PI0027945 (gene) Melon (PI 482460) v1

Overview


Name	PI0027945
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Type 1 metallothionein
Location	chr08: 16064925 .. 16066175 (-)
RNA-Seq Expression	PI0027945
Synteny	PI0027945

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAAGCTTTGAGTTTTCGACTAGAAATTCAAAGAAAATTTAAAGTTTTAAATTTTAATTCACTTTAAAAGAAAATGGCAAACTGTGGCTGTGGCTCTGCCTGCAATTGCAGTCCCAACAACTGCTCGTAAGTCTCTTCTCTTTGTTTCTCCAAAAGAAAAAGAAAAAGAAAAAGAAAATTGTTTTTTTAATGTCTGTTTGTTTCTTGGGAATTTGGTTTTCTCGAGAATATTTTTGGTTATTTTATATAATTCCTTCTTTTTTAATGTTTTGATTGATTTTTTTTTTTTTTTAAATTGCAGGTGCAATCATAATGTTGCTCCCATGAAAGAGTACGAACTTTCCATCCTCATCTTCTCTTTTTGTTTATTTTATAATATATATTTTTCCATTTAACTATCTAAAATAATATTACCATCTAACTTAATTAATTATTTCATTCTTTCAAAAAAAAAAAAAATTAATTATTCTAAATTATTTTAATATCTTTACCATGATCAAATTTATCTTTCTTTTGTCTAGACAAAAGAAAATCATTTCATATGTCAAATTACAAATATAGCAAGATGTATATGATCGAATATATTAATGATATATAATGCAAACCCTAACATTTCAAAATTGAATTATCAATTTAAATGAGTTATTATTACTTTCATTTAATCATCTAAATTAAAACTATACTTCTAACAAAGTCTTATTAAATAGTAGGAAGAAAAATTACTATACAATTCTTCCTGTATACACGAGAGAAAAACATGAGTAGAGATTAAAACGATGAAAAAACCACATTAATTATTCCATTGTGAAAGGAAGTTGTATACATATTTTAAAATATAATAATATTAACTTAAATGAAATCTTAATAAATGATTAAATTTATTCACTTGACTCTTAATGAATTTGAACTATTTTTTGCAAACAGAAACTTCGAAGGTGGTTGTGGCTGCAACAAATGCTCATGCGGAGACAATTGCAAGTGCGATCCATGCAACTGCTAAATCTCAAAGCTGATTTCGATATGAAAAGCATACTAATTTACATATTAATGTGCTTATAATGATTTGAATTATGTATCAATGGTTGTGTGTGTGTGTATGTTGTTTGTCTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTGAGAAATAAAATACCACACAGCAACCTATTATTATATATTTGTATCTTGTTTTTCCCTTCCAATGTCATTTCAAATAGGCCAGTTATGACTGGTTGATTTCTATT

mRNA sequence

AGTAAGCTTTGAGTTTTCGACTAGAAATTCAAAGAAAATTTAAAGTTTTAAATTTTAATTCACTTTAAAAGAAAATGGCAAACTGTGGCTGTGGCTCTGCCTGCAATTGCAGTCCCAACAACTGCTCGTGCAATCATAATGTTGCTCCCATGAAAGAAAACTTCGAAGGTGGTTGTGGCTGCAACAAATGCTCATGCGGAGACAATTGCAAGTGCGATCCATGCAACTGCTAAATCTCAAAGCTGATTTCGATATGAAAAGCATACTAATTTACATATTAATGTGCTTATAATGATTTGAATTATGTATCAATGGTTGTGTGTGTGTGTATGTTGTTTGTCTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTGAGAAATAAAATACCACACAGCAACCTATTATTATATATTTGTATCTTGTTTTTCCCTTCCAATGTCATTTCAAATAGGCCAGTTATGACTGGTTGATTTCTATT

Coding sequence (CDS)

ATGGCAAACTGTGGCTGTGGCTCTGCCTGCAATTGCAGTCCCAACAACTGCTCGTGCAATCATAATGTTGCTCCCATGAAAGAAAACTTCGAAGGTGGTTGTGGCTGCAACAAATGCTCATGCGGAGACAATTGCAAGTGCGATCCATGCAACTGCTAA

Protein sequence

MANCGCGSACNCSPNNCSCNHNVAPMKENFEGGCGCNKCSCGDNCKCDPCNC

Homology

[Close]

BLAST of PI0027945 vs. ExPASy Swiss-Prot
Match: P20830 (Metallothionein-like protein 1 OS=Pisum sativum OX=3888 GN=MTA PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 4.5e-05
Identity = 30/75 (40.00%), Postives = 34/75 (45.33%), Query Frame = 0


Query: 1  MANCGCGSACNCSPNNCSCNH------------------NVAPMKENFEG-----GCGCN 53
          M+ CGCGS+CNC  ++C CN                    V P K  FEG          
Sbjct: 1  MSGCGCGSSCNCG-DSCKCNKRSSGLSYSEMETTETVILGVGPAKIQFEGAEMSAASEDG 60

[Close]

BLAST of PI0027945 vs. ExPASy Swiss-Prot
Match: P20238 (Metallothionein-like protein 1 OS=Erythranthe guttata OX=4155 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 5.8e-05
Identity = 30/71 (42.25%), Postives = 34/71 (47.89%), Query Frame = 0


Query: 2  ANCGCGSACNCSPNNCSCN--------------HNVAPMK------ENFEGGCGCNKCSC 53
          + C CGS C C  +NCSC+                VAP+K      E   G  G N C C
Sbjct: 3  SGCSCGSGCKCG-DNCSCSMYPDMETNTTVTMIEGVAPLKMYSEGSEKSFGAEGGNGCKC 62

[Close]

BLAST of PI0027945 vs. ExPASy Swiss-Prot
Match: Q41670 (Metallothionein-like protein 1B OS=Vicia faba OX=3906 GN=MT1B PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 2.9e-04
Identity = 29/75 (38.67%), Postives = 33/75 (44.00%), Query Frame = 0


Query: 1  MANCGCGSACNCSPNNCSCNH------------------NVAPMKENFEG-----GCGCN 53
          M+ C CGS+CNC  ++C CN                    V P K  FEG          
Sbjct: 1  MSGCNCGSSCNCG-DSCKCNKRSSGLSYSEVETKETVILGVGPAKIQFEGAEMSFASKEG 60

[Close]

BLAST of PI0027945 vs. ExPASy Swiss-Prot
Match: Q39511 (Metallothionein-like protein 1 OS=Casuarina glauca OX=3522 GN=MT1 PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 4.9e-04
Identity = 27/72 (37.50%), Postives = 38/72 (52.78%), Query Frame = 0


Query: 1  MANCGCGSACNCSPNNCSCNH----------------NVAPMKENFEGG----CGCNKCS 53
          M++CGCGS C+C  + C+C +                +VAP+K + EG      G + C 
Sbjct: 1  MSSCGCGSGCSCG-SGCNCKNPVLGLSEKTTSKTIVADVAPVKSHPEGSEMSVEGGHGCK 60

[Close]

BLAST of PI0027945 vs. ExPASy TrEMBL
Match: A0A6J1HPV6 (uncharacterized protein LOC111466261 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466261 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.2e-10
Identity = 34/53 (64.15%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 1   MANCGCGSACNCSPNNCSCNHNVAP-MKENFEGGCGCNKCSCGDNCKCDPCNC 53
           M  CGCGSACNC  NNCSC H+ AP MK+N  GG     C CG NC CDPCNC
Sbjct: 53  MPKCGCGSACNCDLNNCSCKHDAAPIMKQNLSGG-----CKCGANCSCDPCNC 100

[Close]

BLAST of PI0027945 vs. ExPASy TrEMBL
Match: A0A6J1HS62 (uncharacterized protein LOC111466261 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466261 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 32/54 (59.26%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 1   MANCGCGSACNCSPNNCSCNHNVAPMKE--NFEGGCGCNKCSCGDNCKCDPCNC 53
           M  CGCGSACNC  NNCSC H+ AP+ +  N  GG     C CG NC CDPCNC
Sbjct: 53  MPKCGCGSACNCDLNNCSCKHDAAPIMKHRNLSGG-----CKCGANCSCDPCNC 101

[Close]

BLAST of PI0027945 vs. ExPASy TrEMBL
Match: Q75NI4 (Type 1 metallothionein OS=Vigna radiata var. radiata OX=3916 GN=MET PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-04
Identity = 32/73 (43.84%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 1  MANCGCGSACNCSPNNCSCNH----------------NVAPMKENFEG-----GCGCNKC 53
          M++CGCGS+CNC  +NCSCN                  V P+K  FEG         N C
Sbjct: 1  MSSCGCGSSCNCG-SNCSCNKYSFDLSYAEKEESIVLGVGPVKAQFEGAEMGVAAEDNGC 60

[Close]

BLAST of PI0027945 vs. ExPASy TrEMBL
Match: Q75NH5 (Type 1 metallothionein OS=Lablab purpureus OX=35936 GN=MET PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-04
Identity = 32/73 (43.84%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 1  MANCGCGSACNCSPNNCSCNH----------------NVAPMKENFEGG-----CGCNKC 53
          M+ CGCGS+CNC  +NCSCN                  V P+K  FEGG        + C
Sbjct: 1  MSGCGCGSSCNCG-SNCSCNKYSFDLSYAEKEESLVLGVGPVKAQFEGGEMGVAAEDSGC 60

[Close]

BLAST of PI0027945 vs. ExPASy TrEMBL
Match: A0A4D6MWR2 (Metallothionein OS=Vigna unguiculata OX=3917 GN=DEO72_LG8g2353 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-04
Identity = 32/73 (43.84%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 1  MANCGCGSACNCSPNNCSCNH----------------NVAPMKENFEGG-----CGCNKC 53
          M+ CGCGS+CNC  +NCSCN                  V P+K  FEGG        + C
Sbjct: 1  MSGCGCGSSCNCG-SNCSCNKYSFDLSYAEKEESLVLGVGPVKAQFEGGEMGVAAEDSGC 60

[Close]

BLAST of PI0027945 vs. NCBI nr
Match: KAE8649531.1 (hypothetical protein Csa_017930, partial [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1  MANCGCGSACNCSPNNCSCNHNVAPMKENFEGGCGCNKCSCGDNCKCDPCNC 53
          MANC CGSACNCSPNNC+CNHNVA MKEN EG CGCNKCSCGDNC C+PCNC
Sbjct: 43 MANCPCGSACNCSPNNCTCNHNVASMKENLEGNCGCNKCSCGDNCSCNPCNC 94

[Close]

BLAST of PI0027945 vs. NCBI nr
Match: XP_022966636.1 (uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 34/53 (64.15%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 1   MANCGCGSACNCSPNNCSCNHNVAP-MKENFEGGCGCNKCSCGDNCKCDPCNC 53
           M  CGCGSACNC  NNCSC H+ AP MK+N  GG     C CG NC CDPCNC
Sbjct: 53  MPKCGCGSACNCDLNNCSCKHDAAPIMKQNLSGG-----CKCGANCSCDPCNC 100

[Close]

BLAST of PI0027945 vs. NCBI nr
Match: XP_022966635.1 (uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima])

HSP 1 Score: 67.4 bits (163), Expect = 4.2e-08
Identity = 32/54 (59.26%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 1   MANCGCGSACNCSPNNCSCNHNVAPMKE--NFEGGCGCNKCSCGDNCKCDPCNC 53
           M  CGCGSACNC  NNCSC H+ AP+ +  N  GG     C CG NC CDPCNC
Sbjct: 53  MPKCGCGSACNCDLNNCSCKHDAAPIMKHRNLSGG-----CKCGANCSCDPCNC 101

[Close]

BLAST of PI0027945 vs. NCBI nr
Match: BAD18374.1 (type 1 metallothionein [Vigna radiata var. radiata])

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 32/73 (43.84%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 1  MANCGCGSACNCSPNNCSCNH----------------NVAPMKENFEG-----GCGCNKC 53
          M++CGCGS+CNC  +NCSCN                  V P+K  FEG         N C
Sbjct: 1  MSSCGCGSSCNCG-SNCSCNKYSFDLSYAEKEESIVLGVGPVKAQFEGAEMGVAAEDNGC 60

[Close]

BLAST of PI0027945 vs. NCBI nr
Match: QCE04317.1 (Metallothionein [Vigna unguiculata] >BAD18384.1 type 1 metallothionein [Lablab purpureus])

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 32/73 (43.84%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 1  MANCGCGSACNCSPNNCSCNH----------------NVAPMKENFEGG-----CGCNKC 53
          M+ CGCGS+CNC  +NCSCN                  V P+K  FEGG        + C
Sbjct: 1  MSGCGCGSSCNCG-SNCSCNKYSFDLSYAEKEESLVLGVGPVKAQFEGGEMGVAAEDSGC 60

The following BLAST results are available for this feature:

BLAST of PI0027945 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20830	4.5e-05	40.00	Metallothionein-like protein 1 OS=Pisum sativum OX=3888 GN=MTA PE=3 SV=1	[more]
P20238	5.8e-05	42.25	Metallothionein-like protein 1 OS=Erythranthe guttata OX=4155 PE=3 SV=1	[more]
Q41670	2.9e-04	38.67	Metallothionein-like protein 1B OS=Vicia faba OX=3906 GN=MT1B PE=3 SV=1	[more]
Q39511	4.9e-04	37.50	Metallothionein-like protein 1 OS=Casuarina glauca OX=3522 GN=MT1 PE=3 SV=1	[more]

BLAST of PI0027945 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HPV6	8.2e-10	64.15	uncharacterized protein LOC111466261 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HS62	2.0e-08	59.26	uncharacterized protein LOC111466261 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
Q75NI4	1.8e-04	43.84	Type 1 metallothionein OS=Vigna radiata var. radiata OX=3916 GN=MET PE=2 SV=1	[more]
Q75NH5	1.8e-04	43.84	Type 1 metallothionein OS=Lablab purpureus OX=35936 GN=MET PE=2 SV=1	[more]
A0A4D6MWR2	1.8e-04	43.84	Metallothionein OS=Vigna unguiculata OX=3917 GN=DEO72_LG8g2353 PE=3 SV=1	[more]

BLAST of PI0027945 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649531.1	1.1e-19	86.54	hypothetical protein Csa_017930, partial [Cucumis sativus]	[more]
XP_022966636.1	1.7e-09	64.15	uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima]	[more]
XP_022966635.1	4.2e-08	59.26	uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima]	[more]
BAD18374.1	3.6e-04	43.84	type 1 metallothionein [Vigna radiata var. radiata]	[more]
QCE04317.1	3.6e-04	43.84	Metallothionein [Vigna unguiculata] >BAD18384.1 type 1 metallothionein [Lablab p...	[more]

BLAST of PI0027945 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027945.1	PI0027945.1	mRNA