PI0028162 (gene) Melon (PI 482460) v1

Overview


Name	PI0028162
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr12: 16934981 .. 16935202 (-)
RNA-Seq Expression	PI0028162
Synteny	PI0028162

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGGGGTTTACTACGGTAACCCGGTCTAAAGCAAGATCATTCGACATACGAATTGAATCCCTCACGGAGTCTTCTACTCCACCTAGGCCTTCGGCTAATCTTTTTCATCCTTCTGGTGGAGTCACTCAAATGAGACCTCCTGCCTCTCCTTCGTCAAATATGGAGTCATCTACTCCTTCTACGACGTATTCTCAGGCCGTCACTCCAGAAAAATGA

mRNA sequence

ATGGATTTGGGGTTTACTACGGTAACCCGGTCTAAAGCAAGATCATTCGACATACGAATTGAATCCCTCACGGAGTCTTCTACTCCACCTAGGCCTTCGGCTAATCTTTTTCATCCTTCTGGTGGAGTCACTCAAATGAGACCTCCTGCCTCTCCTTCGTCAAATATGGAGTCATCTACTCCTTCTACGACGTATTCTCAGGCCGTCACTCCAGAAAAATGA

Coding sequence (CDS)

ATGGATTTGGGGTTTACTACGGTAACCCGGTCTAAAGCAAGATCATTCGACATACGAATTGAATCCCTCACGGAGTCTTCTACTCCACCTAGGCCTTCGGCTAATCTTTTTCATCCTTCTGGTGGAGTCACTCAAATGAGACCTCCTGCCTCTCCTTCGTCAAATATGGAGTCATCTACTCCTTCTACGACGTATTCTCAGGCCGTCACTCCAGAAAAATGA

Protein sequence

MDLGFTTVTRSKARSFDIRIESLTESSTPPRPSANLFHPSGGVTQMRPPASPSSNMESSTPSTTYSQAVTPEK

Homology

[Close]

BLAST of PI0028162 vs. ExPASy TrEMBL
Match: A0A5D3BPD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00610 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.6e-22
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1   MDLGFTTVTRSKARSFDIRIESLTESSTPPRPSANLFHPSGGVTQMRPPASPSSNMESST 60
           M++GFTTVTRS++RS +IRI SLTES+TPPRPS NL HPS GV QMRPPASPSSN ESST
Sbjct: 40  MEVGFTTVTRSRSRSSNIRIGSLTESTTPPRPSVNLIHPSSGVVQMRPPASPSSNRESST 99

Query: 61  PSTTYSQAVTPEK 74
           PSTTYSQAVTP+K
Sbjct: 100 PSTTYSQAVTPDK 112

[Close]

BLAST of PI0028162 vs. ExPASy TrEMBL
Match: A0A5D3BM67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00180 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MDLGFTTVTRSKARSFDIRIESLTESSTPPRPSANLFHPSGGVTQMRPPASPSSNMESST 60
          MDLGFTTVTRS++RS  IRIES TESSTPPRPSANL  P GG  QMRPPASPSSN ESST
Sbjct: 8  MDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPSSNRESST 67

Query: 61 PSTTYSQAVTPEK 74
          P TTYSQ VTP+K
Sbjct: 68 PPTTYSQTVTPDK 80

[Close]

BLAST of PI0028162 vs. ExPASy TrEMBL
Match: A0A5A7V3Q0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00760 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MDLGFTTVTRSKARSFDIRIESLTESSTPPRPSANLFHPSGGVTQMRPPASPSSNMESST 60
          MDLGFTTVTRS++RS DIRI S TESSTPPRPSANL  PSG V QMRP ASPSSN ESST
Sbjct: 8  MDLGFTTVTRSRSRSSDIRIGSPTESSTPPRPSANLIRPSGRVVQMRPHASPSSNRESST 67

Query: 61 PSTTYSQAVTPEK 74
          P TTYSQAVTP K
Sbjct: 68 PPTTYSQAVTPNK 80

[Close]

BLAST of PI0028162 vs. ExPASy TrEMBL
Match: A0A5D3CBW7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1300G00210 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MDLGFTTVTRSKARSFDIRIESLTESSTPPRPSANLFHPSGGVTQMRPPASPSSNMESST 60
          MDLGFTTVTRS++RS  IRI SLTESSTPPRPSANL  PSGGV QMRP ASPSSN E ST
Sbjct: 8  MDLGFTTVTRSRSRSSGIRIGSLTESSTPPRPSANLICPSGGVVQMRPSASPSSNKEYST 67

Query: 61 PSTTYSQAVTPEK 74
          P TTYSQ VTP+K
Sbjct: 68 PPTTYSQVVTPDK 80

[Close]

BLAST of PI0028162 vs. ExPASy TrEMBL
Match: A0A5D3BUE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00210 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.5e-20
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1  MDLGFTTVTRSKARSFDIRIESLTESSTPPRPSANLFHPSGGVTQMRPPASPSSNMESST 60
          MDLGFTTVTRS++RS DI+I S TESSTPPRPSANL  PS G  QMRPPASPSSN ESST
Sbjct: 8  MDLGFTTVTRSRSRSSDIQIGSPTESSTPPRPSANLIRPSSGFVQMRPPASPSSNNESST 67

Query: 61 PSTTYSQAVTP 72
          P TTYSQAVTP
Sbjct: 68 PPTTYSQAVTP 78

[Close]

BLAST of PI0028162 vs. NCBI nr
Match: KAA0066384.1 (hypothetical protein E6C27_scaffold21G004590 [Cucumis melo var. makuwa] >TYK00900.1 hypothetical protein E5676_scaffold602G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 5.4e-22
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1   MDLGFTTVTRSKARSFDIRIESLTESSTPPRPSANLFHPSGGVTQMRPPASPSSNMESST 60
           M++GFTTVTRS++RS +IRI SLTES+TPPRPS NL HPS GV QMRPPASPSSN ESST
Sbjct: 40  MEVGFTTVTRSRSRSSNIRIGSLTESTTPPRPSVNLIHPSSGVVQMRPPASPSSNRESST 99

Query: 61  PSTTYSQAVTPEK 74
           PSTTYSQAVTP+K
Sbjct: 100 PSTTYSQAVTPDK 112

[Close]

BLAST of PI0028162 vs. NCBI nr
Match: KAA0066421.1 (hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK00863.1 hypothetical protein E5676_scaffold602G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.5e-21
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MDLGFTTVTRSKARSFDIRIESLTESSTPPRPSANLFHPSGGVTQMRPPASPSSNMESST 60
          MDLGFTTVTRS++RS  IRIES TESSTPPRPSANL  P GG  QMRPPASPSSN ESST
Sbjct: 8  MDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPSSNRESST 67

Query: 61 PSTTYSQAVTPEK 74
          P TTYSQ VTP+K
Sbjct: 68 PPTTYSQTVTPDK 80

[Close]

BLAST of PI0028162 vs. NCBI nr
Match: KAA0060485.1 (hypothetical protein E6C27_scaffold22G003180 [Cucumis melo var. makuwa] >TYK18570.1 hypothetical protein E5676_scaffold119G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-20
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MDLGFTTVTRSKARSFDIRIESLTESSTPPRPSANLFHPSGGVTQMRPPASPSSNMESST 60
          MDLGFTTVTRS++RS DIRI S TESSTPPRPSANL  PSG V QMRP ASPSSN ESST
Sbjct: 8  MDLGFTTVTRSRSRSSDIRIGSPTESSTPPRPSANLIRPSGRVVQMRPHASPSSNRESST 67

Query: 61 PSTTYSQAVTPEK 74
          P TTYSQAVTP K
Sbjct: 68 PPTTYSQAVTPNK 80

[Close]

BLAST of PI0028162 vs. NCBI nr
Match: TYK08792.1 (hypothetical protein E5676_scaffold1300G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 3.9e-20
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MDLGFTTVTRSKARSFDIRIESLTESSTPPRPSANLFHPSGGVTQMRPPASPSSNMESST 60
          MDLGFTTVTRS++RS  IRI SLTESSTPPRPSANL  PSGGV QMRP ASPSSN E ST
Sbjct: 8  MDLGFTTVTRSRSRSSGIRIGSLTESSTPPRPSANLICPSGGVVQMRPSASPSSNKEYST 67

Query: 61 PSTTYSQAVTPEK 74
          P TTYSQ VTP+K
Sbjct: 68 PPTTYSQVVTPDK 80

[Close]

BLAST of PI0028162 vs. NCBI nr
Match: TYK02422.1 (hypothetical protein E5676_scaffold1738G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 5.1e-20
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1  MDLGFTTVTRSKARSFDIRIESLTESSTPPRPSANLFHPSGGVTQMRPPASPSSNMESST 60
          MDLGFTTVTRS++RS DI+I S TESSTPPRPSANL  PS G  QMRPPASPSSN ESST
Sbjct: 8  MDLGFTTVTRSRSRSSDIQIGSPTESSTPPRPSANLIRPSSGFVQMRPPASPSSNNESST 67

Query: 61 PSTTYSQAVTP 72
          P TTYSQAVTP
Sbjct: 68 PPTTYSQAVTP 78

The following BLAST results are available for this feature:

BLAST of PI0028162 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028162 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPD3	2.6e-22	80.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BM67	1.7e-21	80.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V3Q0	1.1e-20	82.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CBW7	1.9e-20	80.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BUE2	2.5e-20	81.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0028162 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066384.1	5.4e-22	80.82	hypothetical protein E6C27_scaffold21G004590 [Cucumis melo var. makuwa] >TYK0090...	[more]
KAA0066421.1	3.5e-21	80.82	hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK0086...	[more]
KAA0060485.1	2.3e-20	82.19	hypothetical protein E6C27_scaffold22G003180 [Cucumis melo var. makuwa] >TYK1857...	[more]
TYK08792.1	3.9e-20	80.82	hypothetical protein E5676_scaffold1300G00210 [Cucumis melo var. makuwa]	[more]
TYK02422.1	5.1e-20	81.69	hypothetical protein E5676_scaffold1738G00210 [Cucumis melo var. makuwa]	[more]

BLAST of PI0028162 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028162.1	PI0028162.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding