PI0027966 (gene) Melon (PI 482460) v1

Overview


Name	PI0027966
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr09: 13013929 .. 13017389 (+)
RNA-Seq Expression	PI0027966
Synteny	PI0027966

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAGGTCAGTCGAACATGCTTGGAATTTTACCATTTCTCATCCGAATTTCGAAAGAGTCATTACTTTGGTAAGAATAATAGTCCTTCTCGCATACTTTGAGAGGTAAAAGTTTTCTTTATCACCTTCTACATTCTGATTGTGTACTGTCCCTTTCACAATTATTCTGAATTACATAGTAGTTTAGTTTTCTAGGCCCTAAACTACTTTTGTTATAATTCCTCATTTCGCATAGAGCGCTGAGTCATAATTAAATTGTGAATTGCTTGTCATGCTTGATTACCGAGTGGCCAGTTAATAAGTTCATTTTGCTCCTCTCGCATGATAACACTACGGTACGCTTTAATTTTGCTAAGTATACGCTAAGTTGCTTAGTGAATCTTGAATGTTCTACGCGTTTTAATTAGAACCAATCTTAATCACTGAGATGAAATTTTTTTCTGGTTAAACTTTCTCGCCTATCTGTTTAAAGCTTTAACTCTAAATGCGTTGTGACCACTGAGGCATCAATTCATCTAGACTAATTCTTGCATCCCTAATCGCATATCTCTCTTTGTAATAAGGACAGATCGCTGAGACAGTTCCTTATTACAATTAGAGGTATCTCTTATCGCATAGTCCATTCTCGCGAGTTCTCTTAAAGAAGTGCATCTTTAAATACTTTTACTTCTGTGATAAGCATGCGTAGTTAGAATTGTTACCTCTTACCGCATACTACATTCTATAGGGAAAACAAAAAAATTCTATAGATTCTTAATCCACTTTCTGTCTCATTCCACATTTCTTTACCGCTTTCATTTTTCTTTTCTTTTCGCACACTACAAAACCCCCCCTATTACTAATCATTTTCGTGTCTTGAAGCTATCACTTTACTTTAAACCTATCACTGATTAGAAAGCGCAGCTCGCTCCCTTGGGTACGACAACTCTTCTAAAAAACTATACTTACCACTACATCTAATTTCGAACAAAAATGGCGCCGTTGCCGGGGAGCGACGGTAAGTTTTTCTAAATCCTTTTAGGTTTAAATTTTTCTTTTTAGCTTCTTGATTCTATATTCAATATCTAAAAAAATTCTTTAAAACCAAAAAGAGAAAGTTATTTGATATTCTTTTCCTCTTCCTTACCTTGCATGTCTCGTTCTTCCAATCCTCAATTACATTTCTTTGAAGACCTCAATAGGGAAGTGCTAGAATTAGGAGAGAAAGGAGAGAAGAAATTAACCAAAATATTCCTCAAGAACCATTAGATAACCAAGAGCCTACCTTAGAGAACCAAACCTTTATAGAGAAGCCATGGGCCAAGTTAGAGAGAAAACCTTAAGAGAGCTTTCTAAGCCTGACGAAGACCAAAGGCCCCTCTGTATAGTTATTCCCCCAACAACTCAACCCTTCGAACTAAAACCTAGACTAATCCATCTCTTACCTATATACAAGGGTAGTTCAGGAGAGGACCCCCATAAACACCTCAAAGACTTTCATATGGTTTGTGACTCAATGAGACCCCACAGAGTTTTAGAGGAACAACTTAACCTGAGAGCCTTTCCTTTTTCTTTAACCGATACAGCCAAAAGGTGGCTTTACTACCTAGAGCCAGGGTCTATCACCACTTGGGGAGTTCTTAAAAAGAAGTTCCTAGAAAAGTTCTTCCCTACTTCTAGAGCAAATAATATTGGGAAGGAAATCTACGGAATTAGGCAAGCCTTTGGGGAGTCATTGTCAGAATACTGGGAGCGATTTAAGGAGCTCTGCGCTAGCTTCCCCCATCACCATATTTCTGATCCTTCACTTATACAGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCTTTAGCTGACAAGACCCCTATTGAAGCTAGAGAGCTCATTTCAAGGATGGCTGAAAATTCACAGAATTTTGGCAACAGAGCATCCGAGCTCGACAATTCATTAACAAAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTTTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAAGTCGTTAAGTGCGGGGTTTGCGGTCTAGTTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACATACAACACCGGTTGGAGAGACAACCCTAATCTTAGATGGGGAAACGATAACCAAAGACCCGCGCAAGCAACTTCATCTTCAAACAATCAAGGTACTAATTTGGAAGACTTAGTTAAAGCTCTTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAGCAAATATCTCAACTAACAAATGCCATAAGCAAACTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTCAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGCGAAGAAAAGGTAACTTCTACCCCTGACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAATCAGAAACAAGTACTTCACCATCTTCATTAAAAGGTAAAAAACATGTTATAGATTATTCTCCACATATCCCTAATGCTCCTTTTCCTTCCAGGTTAGCCCCTAAAAAGAAAGAATCGCCGAAGGAAGAAGAACTTCTGGAGATGTTCAGAAAAGTGCAAATAAACCTGCCTCTACTTGATGCGATCCAGCAAGTCCCGAGGTATGCGAAGTTCCTAAAAGAATTATGCACCAACAAGAGAAAAATCAAAGAACAACCGATGGTAAGTCACAACGTTTCTGCTCTTCTTAAAACTTCAATACCTGCAAAACAGAACGATCCAGGTATGTTTTCTCTTCCTTGTATTATAGGAAATAGACCAATTTCAAATGCAATGCTAGACTTAGGAGCCTCGATTAATGTCATGCCTTACTCTGTTTTCAAAGATTTAGAATTAAATAATCTGCAAAAAACAAATGTATGCATTCAACTTGCTGATAGATCTTTCATATCACCGCTAGGAATAGTTGAAGATGTGCTAGTTAAAGTAGATAAGCTAATATTTCCTGCGGACTTCTATATTCTAGAAATGAATAATGCATTCTCTAAACCCTCCCATTCGATTCCTCTAGGAAGACCTTTCCTTAAGACTGCTAAAGCTATCATTGATGTAGATAAAGGTTGTCTTAGTGTAGAATTCGATGGAGATGTTGTGACATTTAATATTTTTGAATCCATGAAATATCCTGAAGAATGTCTTTCTTTATGCTCCTTAGAATTGCATGATGAATTTGATCAATTGCCTATGAATAATGAATTTGCTAAACAAGAGTTAGATGAAATAGAAGAAGATATTTGTTTGCATGAATTGAATGAAGAAAAAGAGATAGTAGAAGTAGAAATGAATGAAGAATTAAATCTTGATGGAATAGATCCTAACACTTTTTCTTTTTCTCCACAGGAACCAGGAATTGA

mRNA sequence

ATGCCTAGGTCAGTCGAACATGCTTGGAATTTTACCATTTCTCATCCGAATTTCGAAAGAGTCATTACTTTGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCTTTAGCTGACAAGACCCCTATTGAAGCTAGAGAGCTCATTTCAAGGATGGCTGAAAATTCACAGAATTTTGGCAACAGAGCATCCGAGCTCGACAATTCATTAACAAAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTTTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAAGTCGTTAAGTGCGGGGTTTGCGGTCTAGTTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACATACAACACCGGTTGGAGAGACAACCCTAATCTTAGATGGGGAAACGATAACCAAAGACCCGCGCAAGCAACTTCATCTTCAAACAATCAAGGTACTAATTTGGAAGACTTAGTTAAAGCTCTTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAGCAAATATCTCAACTAACAAATGCCATAAGCAAACTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTCAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGCGAAGAAAAGGTAACTTCTACCCCTGACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAATCAGAAACAAGTACTTCACCATCTTCATTAAAAGGAACCAGGAATTGA

Coding sequence (CDS)

ATGCCTAGGTCAGTCGAACATGCTTGGAATTTTACCATTTCTCATCCGAATTTCGAAAGAGTCATTACTTTGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCTTTAGCTGACAAGACCCCTATTGAAGCTAGAGAGCTCATTTCAAGGATGGCTGAAAATTCACAGAATTTTGGCAACAGAGCATCCGAGCTCGACAATTCATTAACAAAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTTTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAAGTCGTTAAGTGCGGGGTTTGCGGTCTAGTTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACATACAACACCGGTTGGAGAGACAACCCTAATCTTAGATGGGGAAACGATAACCAAAGACCCGCGCAAGCAACTTCATCTTCAAACAATCAAGGTACTAATTTGGAAGACTTAGTTAAAGCTCTTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAGCAAATATCTCAACTAACAAATGCCATAAGCAAACTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTCAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGCGAAGAAAAGGTAACTTCTACCCCTGACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAATCAGAAACAAGTACTTCACCATCTTCATTAAAAGGAACCAGGAATTGA

Protein sequence

MPRSVEHAWNFTISHPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTRN

Homology

[Close]

BLAST of PI0027966 vs. ExPASy TrEMBL
Match: A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 3.2e-97
Identity = 191/263 (72.62%), Postives = 225/263 (85.55%), Query Frame = 0


Query: 15  HPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASE 74
           H  F   +  YFY GLL++DRNTVDAAAGGALA+K P EARELISRMA+NSQ FGNRASE
Sbjct: 218 HHIFYPSLIQYFYFGLLSSDRNTVDAAAGGALANKIPTEARELISRMAKNSQRFGNRASE 277

Query: 75  LDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVI 134
           L+NSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KC VCGLVGHPNDKCP+++EE N++
Sbjct: 278 LENSLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIV 337

Query: 135 RKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNE 194
           +KYDP+SNTYNTGWRDNP LRWGNDNQ+  QA ++S+NQ TNL+D++KALATNT+SFQ E
Sbjct: 338 KKYDPYSNTYNTGWRDNPILRWGNDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQE 397

Query: 195 MKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLED 254
           MKQQ++QLT  ISK++GKGKLPAQP+HANVS ISLRSGKIL+TPS+ E+KVTS P  L  
Sbjct: 398 MKQQMTQLTTTISKMDGKGKLPAQPNHANVSVISLRSGKILDTPSTKEKKVTSIPLPLNS 457

Query: 255 KNEKKEEKSETSTSPSSLKGTRN 277
           KNE KEEK ET+ S S+ K  ++
Sbjct: 458 KNESKEEKVETNPSLSNPKNDKS 480

[Close]

BLAST of PI0027966 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.7e-96
Identity = 187/252 (74.21%), Postives = 219/252 (86.90%), Query Frame = 0


Query: 25  YFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVS 84
           Y Y  LL++DRNTVDA AGGALADK P EARELIS+MAENSQ+F NRASELDNSLTKEVS
Sbjct: 74  YSYFDLLSSDRNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVS 133

Query: 85  ELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTY 144
           ELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTY
Sbjct: 134 ELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTY 193

Query: 145 NTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTN 204
           N+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++QLT 
Sbjct: 194 NSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTT 253

Query: 205 AISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSE 264
           AISK++GKGKL AQ ++ANVSA+SLRSGKIL+TP++ E+K TS P  L  KNE KEEK E
Sbjct: 254 AISKMDGKGKLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIE 313

Query: 265 TSTSPSSLKGTR 276
           T+ SP + K  +
Sbjct: 314 TNPSPYNSKNDK 325

[Close]

BLAST of PI0027966 vs. ExPASy TrEMBL
Match: A0A5A7SQH8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00200 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 8.0e-96
Identity = 189/253 (74.70%), Postives = 218/253 (86.17%), Query Frame = 0


Query: 25  YFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVS 84
           YFYSGLL+ DRN VDAAA GALADKTPIEARELI RMAENSQNFGNRASELDNSLTKEVS
Sbjct: 97  YFYSGLLSFDRNKVDAAARGALADKTPIEARELILRMAENSQNFGNRASELDNSLTKEVS 156

Query: 85  ELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTY 144
           ELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTY
Sbjct: 157 ELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTY 216

Query: 145 NTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTN 204
           N GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++ ALATNT+SFQ EMKQQ++QLT 
Sbjct: 217 NLGWRDNPNLRWGNDNQKHTQAPPTSSNQGTNLEDII-ALATNTLSFQQEMKQQMTQLTT 276

Query: 205 AISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSE 264
            +SK++GKGKLPAQPDH NVSAISLRSGKIL+TP++ E+KVTS    L  KN+ KEEK E
Sbjct: 277 VLSKMDGKGKLPAQPDHVNVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNQSKEEKVE 336

Query: 265 TSTSPSSLKGTRN 277
           T+   S+ K  ++
Sbjct: 337 TNPLSSNSKNDKS 348

[Close]

BLAST of PI0027966 vs. ExPASy TrEMBL
Match: A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 8.0e-96
Identity = 186/253 (73.52%), Postives = 216/253 (85.38%), Query Frame = 0


Query: 3   RSVEHAWNFTISHPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMA 62
           RS E   +F   H +   +I  YF+SGLL+ DRNT+D  AGGALADKTP EARELISRM 
Sbjct: 80  RSKELCASFPHHHISDPSLIQ-YFHSGLLSFDRNTIDVVAGGALADKTPTEARELISRMV 139

Query: 63  ENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPND 122
           ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPND
Sbjct: 140 ENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPND 199

Query: 123 KCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVK 182
           KC  ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++K
Sbjct: 200 KCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIK 259

Query: 183 ALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEE 242
           AL TNT+SFQ EMKQQ++QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP+++E
Sbjct: 260 ALGTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDYANVSAISLRSGKILDTPTTKE 319

Query: 243 KVTSTP---DLLE 253
           K   TP   +LLE
Sbjct: 320 KKKETPKEEELLE 331

[Close]

BLAST of PI0027966 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 9.8e-94
Identity = 182/240 (75.83%), Postives = 212/240 (88.33%), Query Frame = 0


Query: 35  RNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMT 94
           RNT+D AAGGALADKTP EARELISRMAENS++FGNRASELDNSLTKEVSELKSQMLNMT
Sbjct: 48  RNTLDVAAGGALADKTPTEARELISRMAENSESFGNRASELDNSLTKEVSELKSQMLNMT 107

Query: 95  TLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNL 154
           TLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NL
Sbjct: 108 TLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNL 167

Query: 155 RWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGK 214
           RWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ +MKQQ++QLT AISK++GKGK
Sbjct: 168 RWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGKGK 227

Query: 215 LPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKG 274
           LPAQPDHANVSAISLRSGKIL+TP++ E+K+TS P  L  KNE KEEK ++    ++  G
Sbjct: 228 LPAQPDHANVSAISLRSGKILDTPTTKEKKLTSKPLPLNSKNESKEEKVDSKKEGNTQGG 287

[Close]

BLAST of PI0027966 vs. NCBI nr
Match: KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 364.8 bits (935), Expect = 6.7e-97
Identity = 191/263 (72.62%), Postives = 225/263 (85.55%), Query Frame = 0


Query: 15  HPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASE 74
           H  F   +  YFY GLL++DRNTVDAAAGGALA+K P EARELISRMA+NSQ FGNRASE
Sbjct: 218 HHIFYPSLIQYFYFGLLSSDRNTVDAAAGGALANKIPTEARELISRMAKNSQRFGNRASE 277

Query: 75  LDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVI 134
           L+NSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KC VCGLVGHPNDKCP+++EE N++
Sbjct: 278 LENSLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIV 337

Query: 135 RKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNE 194
           +KYDP+SNTYNTGWRDNP LRWGNDNQ+  QA ++S+NQ TNL+D++KALATNT+SFQ E
Sbjct: 338 KKYDPYSNTYNTGWRDNPILRWGNDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQE 397

Query: 195 MKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLED 254
           MKQQ++QLT  ISK++GKGKLPAQP+HANVS ISLRSGKIL+TPS+ E+KVTS P  L  
Sbjct: 398 MKQQMTQLTTTISKMDGKGKLPAQPNHANVSVISLRSGKILDTPSTKEKKVTSIPLPLNS 457

Query: 255 KNEKKEEKSETSTSPSSLKGTRN 277
           KNE KEEK ET+ S S+ K  ++
Sbjct: 458 KNESKEEKVETNPSLSNPKNDKS 480

[Close]

BLAST of PI0027966 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 360.9 bits (925), Expect = 9.7e-96
Identity = 187/252 (74.21%), Postives = 219/252 (86.90%), Query Frame = 0


Query: 25  YFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVS 84
           Y Y  LL++DRNTVDA AGGALADK P EARELIS+MAENSQ+F NRASELDNSLTKEVS
Sbjct: 74  YSYFDLLSSDRNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVS 133

Query: 85  ELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTY 144
           ELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTY
Sbjct: 134 ELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTY 193

Query: 145 NTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTN 204
           N+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++QLT 
Sbjct: 194 NSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTT 253

Query: 205 AISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSE 264
           AISK++GKGKL AQ ++ANVSA+SLRSGKIL+TP++ E+K TS P  L  KNE KEEK E
Sbjct: 254 AISKMDGKGKLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIE 313

Query: 265 TSTSPSSLKGTR 276
           T+ SP + K  +
Sbjct: 314 TNPSPYNSKNDK 325

[Close]

BLAST of PI0027966 vs. NCBI nr
Match: KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 360.1 bits (923), Expect = 1.6e-95
Identity = 186/253 (73.52%), Postives = 216/253 (85.38%), Query Frame = 0


Query: 3   RSVEHAWNFTISHPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMA 62
           RS E   +F   H +   +I  YF+SGLL+ DRNT+D  AGGALADKTP EARELISRM 
Sbjct: 80  RSKELCASFPHHHISDPSLIQ-YFHSGLLSFDRNTIDVVAGGALADKTPTEARELISRMV 139

Query: 63  ENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPND 122
           ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPND
Sbjct: 140 ENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPND 199

Query: 123 KCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVK 182
           KC  ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++K
Sbjct: 200 KCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIK 259

Query: 183 ALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEE 242
           AL TNT+SFQ EMKQQ++QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP+++E
Sbjct: 260 ALGTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDYANVSAISLRSGKILDTPTTKE 319

Query: 243 KVTSTP---DLLE 253
           K   TP   +LLE
Sbjct: 320 KKKETPKEEELLE 331

[Close]

BLAST of PI0027966 vs. NCBI nr
Match: KAA0032798.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 360.1 bits (923), Expect = 1.6e-95
Identity = 189/253 (74.70%), Postives = 218/253 (86.17%), Query Frame = 0


Query: 25  YFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVS 84
           YFYSGLL+ DRN VDAAA GALADKTPIEARELI RMAENSQNFGNRASELDNSLTKEVS
Sbjct: 97  YFYSGLLSFDRNKVDAAARGALADKTPIEARELILRMAENSQNFGNRASELDNSLTKEVS 156

Query: 85  ELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTY 144
           ELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTY
Sbjct: 157 ELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTY 216

Query: 145 NTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTN 204
           N GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++ ALATNT+SFQ EMKQQ++QLT 
Sbjct: 217 NLGWRDNPNLRWGNDNQKHTQAPPTSSNQGTNLEDII-ALATNTLSFQQEMKQQMTQLTT 276

Query: 205 AISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSE 264
            +SK++GKGKLPAQPDH NVSAISLRSGKIL+TP++ E+KVTS    L  KN+ KEEK E
Sbjct: 277 VLSKMDGKGKLPAQPDHVNVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNQSKEEKVE 336

Query: 265 TSTSPSSLKGTRN 277
           T+   S+ K  ++
Sbjct: 337 TNPLSSNSKNDKS 348

[Close]

BLAST of PI0027966 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 353.2 bits (905), Expect = 2.0e-93
Identity = 182/240 (75.83%), Postives = 212/240 (88.33%), Query Frame = 0


Query: 35  RNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMT 94
           RNT+D AAGGALADKTP EARELISRMAENS++FGNRASELDNSLTKEVSELKSQMLNMT
Sbjct: 48  RNTLDVAAGGALADKTPTEARELISRMAENSESFGNRASELDNSLTKEVSELKSQMLNMT 107

Query: 95  TLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNL 154
           TLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NL
Sbjct: 108 TLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNL 167

Query: 155 RWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGK 214
           RWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ +MKQQ++QLT AISK++GKGK
Sbjct: 168 RWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGKGK 227

Query: 215 LPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKG 274
           LPAQPDHANVSAISLRSGKIL+TP++ E+K+TS P  L  KNE KEEK ++    ++  G
Sbjct: 228 LPAQPDHANVSAISLRSGKILDTPTTKEKKLTSKPLPLNSKNESKEEKVDSKKEGNTQGG 287

The following BLAST results are available for this feature:

BLAST of PI0027966 vs.


Match Name	E-value	Identity	Description

BLAST of PI0027966 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRF5	3.2e-97	72.62	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CRR8	4.7e-96	74.21	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7SQH8	8.0e-96	74.70	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7V0Q7	8.0e-96	73.52	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CB46	9.8e-94	75.83	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0027966 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031967.1	6.7e-97	72.62	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos...	[more]
KAA0047407.1	9.7e-96	74.21	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
KAA0061138.1	1.6e-95	73.52	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0032798.1	1.6e-95	74.70	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotranspos...	[more]
TYK07549.1	2.0e-93	75.83	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0027966 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 192..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..276
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 19..165
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 19..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027966.1	PI0027966.1	mRNA