PI0028212 (gene) Melon (PI 482460) v1

Overview
NamePI0028212
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Locationchr11: 15686751 .. 15691848 (-)
RNA-Seq ExpressionPI0028212
SyntenyPI0028212
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCAGAAGGCGATGAAGAGCCCATCACCGCGAAGAACGTCTTTAAACATTTCAAGATAGAGAAGAGGCTCTATCCCGCGAGAGGCGTTCTGCCAGCCTTCATCTCCACACCCATTCGCGCGTTCAAGTGGAAAAAGTTTTTCGAAAGGGTGACGGAGTTAAGGCCGGACGTAGTCAAGCTGTTTTACAAAGGGTTTATTGATCACGATGGTGACTACGCGGTGGTGAGGCAAAGAAGAGTCCACTTTCGGGCTGCAGCTATCAACGCGTTCTTCGAGCTGGAGAACAACGAAGTGGGGCAAATTATTTTCAAGAACCCCACTTCGCAAGATAAGGAAGACGCGTTGAAGAGGATCGCATGGCTTGGGACAAAATGGGATATAACGCCAACCGGGAAGTACCAGCTCTTCGCGCATAATTTGAACACCGAAGCAAGCGTCTGGTACTTCTTCGTGAAGAAGAAAATCATGCCATCACGCCACGACAGCACTATCGCCTGGTAAGCACACACTTCACTTAGCTGCATTGATAGAAATTCCCTGTGTTCGACCCTAGATCACCCCAGGAAACCTCTTGCTCCGCTTATACTTGGGCGAACAAGAGGAAAACTTGTGCGATAACAATTCACGATCGCCAAATCAACATGTTCACCATCGCGTATTTCTTATTCGCGTGGTTACTTTGCGATCCACATGACTAATCCATAATCCATAACTCAACTTCATTCCATTTTCTACCCATCATTCATCTTTCATCCATCCATATACCACATAATAAGAGTCAGAGTCTATAAACTCACGATATAAAATAATCAATCAGCTTTCGATAGGAACACGATTGATGCAGCAGCGGGAGGAGCTCTAGGCAACAAAACCCCCACTGAGGCAAGAGAGCTCATCTCTAGAATGGCGGAGAACTCTCAAAGTTTTGGGAATAGAGGATCGGAACTTGACAATTCTCTAACAAAAGAGGTAAGTGAATTAAAATCTCAAATGTTGAATATGACAACTCTTCTTACTTTTTTGTGCAAGGTGGCCCTCTCAAAGTAACCAAGTGTGGAATTTCTGGCTTGGTTGGTCATCCCAATGATAAATGCCCCGACTTGATTTAAGATGTAAATGTCACTCGTAAGTACGACCCCCACGATAATATATACAATTCTTGATGGAGAGACAATCCAAACTTGAGTTGGGGAAATGACAACCAAAAGCCCACCCAAGCAACATCCTCTTCTTCGAACCAAGGTATGAATCTTAAAGATATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAACGACTCAACTTACTACCGTCATAAGCAAGTTGGAAGTAAAAGGCAAGCTTCTGCCCAACCGGACCATGCAAATGTGAGTGTCATCTCACTAAGAAGTGGTAAGATTTTTGACACCCTTTCTAGTGAAGAAAAAAAGGTAACTCCCAATCCTATCCTTCTTGAAAATAAGAAAAGTGAGTATAAGGAAGAAAAAGTTGAAACAATTCCTTTACCATCTAATTCTAAGAAAGACAAACTTCCTCTTAATGATTTTACTCCTTATGTGCCTAAACCTTCTTTTCCTTCTAGGTTCGCTCCAAAGAAGAAGGAAACACCCAAGGAAGAAGAACTTTTGGAGATGTTTAGAAAGGTGCAAACCGACTTGCCCCTATTAGATGCAATCCAACAAGTGTCAAGGTATGCAAAGTTTCTAAAGGAGTAGTGTACCAACAAGAGGAAAACAAAAGAAAAAGTCATGGTAAGTCACAATGTTTCAACTCTTTTGAAAAACAATATCCCGAAAAAATACAATGATCCAGATATGTTTTCTCTCCTTTGTGTAATAGGCAATAGACTTATTTCTCATGCAATGCTTGACTTAGGAGCATCCATAAAATTTTTGTGCAGAATATGAAACTAGACTTCGATACGAGTCCAAGCCACTAAAATCACCTAAATTAGAGTTCTAACGAAGAAAATCGGGCAAATTAAAGATCAAGGGAAAAATGGTAATATTTCGAAAAAAGTTCAGATGTTTTCGCATGCGAAGTCCCATTCCCAAATTTTGCGTTCAGGCTCCACGCCTCTCATCACGCCTTTCATCCCCCCCCCCCCCCCCCCCGCGTGCCTCAACCCGCGTCCACTTCGTGCATTTCATTCCACGTTTTGGCTGGCGTCCGCCATTCCGCCTTCAGCTCGCGTCCTGCCCACATCTGCCTTCATCCGCGTTTTGCCTGCAAGCTCCTTTCCGCCTCTTTTTGCCTCGCGAACTTCATTTCACCAATTTCGACCCACAACCCACAGCCCAATTTAACAAAATAACTGCTAATTAGCAATTATTTATCATAACTTCCATCATTTTCCTATAAATACCATCATTTTCTCACTAATTCTCAAGAAGAAATCCATAATTTCTCTCCAAATTCACTAATTGCTCCCAAATTCTCTCCAAATTCTCTCCAATTTTCCCATTAGTTCTACCATTTCTTTTCCCAAATTAAACTCATCCACTCATCCACCAATGGAGGGCTAAGCAATTTGAGGTAATTGGGCTTAGGATTAGTCTTTCTTTGAGAGTCTTTTCTCTTTTATTCTTTTGTAATAATTAGTTTAGTTCTAATTCAATTTTTAATTCATGTAAATTGTTAGATTCTCTTTCTTTTAAATAAAGAATTAATTTCATGTTCAATTCCATCAATTTCTGTCAATATTAATTCTTGATTCTCAATTTAGACTCAAATTTTGTATGCAAGATACTAGAGTGTTCAAAATTAATGCAAGGTTAATTGAAATACTCCCATGAACAAAGTTTACTTAAGTCTTAATTGATTCTCTCTAATTTCTTAAATTGACTATTGCTTAATAAATTTCATTTATTTTTTGGCATTGAATTGAATTACAATCATTTTTTCTATGTGCACAATTAACTCTCATTTGATTCATCTTGCCAAGTTTATTAAAGAAAATCTAATTCTCTTTAATAAACATTTTTTTTAATAAAGTTGAAATTGCAAGAATTAAAACTTTCTTTTCTTAAAGAAATTTATCGTTCTTGATATTTTGATTAAATTTTTTCCAAGATCAAGCAAGTTGATCTTGATAAGAACTTAAATTCAAAATCTCATCCTAAATAAACAAATTCAATTTTCAAGCATTTTTTGACTCAATGATAAGAATGTATTAGCACCCTAAGCCCAATCCTCTCTTTATCAATTGAATTTAATTCTTTGATTTTTTTAATTTTTTCTTTAGAATTGATCACAACTTGCAACTTTGTCTCGTTCTTGATTTCTATTAATCCATCACAATTAATTCAAATGTTTTTCAATTCATTTGATCACTAATCTCATTTCTTGTGAGCTTTCATTCAAGAAACATAATTCTCCTCACTCCTTTGGGTTAGACATTCGTACTTCCGCCTACTACGGTAAGTAAGGGTAATCTACAAATTATTTTTAGCCAAGCCAATTCAAGGTAAGAAACCTTCCTTTCATCCATTTTAAAATTTTAAGTACTCTCGTTAATCAATTACGACCTTACTTTTTTATAACTCTTTACGAACATACATTCTTGGCACCGTCAGCCCCCTACTACTCAACCCTTTGAGTTAAACCAGGACTTATCCATCTTTTGCCCATCTTTAAAGGAAGTTGCAGAAAGAACCCACATAAACATCTTAAGGATTTCCATATGGTTTGTAATTCCATGAGGCCTCACGGCATCTCGGAAGAACAACTAAATTTATGGGCCTTTCATTTTTCCGTTACAAATGTAGCAAAAAGATGGCTACCATTTAGAATCAGGTACCTTAACCACTTGGGGTAGTCTAAAAAAGAAGTTATTAGAGAAACTTTTCCCCACCTCTAGAGTAGACAATATATGGGATAAGACAAGCCTTTGGAGAATCCCTCTTGGAGTATTGGGAAAGATTCAAAGAGCTTTGTGCTAGCTTTCCTCACCACCACATCTTCGACCCTTCTTTAATTCAATATTTATGTTCTGGTCTTTTGGCTTTCAATAGGAACACGGTTCATGCGGCGGCGGAAGGAGCTCTAGCCGACAAAACTCCCACTGAAGCGAGAGAGCTCATCTCTAGAATGGCGGAGAACTCTCATAGTTTTGGGAATAGAGCATTGAAACTTGACAACTCTCTAACAAAAGAGGTAAGTAAATTAAAATCTCAAATGCTAAATATGACAACTCTTCTTACTTCTTTTGTGCAAGGTGGTAATCTCAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGCCCGAACTTGATCGAGGATGCGAATATCATTCGTAAGTATGACCCCCACGGTAATTCATATAATTCGGGATGGAGAAACAACCCAATCTTGAGATGGGGGAATGACAACCAAAAGCCCACTCAAGCAACATCCTCCTCTTCAAACATAGGTATGAATCTTGAAGACATAGTCTAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTTACTACTGCCATAAGCAAGTTGGAAGGAAAGGACAAGCTTCCGGCCCAACCGAACCATGCAAACGTGAGTACCATCTCATTAAAAAGTGGTAAGATTCTTGACACCTTGGTATGGATGAATTGTTACGCAAACTAGGTAGTACGCGATGGTGATAGTTGTTTTTATGCGATGGTGAAATGATGATATATTAGGCGGTAGGATTATGATTATGCGATGATCTTATTCCTACTTCCGCGTTGCTGAATCTGATGATATGTCGTTTAATGTACAAGTTTTCTTCTTGCTTGCCCAAGTATAAGCGGAGCAAGAGGTTTCCTTGCAAGGCCAGGGTCGAACACAGGGAATTTCTATCAAAGGAGCTAAGTGAAATGCGTGTTTACCAGGCGGTATAGATCAAAGTGTAAAGCGATGTAAACATGTGATTGATAGAACTATTTTCTACTAAAAATATCTATCCTAATTCTTCAATATAAAGATCAAATTCTCATCAATGTTGTATTTTTATATAGGATATGATACTAGACCCCCACACAAGCTCTAAGACACAAAAATGA

mRNA sequence

ATGGCTCCAGAAGGCGATGAAGAGCCCATCACCGCGAAGAACGTCTTTAAACATTTCAAGATAGAGAAGAGGCTCTATCCCGCGAGAGGCGTTCTGCCAGCCTTCATCTCCACACCCATTCGCGCGTTCAAGTGGAAAAAGTTTTTCGAAAGGGTGACGGAGTTAAGGCCGGACGTAGTCAAGCTGTTTTACAAAGGGTTTATTGATCACGATGGTGACTACGCGGTGGTGAGGCAAAGAAGAGTCCACTTTCGGGCTGCAGCTATCAACGCGTTCTTCGAGCTGGAGAACAACGAAGTGGGGCAAATTATTTTCAAGAACCCCACTTCGCAAGATAAGGAAGACGCGTTGAAGAGGATCGCATGGCTTGGGACAAAATGGGATATAACGCCAACCGGGAAGTACCAGCTCTTCGCGCATAATTTGAACACCGAAGCAAGCGTCTGGTACTTCTTCGTGAAGAAGAAAATCATGCCATCACGCCACGACAGCACTATCGCCTGGAACACGATTGATGCAGCAGCGGGAGGAGCTCTAGGCAACAAAACCCCCACTGAGGCAAGAGAGCTCATCTCTAGAATGGCGGAGAACTCTCAAAGTTTTGGGAATAGAGGATCGGAACTTGACAATTCTCTAACAAAAGAGCCCACCCAAGCAACATCCTCTTCTTCGAACCAAGGTATGAATCTTAAAGATATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAACGACTCAACTTACTACCGTCATAAGCAAGTTGGAAGTAAAAGGCAAGCTTCTGCCCAACCGGACCATGCAAATGTTCGCTCCAAAGAAGAAGGAAACACCCAAGGAAGAAGAACTTTTGGAGATGTTTAGAAAGGTGCAAACCGACTTGCCCCTATTAGATGCAATCCAACAAGTGTCAAGGAACACGGTTCATGCGGCGGCGGAAGGAGCTCTAGCCGACAAAACTCCCACTGAAGCGAGAGAGCTCATCTCTAGAATGGCGGAGAACTCTCATAGTTTTGGGAATAGAGCATTGAAACTTGACAACTCTCTAACAAAAGAGGTAAGTAAATTAAAATCTCAAATGCTAAATATGACAACTCTTCTTACTTCTTTTGTGCAAGGTGGTAATCTCAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGCCCGAACTTGATCGAGGATGCGAATATCATTCGTAAGTATGACCCCCACGGTAATTCATATAATTCGGGATGGAGAAACAACCCAATCTTGAGATGGGGGAATGACAACCAAAAGCCCACTCAAGCAACATCCTCCTCTTCAAACATAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTTACTACTGCCATAAGCAAGTTGGAAGGAAAGGACAAGCTTCCGGCCCAACCGAACCATGCAAACTATAAGCGGAGCAAGAGGTTTCCTTGCAAGGCCAGGGTCGAACACAGGGAATTTCTATCAAAGGAGCTAAGTGAAATGCGTGTTTACCAGGCGGATATGATACTAGACCCCCACACAAGCTCTAAGACACAAAAATGA

Coding sequence (CDS)

ATGGCTCCAGAAGGCGATGAAGAGCCCATCACCGCGAAGAACGTCTTTAAACATTTCAAGATAGAGAAGAGGCTCTATCCCGCGAGAGGCGTTCTGCCAGCCTTCATCTCCACACCCATTCGCGCGTTCAAGTGGAAAAAGTTTTTCGAAAGGGTGACGGAGTTAAGGCCGGACGTAGTCAAGCTGTTTTACAAAGGGTTTATTGATCACGATGGTGACTACGCGGTGGTGAGGCAAAGAAGAGTCCACTTTCGGGCTGCAGCTATCAACGCGTTCTTCGAGCTGGAGAACAACGAAGTGGGGCAAATTATTTTCAAGAACCCCACTTCGCAAGATAAGGAAGACGCGTTGAAGAGGATCGCATGGCTTGGGACAAAATGGGATATAACGCCAACCGGGAAGTACCAGCTCTTCGCGCATAATTTGAACACCGAAGCAAGCGTCTGGTACTTCTTCGTGAAGAAGAAAATCATGCCATCACGCCACGACAGCACTATCGCCTGGAACACGATTGATGCAGCAGCGGGAGGAGCTCTAGGCAACAAAACCCCCACTGAGGCAAGAGAGCTCATCTCTAGAATGGCGGAGAACTCTCAAAGTTTTGGGAATAGAGGATCGGAACTTGACAATTCTCTAACAAAAGAGCCCACCCAAGCAACATCCTCTTCTTCGAACCAAGGTATGAATCTTAAAGATATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAACGACTCAACTTACTACCGTCATAAGCAAGTTGGAAGTAAAAGGCAAGCTTCTGCCCAACCGGACCATGCAAATGTTCGCTCCAAAGAAGAAGGAAACACCCAAGGAAGAAGAACTTTTGGAGATGTTTAGAAAGGTGCAAACCGACTTGCCCCTATTAGATGCAATCCAACAAGTGTCAAGGAACACGGTTCATGCGGCGGCGGAAGGAGCTCTAGCCGACAAAACTCCCACTGAAGCGAGAGAGCTCATCTCTAGAATGGCGGAGAACTCTCATAGTTTTGGGAATAGAGCATTGAAACTTGACAACTCTCTAACAAAAGAGGTAAGTAAATTAAAATCTCAAATGCTAAATATGACAACTCTTCTTACTTCTTTTGTGCAAGGTGGTAATCTCAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGCCCGAACTTGATCGAGGATGCGAATATCATTCGTAAGTATGACCCCCACGGTAATTCATATAATTCGGGATGGAGAAACAACCCAATCTTGAGATGGGGGAATGACAACCAAAAGCCCACTCAAGCAACATCCTCCTCTTCAAACATAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTTACTACTGCCATAAGCAAGTTGGAAGGAAAGGACAAGCTTCCGGCCCAACCGAACCATGCAAACTATAAGCGGAGCAAGAGGTTTCCTTGCAAGGCCAGGGTCGAACACAGGGAATTTCTATCAAAGGAGCTAAGTGAAATGCGTGTTTACCAGGCGGATATGATACTAGACCCCCACACAAGCTCTAAGACACAAAAATGA

Protein sequence

MAPEGDEEPITAKNVFKHFKIEKRLYPARGVLPAFISTPIRAFKWKKFFERVTELRPDVVKLFYKGFIDHDGDYAVVRQRRVHFRAAAINAFFELENNEVGQIIFKNPTSQDKEDALKRIAWLGTKWDITPTGKYQLFAHNLNTEASVWYFFVKKKIMPSRHDSTIAWNTIDAAAGGALGNKTPTEARELISRMAENSQSFGNRGSELDNSLTKEPTQATSSSSNQGMNLKDIVKALATNTLSFQQEMKQQTTQLTTVISKLEVKGKLLPNRTMQMFAPKKKETPKEEELLEMFRKVQTDLPLLDAIQQVSRNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSNIATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHANYKRSKRFPCKARVEHREFLSKELSEMRVYQADMILDPHTSSKTQK
Homology
[Close]
BLAST of PI0028212 vs. ExPASy TrEMBL
Match: A0A5A7ULU1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002130 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-72
Identity = 147/189 (77.78%), Postives = 159/189 (84.13%), Query Frame = 0 

Query: 312 RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMT 371
           RNTV  A  GALADKTPTEARELISRMAENS SFGNRA KLDNSLTKEVS+LKSQMLNMT
Sbjct: 14  RNTVDVAVGGALADKTPTEARELISRMAENSQSFGNRASKLDNSLTKEVSELKSQMLNMT 73

Query: 372 TLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPIL 431
           TLLTSFVQG  LKVTKCGVCGLVGHPNDKCP +IED N++R+YDPHGN+ NSGWR+NP  
Sbjct: 74  TLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNVVRRYDPHGNTCNSGWRDNPNF 133

Query: 432 RWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDK 490
           RWGNDNQK TQ   +SSN           +A NTLSFQQEMKQQ+TQLTTAISK++GK K
Sbjct: 134 RWGNDNQKHTQVPPTSSNQGTNLKDIIKALAINTLSFQQEMKQQITQLTTAISKMDGKGK 193

[Close]
BLAST of PI0028212 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.8e-72
Identity = 149/189 (78.84%), Postives = 161/189 (85.19%), Query Frame = 0 

Query: 312 RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMT 371
           RNTV A A GALADK PTEARELIS+MAENS SF NRA +LDNSLTKEVS+LKSQMLNMT
Sbjct: 84  RNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVSELKSQMLNMT 143

Query: 372 TLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPIL 431
           TLLTSFVQG  LKVTKCGVCGLVGHPNDKCP +IED NI+RKYDPHGN+YNSGWR+NP L
Sbjct: 144 TLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNL 203

Query: 432 RWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDK 490
           RWGNDNQK TQA S+SSN           +ATNTLSFQQEMKQQMTQLTTAISK++GK K
Sbjct: 204 RWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGK 263

[Close]
BLAST of PI0028212 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.8e-72
Identity = 154/220 (70.00%), Postives = 174/220 (79.09%), Query Frame = 0 

Query: 286 KEEELLEMFRKVQTDLPLLDAIQ-----QVSRNTVHAAAEGALADKTPTEARELISRMAE 345
           +E   +   RK +  +P L   +     + SRNT+  AA GALADKTPTEARELISRMAE
Sbjct: 17  REVRRIRRERKEENSIPNLSNQEPLRGSEPSRNTLDVAAGGALADKTPTEARELISRMAE 76

Query: 346 NSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDK 405
           NS SFGNRA +LDNSLTKEVS+LKSQMLNMTTLLTSFVQG   KVTKCGVCGLVGHPNDK
Sbjct: 77  NSESFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDK 136

Query: 406 CPNLIEDANIIRKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN----------- 465
           CP +IED NI+R+YDPH N+YNSGWR+N  LRWGNDNQK TQA S+SSN           
Sbjct: 137 CPKVIEDVNIVRRYDPHSNTYNSGWRDNLNLRWGNDNQKYTQAPSTSSNQGTNLEDIIKA 196

Query: 466 IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN 490
           +ATNTLSFQQ+MKQQMTQLTTAISK++GK KLPAQP+HAN
Sbjct: 197 LATNTLSFQQKMKQQMTQLTTAISKMDGKGKLPAQPDHAN 236

[Close]
BLAST of PI0028212 vs. ExPASy TrEMBL
Match: A0A5A7SQH8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00200 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 3.5e-71
Identity = 144/188 (76.60%), Postives = 159/188 (84.57%), Query Frame = 0 

Query: 312 RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMT 371
           RN V AAA GALADKTP EARELI RMAENS +FGNRA +LDNSLTKEVS+LKSQMLNMT
Sbjct: 107 RNKVDAAARGALADKTPIEARELILRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMT 166

Query: 372 TLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPIL 431
           TLLTSFVQG  LKVTKCGVCGLVG+PNDKCP +IED NI+R+YDPHGN+YN GWR+NP L
Sbjct: 167 TLLTSFVQGTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNPNL 226

Query: 432 RWGNDNQKPTQATSSSSN----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKL 490
           RWGNDNQK TQA  +SSN          +ATNTLSFQQEMKQQMTQLTT +SK++GK KL
Sbjct: 227 RWGNDNQKHTQAPPTSSNQGTNLEDIIALATNTLSFQQEMKQQMTQLTTVLSKMDGKGKL 286

[Close]
BLAST of PI0028212 vs. ExPASy TrEMBL
Match: A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 4.5e-71
Identity = 145/189 (76.72%), Postives = 159/189 (84.13%), Query Frame = 0 

Query: 312 RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMT 371
           RNT+   A GALADKTPTEARELISRM ENS SFGNRA +LDNSLTKEVS+LKSQMLNMT
Sbjct: 111 RNTIDVVAGGALADKTPTEARELISRMVENSQSFGNRASELDNSLTKEVSELKSQMLNMT 170

Query: 372 TLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPIL 431
           TLLTSFVQG   KVTKCGVCGLVGHPNDKC  +IED NI+R+YDPH N+YNSGWR+NP L
Sbjct: 171 TLLTSFVQGTPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNL 230

Query: 432 RWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDK 490
           RWGNDNQK TQA S+SSN           + TNTLSFQQEMKQQMTQLTTAISK++GK K
Sbjct: 231 RWGNDNQKHTQAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGKGK 290

[Close]
BLAST of PI0028212 vs. NCBI nr
Match: KAA0056048.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 284.3 bits (726), Expect = 2.2e-72
Identity = 147/189 (77.78%), Postives = 159/189 (84.13%), Query Frame = 0 

Query: 312 RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMT 371
           RNTV  A  GALADKTPTEARELISRMAENS SFGNRA KLDNSLTKEVS+LKSQMLNMT
Sbjct: 14  RNTVDVAVGGALADKTPTEARELISRMAENSQSFGNRASKLDNSLTKEVSELKSQMLNMT 73

Query: 372 TLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPIL 431
           TLLTSFVQG  LKVTKCGVCGLVGHPNDKCP +IED N++R+YDPHGN+ NSGWR+NP  
Sbjct: 74  TLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNVVRRYDPHGNTCNSGWRDNPNF 133

Query: 432 RWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDK 490
           RWGNDNQK TQ   +SSN           +A NTLSFQQEMKQQ+TQLTTAISK++GK K
Sbjct: 134 RWGNDNQKHTQVPPTSSNQGTNLKDIIKALAINTLSFQQEMKQQITQLTTAISKMDGKGK 193

[Close]
BLAST of PI0028212 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 3.8e-72
Identity = 149/189 (78.84%), Postives = 161/189 (85.19%), Query Frame = 0 

Query: 312 RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMT 371
           RNTV A A GALADK PTEARELIS+MAENS SF NRA +LDNSLTKEVS+LKSQMLNMT
Sbjct: 84  RNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVSELKSQMLNMT 143

Query: 372 TLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPIL 431
           TLLTSFVQG  LKVTKCGVCGLVGHPNDKCP +IED NI+RKYDPHGN+YNSGWR+NP L
Sbjct: 144 TLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNL 203

Query: 432 RWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDK 490
           RWGNDNQK TQA S+SSN           +ATNTLSFQQEMKQQMTQLTTAISK++GK K
Sbjct: 204 RWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGK 263

[Close]
BLAST of PI0028212 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 3.8e-72
Identity = 154/220 (70.00%), Postives = 174/220 (79.09%), Query Frame = 0 

Query: 286 KEEELLEMFRKVQTDLPLLDAIQ-----QVSRNTVHAAAEGALADKTPTEARELISRMAE 345
           +E   +   RK +  +P L   +     + SRNT+  AA GALADKTPTEARELISRMAE
Sbjct: 17  REVRRIRRERKEENSIPNLSNQEPLRGSEPSRNTLDVAAGGALADKTPTEARELISRMAE 76

Query: 346 NSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDK 405
           NS SFGNRA +LDNSLTKEVS+LKSQMLNMTTLLTSFVQG   KVTKCGVCGLVGHPNDK
Sbjct: 77  NSESFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDK 136

Query: 406 CPNLIEDANIIRKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN----------- 465
           CP +IED NI+R+YDPH N+YNSGWR+N  LRWGNDNQK TQA S+SSN           
Sbjct: 137 CPKVIEDVNIVRRYDPHSNTYNSGWRDNLNLRWGNDNQKYTQAPSTSSNQGTNLEDIIKA 196

Query: 466 IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN 490
           +ATNTLSFQQ+MKQQMTQLTTAISK++GK KLPAQP+HAN
Sbjct: 197 LATNTLSFQQKMKQQMTQLTTAISKMDGKGKLPAQPDHAN 236

[Close]
BLAST of PI0028212 vs. NCBI nr
Match: KAA0032798.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.3 bits (713), Expect = 7.2e-71
Identity = 144/188 (76.60%), Postives = 159/188 (84.57%), Query Frame = 0 

Query: 312 RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMT 371
           RN V AAA GALADKTP EARELI RMAENS +FGNRA +LDNSLTKEVS+LKSQMLNMT
Sbjct: 107 RNKVDAAARGALADKTPIEARELILRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMT 166

Query: 372 TLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPIL 431
           TLLTSFVQG  LKVTKCGVCGLVG+PNDKCP +IED NI+R+YDPHGN+YN GWR+NP L
Sbjct: 167 TLLTSFVQGTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNPNL 226

Query: 432 RWGNDNQKPTQATSSSSN----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKL 490
           RWGNDNQK TQA  +SSN          +ATNTLSFQQEMKQQMTQLTT +SK++GK KL
Sbjct: 227 RWGNDNQKHTQAPPTSSNQGTNLEDIIALATNTLSFQQEMKQQMTQLTTVLSKMDGKGKL 286

[Close]
BLAST of PI0028212 vs. NCBI nr
Match: KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.9 bits (712), Expect = 9.4e-71
Identity = 145/189 (76.72%), Postives = 159/189 (84.13%), Query Frame = 0 

Query: 312 RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMT 371
           RNT+   A GALADKTPTEARELISRM ENS SFGNRA +LDNSLTKEVS+LKSQMLNMT
Sbjct: 111 RNTIDVVAGGALADKTPTEARELISRMVENSQSFGNRASELDNSLTKEVSELKSQMLNMT 170

Query: 372 TLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPIL 431
           TLLTSFVQG   KVTKCGVCGLVGHPNDKC  +IED NI+R+YDPH N+YNSGWR+NP L
Sbjct: 171 TLLTSFVQGTPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNL 230

Query: 432 RWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDK 490
           RWGNDNQK TQA S+SSN           + TNTLSFQQEMKQQMTQLTTAISK++GK K
Sbjct: 231 RWGNDNQKHTQAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGKGK 290

The following BLAST results are available for this feature:
BLAST of PI0028212 vs.
Match NameE-valueIdentityDescription
BLAST of PI0028212 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7ULU11.1e-7277.78Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3CRR81.8e-7278.84Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3CB461.8e-7270.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7SQH83.5e-7176.60Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7V0Q74.5e-7176.72Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
BLAST of PI0028212 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056048.12.2e-7277.78retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0047407.13.8e-7278.84retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... [more]
TYK07549.13.8e-7270.00retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0032798.17.2e-7176.60retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotranspos... [more]
KAA0061138.19.4e-7176.72retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of PI0028212 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 458..478
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..226
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 312..466
NoneNo IPR availablePANTHERPTHR24559:SF334SUBFAMILY NOT NAMEDcoord: 168..203
NoneNo IPR availablePANTHERPTHR24559:SF334SUBFAMILY NOT NAMEDcoord: 277..312
coord: 312..466
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 168..203
coord: 277..312

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028212.1PI0028212.1mRNA