PI0028110 (gene) Melon (PI 482460) v1

Overview
NamePI0028110
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Locationchr08: 5566042 .. 5572540 (-)
RNA-Seq ExpressionPI0028110
SyntenyPI0028110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCACAAGCAACTTCATCCTCAAACAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCCACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACTAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCTCGATCATGCAAATGTAAGTGTCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGAAGAAAAGGTACCATCTATCCCTATCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATTTAGAAAACAATGCCTCTTCTTCTTCTTCAAAAGGTAAAACTAAAATTTCTGATTTTTCCCCTTTTGTTCCTAACGCTCCTTTTCCTTCCAGATTGGCCCCTAAAAAGAAAGAAACACCAAAGGAAGAAGAACTGCTGGAGATGTTCAGGAAAGTGCAAATCAACCTACCTCTGCTCGATGCGATCCAACAAGTCCCGAGGTATGCGAAGTTCTTAAAGGAATTATGCACAAACAAAAGGAAAATCAAGGAGAAGGCAACGGTAAGTCATAACGTTTCTGCTTTATTAAAAACTTCAATACCTGCAAAGCAAAACGACCCAGGTATGTTTTCTCTTCCTTGTATTATAGGAAATAGGCAAATTTCAAGTGCCATGTTAGACCTAGGAGCTTCCATCAATGTCATGCCATATTCTGTTTTTAAAGATCTTGAATTAAATAATTTACAAAAGACAAATGTATGCATTCAACTTGCTGATAGATCCTTTATATCACCGCTAGGGATAGTTGAAGATGTGCTAGTAAAAGTAGACAAATTAATATTTCCTGCGGATTTTTACATTCTTGAAATGAATGATGCATGTATAAAGCCTTCCCATTCAATTCTTCTAGGTAGACCTTTCCTTAAGACTGCTAAAGCTATCATAGATGTAGATAAAGGTTGCCTAAGTGTAGAATTTGATGGAGACATAGTGACATTTAACATTTTTGAATCTATGAAATTTCCTGAAGAATGCTTCTCTGTATACTCCTTACAATTGCATGAAAATTTTGAACAAATTCTATAATAGAACAATTTGCTAATCTAGACTTGGAAGAAATTGAAGATGATATTTGTTTGCATGAATTTAATAAAGAGGAAGAAATTGTAGAAATAGAAAATAACGAAGAAATAGACCTTGAAGGAATAGATCCTAACTCAATTTCTTTTTCTCCACAGGAACCAGGGATCGAGCTCAAGACTCTCCCCCCAAACTTGAAATACGTATTCTTAGGAGAAAAGAATACGAGTCCTGTAATAATTTCAAGGGAACTACATCAAGACCAAGAAGAAAAGCTGATCAAAGTCTTGAAGAATAAAAGAAAAGCAATAGGATGGACTTTGGAGGACCTCAAAGGTATTTCCCCTTCTTTTTGCACTCATAGAATCATTCTAGAGGAAGGAGCCAAAGACAAAGTCCAACCACAAAGGAGGCTGAACCCCATTTTGAGAGATGTCGTACTCAAAGAGATACTCAAGCTCAAAGACGCTGGGATCATCTACCCCGTTCCAGACAGCACTTGGGTAAGTCTGATCCACGTTGTGCCAAAAAAGACGGGAATGACGGTAATAGAAAATGAAAAAGGTGAAATGATCCCAACTCGAGTTCAGAACGGATGGCGAATGTGCATCGACTACCGCAAATTAAATGAGGTAACAAAGAAAGATCACTTTCCTTTACCTTTTCTAGATCAAATGATAGAAAGATTAGCTGGTAGGTCGTATTTCTGTTTTCTTGATGGCTTTTCTGGATTTTACCAAATACCAATTGCATGCGAAGATCAAAGTAAAACAACTTTTACATGCGATTACGGTACTTATGCATTTAGACGTATGCCATTTGGATTATGTAATGCACCTGGCACATTCCAACGTTGCATGATGAGTATATTTTCTGATTTTATAGAAAAATGCATAGAAGTCTTTATGGATGATTTTACTGTGTATGGTGATGATTTCGATGCATGCTTAAACAGTTTAGAACAAATTCTAAATAGATGCATAGAAACCAACTTAGTGCTTAACTATGAAAAATGTCATTTTATGGTTTCTCATGGCATAGTTTTAGGACATCTAGTATCTTCAAAAGGAATAGAAGTTGACAAAGCAAAAATAGATATTATTCAAAAATTACCCTATCCTAAATGCTTAAAAGATGTTAGATCATTTTTAGGATCAGCCGGATTTTATAGAAGATTTATTAAAAATTTCTCTAAAATTGCTTTACCACTAACTTCTCTTCTTCAGAAAGATGTACCTTTTATAATAGATGACAAATGCAAGCAAGCATTTGATGAGCTAAAATCAAGGTTAGTATCTACTCCTATACTTCAATCTCCTAACTGGAATTTACCTTTCGAAATCATGTGTGATGCTAGCAACTTAGCATTAGGAGCAGTACTAGGACAAAGAGTAGATAAGAAATTGCATGCCATTTATTATGCATCTAGAACACTTAATCAAGCACAATCAAATTACACCACCACAGAAAAAGAATTTCTTGCAATAGTCTTCGCCTTAGACAAATTTAGAAGCTATGTGATAGGCTCACCAATCATCATTTACACTGACCACGCCGCAGTTAGGTACTTAGTTTCTAAGAAAGAATCAAAACCTAGGCTAGTTAGATGGGTTTTACTTCTTCAAGAATTCAACCTAACAATTAAAGATAGAAAAGGAGCCAATAACGCCATAGCAGATCACCTAAGCAGAATAGAGCAAGAACCTGAAATTTCACCCATTAGAGAAGACTTCCCTGATGAGCATCTTTTCCAAACTGACATCTCAACACCATGGTACGCCGACCTTGTGAATTTCATAACAACAGGTAACTATCCCCCTGACTTTTCTTTTTCTCAAAAATCAAAATTATGTAGTGATGCCAAATATTACTTCTGGGAATCTCCATTCCTTTGGAAATATTGTTCTGATCAAGTAATTAGAAAATGTGTACCTGAGCATGAATTTAATTCAATTCTTTTATTTTGTCATTCTCATGCATGCGGAGGTCACTTTAGTCCAAAAAGAACTGCTAGAAAAATTTTAGATAGTGGATTTTTCTGGAAAACACTATTTTCTGATTCTTATAAATTCTGCAAAGCATGTGAAAACTGTCAAAGAACTGGATCTTTATCTAGGAGAAATGAAATGCCTTTAAATCCAATCTTAACTTGTGAAATTTTTGACATTTGGGGCATGGATTTCATGGGTCCTTTTCCTCCTTCACATGGATATCTGTACATTTTACTAGCAGTAGATTATGTATCAAAGTGGGTTGAAGCAATCCCCACTAGGACTAATGATTCTTCCACTGTTTCAGGATTTCTCATTTCTAATATCTTTTCTAGATTCGGCATCCCTCGTGCAATCATAAGCGACCAAGGAACTCACTTTTGCAATAGAACCATTGAGGCACTAATGAGAAAATACGGAGTCCACCACCGCGTTTCAACTCCGTATCATCCTCAAGCCAATGGACAAGCAGAAGCCTCAAATAAAGAAATCAAGAACATCTTGGAGAAAACAGTCAACACAAGCAGAAAAGATTGGAGCATACGCTTGAACGATGCATTGTGGGCATACCGAACTGCCTACAAAACTCCAATTGGTACATCTCCATTTAAACTTGTGTTTGGTAAGCCTTGCCATTTACCTGTAGAAATAGAACATAAAGCATATTGGGCAGTTAGGCAATGCAATTATAATCTCCTAGAGGCTAAGAATAAAAGATTCCTTGACATGCTAGAGTTAGAAGAATTAAGATTAGAAGCATATGAAAATTCTAGGATTTACAAAGAAAAGACTAGGCTTTTGCATGATAAGAAAATCCTTAGAAAACAATTTTCAATTGGACAAAAAGTGCTTCTTTACAATTCTTCTATCAATTTAATGCCTGGAAAATTAAAATCAAGATGGATAGGACCTTTTGTTATTTCTGACTTTTCTACCTTTGGCGTAGTTTCCATTAAAAGTTTACAAACAGGAAAAATTTTCAAAGTCAATGGGCATAGACTTAAAATCTTCCATGAAGGAGAGACTACTTAACAAAATTCAATAGAAATCCTCACTCTTCCTTTCTACAACTAGCCCGAAAGCACGGTCGAGCTACGACCTTAAAAACTTGCGCTTCCTGGAGGCAGCCAGGCGTCAAAATTTTAATGCTTTCTGTCTTTACTTTCTTTAAATTTTGTCTTTAAATTTCCGCATTTAATAAATCTAATAGACTTTCCAATTTTTCTTACACAGGAAATTCTTAAACAAATCCCACAATGGAGGTATAAACTCAAAGAATCAATGAGGCAACAAACAACTTTGCTTGAAAGATCTCAATTCTCAAAAGCAAGGGGAGTTCTTCTGTTCCCCTTATCTTTTAGCTAGCAATTAATATGCTTTGAGGACAAAGTCATCTTTTAAGTGAGGGGTGTTGGATAACCTTTAATTCTTGCTTTAAATGCCTTACATATCACTTGCATGTCCATAACAGAAAAAACCAAAAATGCATATCCCAAAAATTATTTCTTATCTAAATTCTTCCTAAAAGCATGAATAATACAACTTCAATATCACAAAAAGCATGCTCCAAAATTTTTTCTTTCTATATGCATATCTTTTACCTTACCCTTGGATGGATGCATGATTGAGAAAAATGAATGCTTGCTTGACTAATTGATTGCATGTACAAAATAAAAATGCATGGATGTTATTCCTTAGTAAAGTCTTATATAATGATTGCCTATGACGCACCCTTCTAAGTAATCTTTGTCTTGACTTTTAAATCGAATAAAGAACAATGTAGAAATTAAGCCTGATTTTTAAACTTTTCACCAATGACCATGAATTAGAAAAAACCCCTTTTTCTAGCCATAACGAACCTAGAATCCTTCAGAAAAGAGTAGGATGCTTAAATTCGCTTGCCATCACCTCGATAGAACGGTCAAACATCGAAACTATTAGAATAAAGCCAAGCTAAGAGTTAGCCAAACCGGGGCTAAGCAAATGCTAGCTACTAAAAATAGAATCCCAAATCAAAAGTAGCAAAAGCATACTTTTAGCAAATGGCAAAGTCCATATCCTCTCACAAAAATATAAAAATATATATAGACCTATATATATTTATATATTTACAAAAAAAAAATGATGAGAGAGAAAATCCTAGTACGGTTAAGTCGAACGATAGGATTCTTTCCGTGATCAGTTAGGATTACCCGATGTTAGTGTGGTATGAATCCCTACGGAAAAAGCCTATCCTTTGCCTTAGTAAAACAAGTTACAAACTCATTTCTGGAATTTTCTATATTAGCTTCAATGCGTTGACCGAGGGCCAAGTATAAGGAGGGATCCTTCCCGCTTCAGTGTAGAGAGAAAGCAAACCTAGGGCGTTTTTTAACTCTTTCAAAGCATGTCTAGTGCGTCGGAGTAGCAAAATTAGGCCGTTTTCTCTAAACATGACCACCGTTGATCGAAACTTTTTAAAAATCAGAGTCCTTGATCAATCGCTTGTTCCTTTAAAACATTTAAAACAAAATTCAAAGATTACTAGTATGATTGTCGAGGCATGAATATTCTACTTTGCATACTTGTTTGAAAACATCAATAAATGTTTGCATGAATGCTTGAGAAATTTAATTTTTGAAAAATCGCTTGAATACCTTGCATGGTGAATGAATGAATGTTAGCATATAAACACACTTTAATCATTACCTTAATCGGGACGATCAAGATTTAAGTGAGGGGTTTTGATAAGACTATTTTCTTAGGAAAATATCTATCTTAATTAATAATAATAAATTGCAAATACTTATTAATATTGCATTTTTGTATAGGAAATGACACAAAGCCCCTCTAACAACCCTTGTGCACGAAAATAAGCTAAAACAAGCTTATTGCGGCCAAAAGAGAAGAAATACAAACTCGAGGGCAAAATGGTAATTTTCCCGAAAGTATTCAAAAACCCTCTTCGCGGCAAAACTACTTCCGAACGCGTAGCTCATCGCAGACTACCTACTTCACGAGGCAATGCTTCATGACCAGAGCTTCGCGAAATACTTCATCTGCAGAAGTACACATTATCTTTGACGCACAACGCAAACATTCGTTCGCCAACTCACCGAATCAAGTTCAAAGCTCAAACGCATGCAACCTTCATCAGCTCGCAGAATGCATCAACTCACTTCTTCTGCTCACAACCTTCAGTTCGCCTGGGATCGGTTATCATAACCGTCAAGCCCAAGCCCACGACCCAAGCCCAATGTAACAAAATAACCGCCAAATAG

mRNA sequence

ATGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCACAAGCAACTTCATCCTCAAACAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCCACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACTAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCTCGATCATGCAAATGTAAGTGTCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGAAGAAAAGGTACCATCTATCCCTATCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATTTAGAAAACAATGCCTCTTCTTCTTCTTCAAAAGAGCTTCGCGAAATACTTCATCTGCAGAAGTACACATTATCTTTGACGCACAACGCAAACATTCGTTCGCCAACTCACCGAATCAAGTTCAAAGCTCAAACGCATGCAACCTTCATCAGCTCGCAGAATGCATCAACTCACTTCTTCTGCTCACAACCTTCAGTTCGCCTGGGATCGGTTATCATAACCGTCAAGCCCAAGCCCACGACCCAAGCCCAATGTAACAAAATAACCGCCAAATAG

Coding sequence (CDS)

ATGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCACAAGCAACTTCATCCTCAAACAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCCACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACTAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCTCGATCATGCAAATGTAAGTGTCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGAAGAAAAGGTACCATCTATCCCTATCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATTTAGAAAACAATGCCTCTTCTTCTTCTTCAAAAGAGCTTCGCGAAATACTTCATCTGCAGAAGTACACATTATCTTTGACGCACAACGCAAACATTCGTTCGCCAACTCACCGAATCAAGTTCAAAGCTCAAACGCATGCAACCTTCATCAGCTCGCAGAATGCATCAACTCACTTCTTCTGCTCACAACCTTCAGTTCGCCTGGGATCGGTTATCATAACCGTCAAGCCCAAGCCCACGACCCAAGCCCAATGTAACAAAATAACCGCCAAATAG

Protein sequence

MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQLDHANVSVISLRSGKILETPPSEEKVPSIPILLVDENKKKEENLENNASSSSSKELREILHLQKYTLSLTHNANIRSPTHRIKFKAQTHATFISSQNASTHFFCSQPSVRLGSVIITVKPKPTTQAQCNKITAK
Homology
[Close]
BLAST of PI0028110 vs. ExPASy TrEMBL
Match: A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 2.2e-60
Identity = 116/168 (69.05%), Postives = 145/168 (86.31%), Query Frame = 0 

Query: 1   MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQ 60
           +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  Q
Sbjct: 221 LKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHTQ 280

Query: 61  ATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQLDHANVS 120
           A S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPAQLDHANVS
Sbjct: 281 APSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQLDHANVS 340

Query: 121 VISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK 168
            ISLRSGKIL+TP + E+KV S P+ L  +N+ KEE +E N S S+SK
Sbjct: 341 AISLRSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSK 388

[Close]
BLAST of PI0028110 vs. ExPASy TrEMBL
Match: A0A5D3DCG3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold860G00100 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 115/168 (68.45%), Postives = 142/168 (84.52%), Query Frame = 0 

Query: 1   MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQ 60
           +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  Q
Sbjct: 14  LKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQKHTQ 73

Query: 61  ATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQLDHANVS 120
           A  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  ISK++GKGKL AQ DHANVS
Sbjct: 74  APPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGKGKLLAQPDHANVS 133

Query: 121 VISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK 168
           VISLRS KIL+TP + E+KV S P+ L  +N+ KEE  E N S S+SK
Sbjct: 134 VISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNSK 181

[Close]
BLAST of PI0028110 vs. ExPASy TrEMBL
Match: A0A1S4E3R2 (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 115/168 (68.45%), Postives = 142/168 (84.52%), Query Frame = 0 

Query: 1   MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQ 60
           +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  Q
Sbjct: 14  LKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQKHTQ 73

Query: 61  ATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQLDHANVS 120
           A  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  ISK++GKGKL AQ DHANVS
Sbjct: 74  APPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGKGKLLAQPDHANVS 133

Query: 121 VISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK 168
           VISLRS KIL+TP + E+KV S P+ L  +N+ KEE  E N S S+SK
Sbjct: 134 VISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNSK 181

[Close]
BLAST of PI0028110 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 113/168 (67.26%), Postives = 143/168 (85.12%), Query Frame = 0 

Query: 1   MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQ 60
           +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  Q
Sbjct: 155 LKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGNDNQKHTQ 214

Query: 61  ATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQLDHANVS 120
           A S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKL AQ ++ANVS
Sbjct: 215 APSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLSAQSNYANVS 274

Query: 121 VISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK 168
            +SLRSGKIL+TP + E+K  S P+ L  +N+ KEE +E N S  +SK
Sbjct: 275 AVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIETNPSPYNSK 322

[Close]
BLAST of PI0028110 vs. ExPASy TrEMBL
Match: A0A1S3CQU8 (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.7e-58
Identity = 113/168 (67.26%), Postives = 142/168 (84.52%), Query Frame = 0 

Query: 1   MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQ 60
           +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGND Q+  Q
Sbjct: 69  LKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNPNLRWGNDNQKHTQ 128

Query: 61  ATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQLDHANVS 120
           A  +S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT  ISK++GKGKLPAQ DH NVS
Sbjct: 129 APPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGKGKLPAQPDHVNVS 188

Query: 121 VISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK 168
            ISLRSGKIL+TP + E+KV S  + L  +N+ KEE +E N+SSS+SK
Sbjct: 189 AISLRSGKILDTPTTKEKKVTSKLLPLNSKNQSKEEKVETNSSSSNSK 236

[Close]
BLAST of PI0028110 vs. NCBI nr
Match: KAA0067359.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 4.5e-60
Identity = 116/168 (69.05%), Postives = 145/168 (86.31%), Query Frame = 0 

Query: 1   MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQ 60
           +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  Q
Sbjct: 221 LKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHTQ 280

Query: 61  ATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQLDHANVS 120
           A S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPAQLDHANVS
Sbjct: 281 APSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQLDHANVS 340

Query: 121 VISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK 168
            ISLRSGKIL+TP + E+KV S P+ L  +N+ KEE +E N S S+SK
Sbjct: 341 AISLRSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSK 388

[Close]
BLAST of PI0028110 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-58
Identity = 115/168 (68.45%), Postives = 142/168 (84.52%), Query Frame = 0 

Query: 1   MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQ 60
           +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  Q
Sbjct: 14  LKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQKHTQ 73

Query: 61  ATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQLDHANVS 120
           A  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  ISK++GKGKL AQ DHANVS
Sbjct: 74  APPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGKGKLLAQPDHANVS 133

Query: 121 VISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK 168
           VISLRS KIL+TP + E+KV S P+ L  +N+ KEE  E N S S+SK
Sbjct: 134 VISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNSK 181

[Close]
BLAST of PI0028110 vs. NCBI nr
Match: KAA0051761.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-58
Identity = 115/168 (68.45%), Postives = 142/168 (84.52%), Query Frame = 0 

Query: 1   MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQ 60
           +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  Q
Sbjct: 14  LKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQKHTQ 73

Query: 61  ATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQLDHANVS 120
           A  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  ISK++GKGKL AQ DHANVS
Sbjct: 74  APPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGKGKLLAQPDHANVS 133

Query: 121 VISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK 168
           VISLRS KIL+TP + E+KV S P+ L  +N+ KEE  E N S S+SK
Sbjct: 134 VISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNSK 181

[Close]
BLAST of PI0028110 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 3.2e-58
Identity = 113/168 (67.26%), Postives = 143/168 (85.12%), Query Frame = 0 

Query: 1   MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQ 60
           +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  Q
Sbjct: 155 LKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGNDNQKHTQ 214

Query: 61  ATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQLDHANVS 120
           A S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKL AQ ++ANVS
Sbjct: 215 APSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLSAQSNYANVS 274

Query: 121 VISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK 168
            +SLRSGKIL+TP + E+K  S P+ L  +N+ KEE +E N S  +SK
Sbjct: 275 AVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIETNPSPYNSK 322

[Close]
BLAST of PI0028110 vs. NCBI nr
Match: XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 5.5e-58
Identity = 113/168 (67.26%), Postives = 142/168 (84.52%), Query Frame = 0 

Query: 1   MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQ 60
           +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGND Q+  Q
Sbjct: 69  LKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNPNLRWGNDNQKHTQ 128

Query: 61  ATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQLDHANVS 120
           A  +S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT  ISK++GKGKLPAQ DH NVS
Sbjct: 129 APPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGKGKLPAQPDHVNVS 188

Query: 121 VISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK 168
            ISLRSGKIL+TP + E+KV S  + L  +N+ KEE +E N+SSS+SK
Sbjct: 189 AISLRSGKILDTPTTKEKKVTSKLLPLNSKNQSKEEKVETNSSSSNSK 236

The following BLAST results are available for this feature:
BLAST of PI0028110 vs.
Match NameE-valueIdentityDescription
BLAST of PI0028110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VQ602.2e-6069.05Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3DCG31.2e-5868.45Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A1S4E3R21.2e-5868.45uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=... [more]
A0A5D3CRR81.6e-5867.26Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A1S3CQU82.7e-5867.26uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=... [more]
BLAST of PI0028110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067359.14.5e-6069.05retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotranspos... [more]
XP_016902871.12.5e-5868.45PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo][more]
KAA0051761.12.5e-5868.45retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotranspos... [more]
KAA0047407.13.2e-5867.26retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... [more]
XP_008465649.15.5e-5867.26PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo][more]
BLAST of PI0028110 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 87..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028110.1PI0028110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding