PI0028134 (gene) Melon (PI 482460) v1

Overview


Name	PI0028134
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	conserved peptide upstream open reading frame 53
Location	chr03: 17391341 .. 17391663 (+)
RNA-Seq Expression	PI0028134
Synteny	PI0028134

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCATCTTTACTTCTCATTTTCGGCTCTTTCAAGCAGAGCCTCAATCTGCTGTTTTCATCTGTTTCGATGCGTTTGAGGCCGAAGAGGTTTGTTGGGTTTTTTCTTCTTTTGATTTTTCTTTTCTGGGTTTTAATCTGATTTTTTTTTTTTAATTTTGTTTTCTGGGTGGTTTTTGCAGGACTTGTTCTGGAGTCAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTTTTGCTCTTTAGAAAAGGGGGTTTCACTTAG

mRNA sequence

ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCATCTTTACTTCTCATTTTCGGCTCTTTCAAGCAGAGCCTCAATCTGCTGTTTTCATCTGTTTCGATGCGTTTGAGGCCGAAGAGGACTTGTTCTGGAGTCAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTTTTGCTCTTTAGAAAAGGGGGTTTCACTTAG

Coding sequence (CDS)

ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCATCTTTACTTCTCATTTTCGGCTCTTTCAAGCAGAGCCTCAATCTGCTGTTTTCATCTGTTTCGATGCGTTTGAGGCCGAAGAGGACTTGTTCTGGAGTCAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTTTTGCTCTTTAGAAAAGGGGGTTTCACTTAG

Protein sequence

MSAGFDLAVIGALLQLCFSSLLLIFGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRKGGFT

Homology

[Close]

BLAST of PI0028134 vs. ExPASy TrEMBL
Match: A0A0A0KAV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G039145 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-31
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFSSLLLIFGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI 60
          MSAGFDLAVIGALLQLCFSSLLLI GSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI
Sbjct: 1  MSAGFDLAVIGALLQLCFSSLLLILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI 60

Query: 61 KRFSFLLLLFRKGGFT 77
          KRFSFLLLLFRKGGFT
Sbjct: 61 KRFSFLLLLFRKGGFT 76

[Close]

BLAST of PI0028134 vs. ExPASy TrEMBL
Match: A0A7J8T161 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_000654 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.8e-13
Identity = 51/89 (57.30%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFS-------------SLLLIFGSFKQSLNLLFSSVSMRLRPKR 60
          MS  FDLA+IGA LQLCFS             SL L F  ++Q LNL+  SVSMRLRPK+
Sbjct: 1  MSTEFDLALIGARLQLCFSSSTVFCSHLFIKASLALCF--YRQRLNLVLPSVSMRLRPKK 60

Query: 61 TCSGVKCFGAFHIKRFSFLLLLFRKGGFT 77
          TCSGV CFG FHIK+  F LLLF +G +T
Sbjct: 61 TCSGVGCFGGFHIKQRFFYLLLFLRGAYT 87

[Close]

BLAST of PI0028134 vs. ExPASy TrEMBL
Match: A0A7J8VXR7 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_000619 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.8e-13
Identity = 51/89 (57.30%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFS-------------SLLLIFGSFKQSLNLLFSSVSMRLRPKR 60
          MS  FDLA+IGA LQLCFS             SL L F  ++Q LNL+  SVSMRLRPK+
Sbjct: 1  MSTEFDLALIGARLQLCFSSSTVFCSHLFIKASLALCF--YRQRLNLVLPSVSMRLRPKK 60

Query: 61 TCSGVKCFGAFHIKRFSFLLLLFRKGGFT 77
          TCSGV CFG FHIK+  F LLLF +G +T
Sbjct: 61 TCSGVGCFGGFHIKQRFFYLLLFLRGAYT 87

[Close]

BLAST of PI0028134 vs. ExPASy TrEMBL
Match: A0A0D2W3V4 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G076200 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.9e-13
Identity = 50/89 (56.18%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFS-------------SLLLIFGSFKQSLNLLFSSVSMRLRPKR 60
          MS  FDLA+IGA LQLCFS             SL L F  ++Q LNL+   VSMRLRPK+
Sbjct: 1  MSTEFDLALIGARLQLCFSSSTIFCSHLFIKASLALCF--YRQRLNLVLPIVSMRLRPKK 60

Query: 61 TCSGVKCFGAFHIKRFSFLLLLFRKGGFT 77
          TCSGV CFG FHIK+  F LLLF +G +T
Sbjct: 61 TCSGVGCFGGFHIKQRFFYLLLFLRGAYT 87

[Close]

BLAST of PI0028134 vs. ExPASy TrEMBL
Match: A0A5D2HVG1 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D13G078900v1 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.9e-13
Identity = 50/89 (56.18%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFS-------------SLLLIFGSFKQSLNLLFSSVSMRLRPKR 60
          MS  FDLA+IGA LQLCFS             SL L F  ++Q LNL+   VSMRLRPK+
Sbjct: 1  MSTEFDLALIGARLQLCFSSSTIFCSHLFIKASLALCF--YRQRLNLVLPIVSMRLRPKK 60

Query: 61 TCSGVKCFGAFHIKRFSFLLLLFRKGGFT 77
          TCSGV CFG FHIK+  F LLLF +G +T
Sbjct: 61 TCSGVGCFGGFHIKQRLFYLLLFLRGAYT 87

[Close]

BLAST of PI0028134 vs. NCBI nr
Match: KGN45959.1 (hypothetical protein Csa_005610 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 3.9e-31
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFSSLLLIFGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI 60
          MSAGFDLAVIGALLQLCFSSLLLI GSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI
Sbjct: 1  MSAGFDLAVIGALLQLCFSSLLLILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI 60

Query: 61 KRFSFLLLLFRKGGFT 77
          KRFSFLLLLFRKGGFT
Sbjct: 61 KRFSFLLLLFRKGGFT 76

[Close]

BLAST of PI0028134 vs. NCBI nr
Match: KAG6579195.1 (hypothetical protein SDJN03_23643, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016707.1 hypothetical protein SDJN02_21817 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 68/85 (80.00%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCF----SSLLL----IFGSFKQSLNLLFSSVSMRLRPKRTCSGV 60
          MSAGFDLAVIGALLQLCF    SSLLL    I   FKQSLNL+F SVSMR RPKRTCSGV
Sbjct: 1  MSAGFDLAVIGALLQLCFSSSSSSLLLSCCMILCCFKQSLNLVFPSVSMRFRPKRTCSGV 60

Query: 61 KCFGAFHIKRF-SFLLLLFRKGGFT 77
          KCFGAFHIKRF SF+LLLFR+GGFT
Sbjct: 61 KCFGAFHIKRFSSFILLLFRRGGFT 85

[Close]

BLAST of PI0028134 vs. NCBI nr
Match: KAG6672509.1 (hypothetical protein I3842_16G060900 [Carya illinoinensis] >KAG7941769.1 hypothetical protein I3843_16G063000 [Carya illinoinensis])

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-15
Identity = 56/88 (63.64%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQL------CFSSLLLIFGS------FKQSLNLLFSSVSMRLRPKRT 60
          MSAGFDL +IGALL+L       FS+L  IF        F+Q LNL++ SVSMRLRPKRT
Sbjct: 1  MSAGFDLVLIGALLKLWLFSVATFSALFAIFFCCMLLCFFRQRLNLVYCSVSMRLRPKRT 60

Query: 61 CSGVKCFGAFHIKRFSFLLLLFRKGGFT 77
          CSGVKCFGAFHIKRF F L LF +GG T
Sbjct: 61 CSGVKCFGAFHIKRF-FSLFLFLRGGLT 87

[Close]

BLAST of PI0028134 vs. NCBI nr
Match: KAG2664121.1 (hypothetical protein I3760_16G064500 [Carya illinoinensis] >KAG6624987.1 hypothetical protein CIPAW_16G064600 [Carya illinoinensis])

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-15
Identity = 56/88 (63.64%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQL------CFSSLLLIFGS------FKQSLNLLFSSVSMRLRPKRT 60
          MSAGFDL +IGALL+L       FS+L  IF        F+Q LNL++ SVSMRLRPKRT
Sbjct: 1  MSAGFDLVLIGALLKLWLFSAATFSALFAIFFCCMLLCFFRQRLNLVYCSVSMRLRPKRT 60

Query: 61 CSGVKCFGAFHIKRFSFLLLLFRKGGFT 77
          CSGVKCFGAFHIKRF F L LF +GG T
Sbjct: 61 CSGVKCFGAFHIKRF-FSLFLFLRGGLT 87

[Close]

BLAST of PI0028134 vs. NCBI nr
Match: KAG6626895.1 (hypothetical protein CIPAW_15G084200 [Carya illinoinensis] >KAG6626896.1 hypothetical protein CIPAW_15G084200 [Carya illinoinensis] >KAG6626897.1 hypothetical protein CIPAW_15G084200 [Carya illinoinensis])

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 52/86 (60.47%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLC---FSSLLLIFG----------SFKQSLNLLFSSVSMRLRPKR 60
          MSA F+L +IGALLQLC    S+L  +F            F+Q LNL+  SVSMRLR KR
Sbjct: 1  MSAEFNLLLIGALLQLCVLAISTLSALFALVFCWRMFLCCFRQRLNLVHRSVSMRLRSKR 60

Query: 61 TCSGVKCFGAFHIKRFSFLLLLFRKG 74
          TCSGVKCFGAFHIKRFSFL L  R G
Sbjct: 61 TCSGVKCFGAFHIKRFSFLFLFLRVG 86

[Close]

BLAST of PI0028134 vs. TAIR 10
Match: AT1G68552.1 (conserved peptide upstream open reading frame 53 )

HSP 1 Score: 48.5 bits (114), Expect = 2.7e-06
Identity = 39/86 (45.35%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQL----------CFSSL------LLIFGSFKQSLNLLFSSVSMRLR 60
          MSAGF+  VI +L+ +            SSL       L F   KQ L L   S+SMRLR
Sbjct: 1  MSAGFESTVILSLIHISSPISSSSSPSSSSLKSCLLNALHFCCNKQRLVLETPSLSMRLR 60

Query: 61 PKRTCSGVKCFGAFHIK--RFSFLLL 69
          PKRTCS V+ FG FHIK  +FSF ++
Sbjct: 61 PKRTCSSVEVFGGFHIKQQKFSFFIV 86

The following BLAST results are available for this feature:

BLAST of PI0028134 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028134 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAV1	1.9e-31	98.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G039145 PE=4 SV=1	[more]
A0A7J8T161	1.8e-13	57.30	Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_000654 PE=4 SV...	[more]
A0A7J8VXR7	1.8e-13	57.30	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_000619 PE=4...	[more]
A0A0D2W3V4	8.9e-13	56.18	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G076200 PE=4 ...	[more]
A0A5D2HVG1	8.9e-13	56.18	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D13G078900v1 P...	[more]

BLAST of PI0028134 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45959.1	3.9e-31	98.68	hypothetical protein Csa_005610 [Cucumis sativus]	[more]
KAG6579195.1	1.1e-22	80.00	hypothetical protein SDJN03_23643, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6672509.1	2.3e-15	63.64	hypothetical protein I3842_16G060900 [Carya illinoinensis] >KAG7941769.1 hypothe...	[more]
KAG2664121.1	2.3e-15	63.64	hypothetical protein I3760_16G064500 [Carya illinoinensis] >KAG6624987.1 hypothe...	[more]
KAG6626895.1	1.3e-13	60.47	hypothetical protein CIPAW_15G084200 [Carya illinoinensis] >KAG6626896.1 hypothe...	[more]

BLAST of PI0028134 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68552.1	2.7e-06	45.35	conserved peptide upstream open reading frame 53	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028134.1	PI0028134.1	mRNA