PI0028280 (gene) Melon (PI 482460) v1

Overview
NamePI0028280
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr01: 1874354 .. 1874581 (+)
RNA-Seq ExpressionPI0028280
SyntenyPI0028280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCTCGCAAGTCAATTAACTTTGGTCCATGGGGGTCATTACCAAGAGACAGAAGATAACATGCTGCAAAGTTGCTGGACGTCGCCGAAGTGGAAGACAGGCCGGCGGCTGGAGAAAGTTAGGAAAAGAGGGTGCGAGGGCGTCCGCCTTCACGAGGAAGAAGGTGATGGAACATACAAAATTCGTAAAAAACCATTTTCCGATTGCTTGTTAACCCAAAATTGA

mRNA sequence

ATGGTTCTCGCAAGTCAATTAACTTTGGTCCATGGGGGTCATTACCAAGAGACAGAAGATAACATGCTGCAAAGTTGCTGGACGTCGCCGAAGTGGAAGACAGGCCGGCGGCTGGAGAAAGTTAGGAAAAGAGGGTGCGAGGGCGTCCGCCTTCACGAGGAAGAAGGTGATGGAACATACAAAATTCGTAAAAAACCATTTTCCGATTGCTTGTTAACCCAAAATTGA

Coding sequence (CDS)

ATGGTTCTCGCAAGTCAATTAACTTTGGTCCATGGGGGTCATTACCAAGAGACAGAAGATAACATGCTGCAAAGTTGCTGGACGTCGCCGAAGTGGAAGACAGGCCGGCGGCTGGAGAAAGTTAGGAAAAGAGGGTGCGAGGGCGTCCGCCTTCACGAGGAAGAAGGTGATGGAACATACAAAATTCGTAAAAAACCATTTTCCGATTGCTTGTTAACCCAAAATTGA

Protein sequence

MVLASQLTLVHGGHYQETEDNMLQSCWTSPKWKTGRRLEKVRKRGCEGVRLHEEEGDGTYKIRKKPFSDCLLTQN
Homology
[Close]
BLAST of PI0028280 vs. ExPASy TrEMBL
Match: A0A5A7SL79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002440 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.3e-20
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MVLASQLTLVHGGHYQETEDNMLQSCWTSPKWKTGRRLEKVRKRGCEGVRLHEEE 56
          MVLASQLTLVH GHYQET+DN+LQSCWTSPKWKTGRRLEKV +R CEGVR+HEEE
Sbjct: 11 MVLASQLTLVHWGHYQETDDNILQSCWTSPKWKTGRRLEKVNERVCEGVRVHEEE 65

[Close]
BLAST of PI0028280 vs. ExPASy TrEMBL
Match: A0A0A0K404 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062850 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.3e-15
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 13 GHYQETEDNMLQSCWTSPKWKTGRRLEKVRKRGCEGVRLHEEE 56
          GHYQETEDN+LQSCWTSPKWKTGRRLEKV +R CEGVR+HEEE
Sbjct: 9  GHYQETEDNILQSCWTSPKWKTGRRLEKVNERECEGVRVHEEE 51

[Close]
BLAST of PI0028280 vs. NCBI nr
Match: KAA0031480.1 (hypothetical protein E6C27_scaffold139G002410 [Cucumis melo var. makuwa] >TYK06933.1 hypothetical protein E5676_scaffold13G002440 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 8.9e-20
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MVLASQLTLVHGGHYQETEDNMLQSCWTSPKWKTGRRLEKVRKRGCEGVRLHEEE 56
          MVLASQLTLVH GHYQET+DN+LQSCWTSPKWKTGRRLEKV +R CEGVR+HEEE
Sbjct: 11 MVLASQLTLVHWGHYQETDDNILQSCWTSPKWKTGRRLEKVNERVCEGVRVHEEE 65

[Close]
BLAST of PI0028280 vs. NCBI nr
Match: KGN43719.1 (hypothetical protein Csa_017319 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-14
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 13 GHYQETEDNMLQSCWTSPKWKTGRRLEKVRKRGCEGVRLHEEE 56
          GHYQETEDN+LQSCWTSPKWKTGRRLEKV +R CEGVR+HEEE
Sbjct: 9  GHYQETEDNILQSCWTSPKWKTGRRLEKVNERECEGVRVHEEE 51

The following BLAST results are available for this feature:
BLAST of PI0028280 vs.
Match NameE-valueIdentityDescription
BLAST of PI0028280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SL794.3e-2087.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K4049.3e-1588.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062850 PE=4 SV=1[more]
BLAST of PI0028280 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031480.18.9e-2087.27hypothetical protein E6C27_scaffold139G002410 [Cucumis melo var. makuwa] >TYK069... [more]
KGN43719.11.9e-1488.37hypothetical protein Csa_017319 [Cucumis sativus][more]
BLAST of PI0028280 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028280.1PI0028280.1mRNA