PI0027970 (gene) Melon (PI 482460) v1

Overview


Name	PI0027970
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Polyprotein
Location	chr11: 26366361 .. 26366983 (-)
RNA-Seq Expression	PI0027970
Synteny	PI0027970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAATGGTTCGCAGAGAATGGATATTTTCAAGACATTGATCAAAGAAAGAATGCAGAGTTCTTAAATGATAAATCTAAACTTCTTGCAGTGCTGACACAGGCAACAACTGATGCTGACTTTCAAAGATTATTATCAACTGCAGTAAACTCTTCTTCAAGTTCCAAATCAGCATCCTCTTTCATACAGGAAGATGAAGAATTAGCAAGTCTAAAGTATGATTTAAACGACCCATTTCTCGACTCACAACCTATGTGAGCTCCGAATCCAAATACCTGTTTAAAAAAGAAATAGGATCCATATAAGAGTCTTCAAAAGAAAGATATCTATTCAAAATTATTATTGTTATTATTGTTATAAAAAAAAATTGTATAATCGCATCTCTAGTGTAATCAATGAGTAAACTTTGTACTTATTCTAGTTTACTCAGTAAATATTGTTCCGTCATCCAGAAATCCAGGAGAAAATTGAAGACAACAAAGCATAAAGTCTACGAACAAAAAGAAATTGTGTATTTCATGGAGTGTTCGACTACGTTTAATGGTCCCGACAGTAAGTTGCAGATTAGGCACGATGAATCCATTGGTCAGTCTATAATCCGCCGTAGAGAATACGATTAA

mRNA sequence

ATGAAGGAATGGTTCGCAGAGAATGGATATTTTCAAGACATTGATCAAAGAAAGAATGCAGAGTTCTTAAATGATAAATCTAAACTTCTTGCAGTGCTGACACAGGCAACAACTGATGCTGACTTTCAAAGATTATTATCAACTGCAGTAAACTCTTCTTCAAGTTCCAAATCAGCATCCTCTTTCATACAGGAAGATGAAGAATTAGCAAGTCTAAATAAATATTGTTCCGTCATCCAGAAATCCAGGAGAAAATTGAAGACAACAAAGCATAAAGTCTACGAACAAAAAGAAATTGTGTATTTCATGGAGTGTTCGACTACGTTTAATGGTCCCGACAGTAAGTTGCAGATTAGGCACGATGAATCCATTGGTCAGTCTATAATCCGCCGTAGAGAATACGATTAA

Coding sequence (CDS)

ATGAAGGAATGGTTCGCAGAGAATGGATATTTTCAAGACATTGATCAAAGAAAGAATGCAGAGTTCTTAAATGATAAATCTAAACTTCTTGCAGTGCTGACACAGGCAACAACTGATGCTGACTTTCAAAGATTATTATCAACTGCAGTAAACTCTTCTTCAAGTTCCAAATCAGCATCCTCTTTCATACAGGAAGATGAAGAATTAGCAAGTCTAAATAAATATTGTTCCGTCATCCAGAAATCCAGGAGAAAATTGAAGACAACAAAGCATAAAGTCTACGAACAAAAAGAAATTGTGTATTTCATGGAGTGTTCGACTACGTTTAATGGTCCCGACAGTAAGTTGCAGATTAGGCACGATGAATCCATTGGTCAGTCTATAATCCGCCGTAGAGAATACGATTAA

Protein sequence

MKEWFAENGYFQDIDQRKNAEFLNDKSKLLAVLTQATTDADFQRLLSTAVNSSSSSKSASSFIQEDEELASLNKYCSVIQKSRRKLKTTKHKVYEQKEIVYFMECSTTFNGPDSKLQIRHDESIGQSIIRRREYD

Homology

[Close]

BLAST of PI0027970 vs. ExPASy TrEMBL
Match: A0A5A7SWC0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00570 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MKEWFAENGYFQDIDQRKNAEFLNDKSKLLAVLTQATTDADFQRLLSTAVNSSSSSKSAS 60
          +KEWFAEN Y QDIDQRKN EFLNDKSKLL  L QATTDADFQRLLSTAVN+SSSSKS S
Sbjct: 24 IKEWFAENKYLQDIDQRKNVEFLNDKSKLLVALAQATTDADFQRLLSTAVNASSSSKSPS 83

Query: 61 SFIQEDEE 69
          S IQEDEE
Sbjct: 84 SSIQEDEE 91

[Close]

BLAST of PI0027970 vs. ExPASy TrEMBL
Match: A0A5A7SNT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001890 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.9e-19
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MKEWFAENGYFQDIDQRKNAEFLNDKSKLLAVLTQATTDADFQRLLSTAVNSSSSSKSAS 60
           +KEWF ENGY QDIDQ KN +FLN+KSKLLA L QATTDADFQRLL T VN+S+SSKS S
Sbjct: 59  IKEWFVENGYLQDIDQGKNVKFLNEKSKLLATLAQATTDADFQRLLPTTVNASTSSKSTS 118

Query: 61  SFIQEDEE 69
           SF+QEDEE
Sbjct: 119 SFLQEDEE 126

[Close]

BLAST of PI0027970 vs. ExPASy TrEMBL
Match: A0A5D3BI61 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00950 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 5   FAENGYFQDIDQRKNAEFLNDKSKLLAVLTQATTDADFQRLLSTAVNSSSSSKSASSFIQ 64
           + +NG  QDIDQRKNA+FLNDK K LA L QAT DADFQRLLSTAVN+SSSSK A SFIQ
Sbjct: 139 YQKNGDLQDIDQRKNAKFLNDKLKFLAALVQATIDADFQRLLSTAVNTSSSSKPAPSFIQ 198

Query: 65  EDEELASL 73
           EDEE   L
Sbjct: 199 EDEEQVDL 206

[Close]

BLAST of PI0027970 vs. ExPASy TrEMBL
Match: A0A0A0KYU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G427780 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.1e-13
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MKEWFAENGYFQDIDQRKNAEFLNDKSKLLAVLTQATTDADFQRLLST 49
          MKEWFAEN Y QDIDQRKN EFLNDKSKLLA+L QATTD +FQRLLST
Sbjct: 27 MKEWFAENNYLQDIDQRKNIEFLNDKSKLLALLAQATTDTNFQRLLST 74

[Close]

BLAST of PI0027970 vs. ExPASy TrEMBL
Match: A0A5A7UZX0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00530 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.6e-11
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   MKEWFAENGYFQDIDQRKNAEFLNDKSKLLAVLTQATTDADF 43
           +KEWFA+NGY QDIDQRKN EFLNDKSKLLA L QATTDADF
Sbjct: 90  IKEWFADNGYLQDIDQRKNIEFLNDKSKLLAALAQATTDADF 131

[Close]

BLAST of PI0027970 vs. NCBI nr
Match: KAA0034823.1 (hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-20
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MKEWFAENGYFQDIDQRKNAEFLNDKSKLLAVLTQATTDADFQRLLSTAVNSSSSSKSAS 60
          +KEWFAEN Y QDIDQRKN EFLNDKSKLL  L QATTDADFQRLLSTAVN+SSSSKS S
Sbjct: 24 IKEWFAENKYLQDIDQRKNVEFLNDKSKLLVALAQATTDADFQRLLSTAVNASSSSKSPS 83

Query: 61 SFIQEDEE 69
          S IQEDEE
Sbjct: 84 SSIQEDEE 91

[Close]

BLAST of PI0027970 vs. NCBI nr
Match: KAA0025901.1 (hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 8.0e-19
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MKEWFAENGYFQDIDQRKNAEFLNDKSKLLAVLTQATTDADFQRLLSTAVNSSSSSKSAS 60
           +KEWF ENGY QDIDQ KN +FLN+KSKLLA L QATTDADFQRLL T VN+S+SSKS S
Sbjct: 59  IKEWFVENGYLQDIDQGKNVKFLNEKSKLLATLAQATTDADFQRLLPTTVNASTSSKSTS 118

Query: 61  SFIQEDEE 69
           SF+QEDEE
Sbjct: 119 SFLQEDEE 126

[Close]

BLAST of PI0027970 vs. NCBI nr
Match: TYJ98361.1 (hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-15
Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 5   FAENGYFQDIDQRKNAEFLNDKSKLLAVLTQATTDADFQRLLSTAVNSSSSSKSASSFIQ 64
           + +NG  QDIDQRKNA+FLNDK K LA L QAT DADFQRLLSTAVN+SSSSK A SFIQ
Sbjct: 139 YQKNGDLQDIDQRKNAKFLNDKLKFLAALVQATIDADFQRLLSTAVNTSSSSKPAPSFIQ 198

Query: 65  EDEELASL 73
           EDEE   L
Sbjct: 199 EDEEQVDL 206

[Close]

BLAST of PI0027970 vs. NCBI nr
Match: XP_031739746.1 (uncharacterized protein LOC116403279 [Cucumis sativus] >KAE8649669.1 hypothetical protein Csa_012459 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 8.5e-13
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MKEWFAENGYFQDIDQRKNAEFLNDKSKLLAVLTQATTDADFQRLLST 49
          MKEWFAEN Y QDIDQRKN EFLNDKSKLLA+L QATTD +FQRLLST
Sbjct: 34 MKEWFAENNYLQDIDQRKNIEFLNDKSKLLALLAQATTDTNFQRLLST 81

[Close]

BLAST of PI0027970 vs. NCBI nr
Match: KAA0059031.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-10
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   MKEWFAENGYFQDIDQRKNAEFLNDKSKLLAVLTQATTDADF 43
           +KEWFA+NGY QDIDQRKN EFLNDKSKLLA L QATTDADF
Sbjct: 90  IKEWFADNGYLQDIDQRKNIEFLNDKSKLLAALAQATTDADF 131

The following BLAST results are available for this feature:

BLAST of PI0027970 vs.


Match Name	E-value	Identity	Description

BLAST of PI0027970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWC0	1.6e-20	85.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SNT5	3.9e-19	77.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BI61	1.5e-15	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KYU0	4.1e-13	85.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G427780 PE=4 SV=1	[more]
A0A5A7UZX0	6.6e-11	85.71	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00530 PE...	[more]

BLAST of PI0027970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034823.1	3.2e-20	85.29	hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]	[more]
KAA0025901.1	8.0e-19	77.94	hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]	[more]
TYJ98361.1	3.1e-15	75.00	hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]	[more]
XP_031739746.1	8.5e-13	85.42	uncharacterized protein LOC116403279 [Cucumis sativus] >KAE8649669.1 hypothetica...	[more]
KAA0059031.1	1.4e-10	85.71	polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of PI0027970 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027970.1	PI0027970.1	mRNA