PI0027976 (gene) Melon (PI 482460) v1

Overview


Name	PI0027976
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr03: 14292460 .. 14292750 (+)
RNA-Seq Expression	PI0027976
Synteny	PI0027976

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTCTGGAAAGACGGTACAAGGGAGAGGAATGTGCAAAGGAGTTACGGTCGGATTGCCAGTAATGACCATAGTAGATGATTTCCTTCCGTTAGAACTTGGAAATTTAGACATGGTGTTGGGTATGCAGTGGTTGCGTAAACAGGGGGTTATGGCAGTCGATTGGAGGGAGTTGATAATGACCTTCTCAGTAGGTGAGACTCGAGTAGTCCTCAAAGGGGATCCATCCTTATCTCGAATGGAGGTGTCATTTAAGATGCTGACTAAAACGTGGCAACCGGAGGACTAG

mRNA sequence

ATGGGGTCTGGAAAGACGGTACAAGGGAGAGGAATGTGCAAAGGAGTTACGGTCGGATTGCCAGTAATGACCATAGTAGATGATTTCCTTCCGTTAGAACTTGGAAATTTAGACATGGTGTTGGGTATGCAGTGGTTGCGTAAACAGGGGGTTATGGCAGTCGATTGGAGGGAGTTGATAATGACCTTCTCAGTAGGTGAGACTCGAGTAGTCCTCAAAGGGGATCCATCCTTATCTCGAATGGAGGTGTCATTTAAGATGCTGACTAAAACGTGGCAACCGGAGGACTAG

Coding sequence (CDS)

ATGGGGTCTGGAAAGACGGTACAAGGGAGAGGAATGTGCAAAGGAGTTACGGTCGGATTGCCAGTAATGACCATAGTAGATGATTTCCTTCCGTTAGAACTTGGAAATTTAGACATGGTGTTGGGTATGCAGTGGTTGCGTAAACAGGGGGTTATGGCAGTCGATTGGAGGGAGTTGATAATGACCTTCTCAGTAGGTGAGACTCGAGTAGTCCTCAAAGGGGATCCATCCTTATCTCGAATGGAGGTGTCATTTAAGATGCTGACTAAAACGTGGCAACCGGAGGACTAG

Protein sequence

MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELGNLDMVLGMQWLRKQGVMAVDWRELIMTFSVGETRVVLKGDPSLSRMEVSFKMLTKTWQPED

Homology

[Close]

BLAST of PI0027976 vs. ExPASy TrEMBL
Match: A0A5A7UPE1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001610 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.0e-37
Identity = 74/96 (77.08%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELGNLDMVLGMQWLRKQGVMAVDWRELI 60
           MGSGK VQGRGMCKG+TVGLPV++IV+DFLPLELGN+DMVLGMQWL+KQG M VDW+ L 
Sbjct: 197 MGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLGMQWLQKQGAMTVDWKALT 256

Query: 61  MTFSVGETRVVLKGDPSLSRMEVSFKMLTKTWQPED 97
           MTF VG+T+V+LKGDPSL+RME+S K+L KTWQP+D
Sbjct: 257 MTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDD 292

[Close]

BLAST of PI0027976 vs. ExPASy TrEMBL
Match: A0A5D3BIM8 (Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001530 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 73/96 (76.04%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELGNLDMVLGMQWLRKQGVMAVDWRELI 60
           MGSGK VQGRGMCKG+TVGLPV+T+V+DFLPL+LGN+DMVLGMQWL+KQG M VDW+ L 
Sbjct: 11  MGSGKAVQGRGMCKGITVGLPVITVVEDFLPLKLGNVDMVLGMQWLQKQGAMTVDWKALT 70

Query: 61  MTFSVGETRVVLKGDPSLSRMEVSFKMLTKTWQPED 97
           MTF VG+T+V+LKGDPSL+RME+S K+L KTWQP+D
Sbjct: 71  MTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDD 106

[Close]

BLAST of PI0027976 vs. ExPASy TrEMBL
Match: A0A5D3BD16 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001350 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-37
Identity = 73/96 (76.04%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELGNLDMVLGMQWLRKQGVMAVDWRELI 60
           MGSGK VQGRG+CKG+TVGLPV++IV+DFLPLELGN+DMVLGMQWL+KQG M VDW+ L 
Sbjct: 441 MGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDMVLGMQWLQKQGAMTVDWKALT 500

Query: 61  MTFSVGETRVVLKGDPSLSRMEVSFKMLTKTWQPED 97
           MTF VG+T+V+LKGDPSL+RME+S K+L KTWQP+D
Sbjct: 501 MTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDD 536

[Close]

BLAST of PI0027976 vs. ExPASy TrEMBL
Match: A0A5D3CEX8 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00690 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-37
Identity = 73/96 (76.04%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELGNLDMVLGMQWLRKQGVMAVDWRELI 60
           MGSGK VQGRG+CKG+TVGLPV++IV+DFLPLELGN+DMVLGMQWL+KQG M VDW+ L 
Sbjct: 441 MGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDMVLGMQWLQKQGAMTVDWKALT 500

Query: 61  MTFSVGETRVVLKGDPSLSRMEVSFKMLTKTWQPED 97
           MTF VG+T+V+LKGDPSL+RME+S K+L KTWQP+D
Sbjct: 501 MTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDD 536

[Close]

BLAST of PI0027976 vs. ExPASy TrEMBL
Match: A0A5A7T606 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00810 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-37
Identity = 73/96 (76.04%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELGNLDMVLGMQWLRKQGVMAVDWRELI 60
           MGSGK VQGRG+CKG+TVGLPV++IV+DFLPLELGN+DMVLGMQWL+KQG M VDW+ L 
Sbjct: 441 MGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDMVLGMQWLQKQGAMTVDWKALT 500

Query: 61  MTFSVGETRVVLKGDPSLSRMEVSFKMLTKTWQPED 97
           MTF VG+T+V+LKGDPSL+RME+S K+L KTWQP+D
Sbjct: 501 MTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDD 536

[Close]

BLAST of PI0027976 vs. NCBI nr
Match: KAA0056980.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 74/96 (77.08%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELGNLDMVLGMQWLRKQGVMAVDWRELI 60
           MGSGK VQGRGMCKG+TVGLPV++IV+DFLPLELGN+DMVLGMQWL+KQG M VDW+ L 
Sbjct: 197 MGSGKAVQGRGMCKGITVGLPVISIVEDFLPLELGNIDMVLGMQWLQKQGAMTVDWKALT 256

Query: 61  MTFSVGETRVVLKGDPSLSRMEVSFKMLTKTWQPED 97
           MTF VG+T+V+LKGDPSL+RME+S K+L KTWQP+D
Sbjct: 257 MTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDD 292

[Close]

BLAST of PI0027976 vs. NCBI nr
Match: TYJ98541.1 (pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 3.5e-37
Identity = 73/96 (76.04%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELGNLDMVLGMQWLRKQGVMAVDWRELI 60
           MGSGK VQGRGMCKG+TVGLPV+T+V+DFLPL+LGN+DMVLGMQWL+KQG M VDW+ L 
Sbjct: 11  MGSGKAVQGRGMCKGITVGLPVITVVEDFLPLKLGNVDMVLGMQWLQKQGAMTVDWKALT 70

Query: 61  MTFSVGETRVVLKGDPSLSRMEVSFKMLTKTWQPED 97
           MTF VG+T+V+LKGDPSL+RME+S K+L KTWQP+D
Sbjct: 71  MTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDD 106

[Close]

BLAST of PI0027976 vs. NCBI nr
Match: KAA0036997.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 73/96 (76.04%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELGNLDMVLGMQWLRKQGVMAVDWRELI 60
           MGSGK VQGRG+CKG+TVGLPV++IV+DFLPLELGN+DMVLGMQWL+KQG M VDW+ L 
Sbjct: 441 MGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDMVLGMQWLQKQGAMTVDWKALT 500

Query: 61  MTFSVGETRVVLKGDPSLSRMEVSFKMLTKTWQPED 97
           MTF VG+T+V+LKGDPSL+RME+S K+L KTWQP+D
Sbjct: 501 MTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDD 536

[Close]

BLAST of PI0027976 vs. NCBI nr
Match: TYK21209.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 73/96 (76.04%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELGNLDMVLGMQWLRKQGVMAVDWRELI 60
           MGSGK VQGRG+CKG+TVGLPV++IV+DFLPLELGN+DMVLGMQWL+KQG M VDW+ L 
Sbjct: 441 MGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDMVLGMQWLQKQGAMTVDWKALT 500

Query: 61  MTFSVGETRVVLKGDPSLSRMEVSFKMLTKTWQPED 97
           MTF VG+T+V+LKGDPSL+RME+S K+L KTWQP+D
Sbjct: 501 MTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDD 536

[Close]

BLAST of PI0027976 vs. NCBI nr
Match: TYK17386.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 73/96 (76.04%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELGNLDMVLGMQWLRKQGVMAVDWRELI 60
           MGSGK VQGRG+CKG+TVGLPV++IV+DFLPLELGN+DMVLGMQWL+KQG M VDW+ L 
Sbjct: 441 MGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDMVLGMQWLQKQGAMTVDWKALT 500

Query: 61  MTFSVGETRVVLKGDPSLSRMEVSFKMLTKTWQPED 97
           MTF VG+T+V+LKGDPSL+RME+S K+L KTWQP+D
Sbjct: 501 MTFVVGDTKVILKGDPSLTRMEISLKVLVKTWQPDD 536

[Close]

BLAST of PI0027976 vs. TAIR 10
Match: AT3G29750.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 26/98 (26.53%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 1   MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELG--NLDMVLGMQWLRKQGVMAVDWRE 60
           +G  + +Q  G C G+ + +  + I ++FL L+L   ++D++LG +WL K G   V+W+ 
Sbjct: 170 LGQRQCIQSVGTCLGIRLWVQEVEITENFLLLDLAKTDVDVILGYEWLSKLGETMVNWQN 229

Query: 61  LIMTFSVGETRVVLKGD-PSLSRMEVSFKMLTKTWQPE 96
              +FS  +  + L  +   L ++    KM ++  Q +
Sbjct: 230 QDFSFSHNQQWITLCAEHEELEQVTTKVKMKSENEQED 267

[Close]

BLAST of PI0027976 vs. TAIR 10
Match: AT1G53705.1 (aminoacyl-tRNA ligases;nucleotide binding;ATP binding )

HSP 1 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 19/57 (33.33%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 1  MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELG--NLDMVLGMQWLRKQGVMAVD 56
          MG G+ ++ +G C G+++ +    IV+D+L L+L   + D++LG +WL K G   ++
Sbjct: 1  MGHGQHIESKGSCLGISLWIQEAAIVEDYLLLDLNKTDADVILGYKWLSKLGETMIE 57

[Close]

BLAST of PI0027976 vs. TAIR 10
Match: AT1G53705.2 (aminoacyl-tRNA ligases;nucleotide binding;ATP binding )

HSP 1 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 19/57 (33.33%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 1  MGSGKTVQGRGMCKGVTVGLPVMTIVDDFLPLELG--NLDMVLGMQWLRKQGVMAVD 56
          MG G+ ++ +G C G+++ +    IV+D+L L+L   + D++LG +WL K G   ++
Sbjct: 1  MGHGQHIESKGSCLGISLWIQEAAIVEDYLLLDLNKTDADVILGYKWLSKLGETMIE 57

The following BLAST results are available for this feature:

BLAST of PI0027976 vs.


Match Name	E-value	Identity	Description

BLAST of PI0027976 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UPE1	1.0e-37	77.08	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BIM8	1.7e-37	76.04	Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3BD16	2.9e-37	76.04	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CEX8	2.9e-37	76.04	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T606	2.9e-37	76.04	Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of PI0027976 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056980.1	2.1e-37	77.08	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ98541.1	3.5e-37	76.04	pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa]	[more]
KAA0036997.1	6.0e-37	76.04	gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]	[more]
TYK21209.1	6.0e-37	76.04	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK17386.1	6.0e-37	76.04	gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of PI0027976 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29750.1	1.7e-05	26.53	Eukaryotic aspartyl protease family protein	[more]
AT1G53705.1	1.4e-04	33.33	aminoacyl-tRNA ligases;nucleotide binding;ATP binding	[more]
AT1G53705.2	1.4e-04	33.33	aminoacyl-tRNA ligases;nucleotide binding;ATP binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 1..73 e-value: 2.0E-5 score: 26.5
None	No IPR available	PFAM	PF08284	RVP_2	coord: 5..52 e-value: 1.1E-5 score: 25.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027976.1	PI0027976.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity