	90.63	Putative Arabinogalactan protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A067KBQ4	3.7e-12	60.94	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07227 PE=4 SV=1	[more]
A0A6N2KPV9	6.3e-12	56.25	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113772 PE=4 SV=...	[more]
A0A2C9W3S5	1.4e-11	57.81	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019400 PE=4 SV=...	[more]

BLAST of PI0028308 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60622.1	3.1e-21	89.06	hypothetical protein Csa_019490 [Cucumis sativus]	[more]
KAA0061559.1	1.5e-20	90.63	putative Arabinogalactan protein 22 [Cucumis melo var. makuwa] >TYK10713.1 putat...	[more]
KDP33656.1	7.6e-12	60.94	hypothetical protein JCGZ_07227 [Jatropha curcas]	[more]
KAF9662510.1	7.6e-12	57.81	hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii]	[more]
KAG5225627.1	2.2e-11	56.25	arabinogalactan peptide [Salix suchowensis]	[more]

BLAST of PI0028308 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53250.1	4.9e-09	46.88	arabinogalactan protein 22	[more]
AT5G24105.1	4.2e-08	51.85	arabinogalactan protein 41	[more]
AT2G46330.1	2.1e-07	45.76	arabinogalactan protein 16	[more]
AT3G61640.1	1.1e-05	40.68	arabinogalactan protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 31..64 e-value: 3.7E-17 score: 61.9
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 2..64
None	No IPR available	PANTHER	PTHR33374:SF7	ARABINOGALACTAN PEPTIDE 22	coord: 2..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028308.1	PI0028308.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane