PI0027605 (gene) Melon (PI 482460) v1

Overview


Name	PI0027605
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol
Location	chr07: 16202572 .. 16203950 (-)
RNA-Seq Expression	PI0027605
Synteny	PI0027605

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGGTTAGAATAACTTGTATTTGTACAAGTTATCAGTAGTCACGGTATAGAACTTTCATTTCGCATGAATACATGCATTTACGCGAGACTTAGCGAGGATCAAAATTAGCGAACAACAAAGATATTTTTCATCAACGAGCATGCAATCTTTTCTTCTTCTAATATATTGGACTGATACCTACTGACAATCCCTATTGAGTAGCAAATGTCAGGTCAACTACATAATATTGCATACATAAAACTCCCAACTGTGGAAGCATAGGGAATTTGTCTCATATTTTCAAATTCTCAAGGTGTCTTAGGACATTGTCCTTTATTTTCAATGTGGGTCAGAAATCCACGTTGCACGCAACCATTTCCATATCTGATTAAGCAGTTGTGCTTGAAGGCATGTCCCGCGTCGAAGACTCTCCTTAAAATGCCAATCAAAGATGAAGTTTGCTCAATTGCAAGCCTTCATTGAATTATCAATCTCCATAAGAATGAGGTCAAAAGAAGACTCCTCAAGACTAAGAAAGCTAGAAAAGAAATTAAGGATGATGAAGTGGAGATTGAAGAAGAAGAGCAAAGGAAGAGTAAAACGTCAAGCCCAATGATCCGTAAGAGGAGAGGCAAGGATGAGGTCTCTAGGTCAAGAAAAATAGCAAAAAAAAACTAAGGCCAAGGGCTCTGCTGACCCTTCTCCTCTTGCGGCCAACACTTTGTTGGGCCCCCAAATGCCCAAAACCACCATTTCACTCTTACCTTCCAAAACCCTCAAAGCAACCAATACTTGCTATCCAAAAAGCCACCACCTCCTCCAACAATCCAAAGTCCATCTCCCAAAAAATTCAAGTCACCAAGCCCTTCTCGCCAAATCCAAAATACCATCACTACTCCTCCTCAATGACAAGAAGAAAATCCCCAATCTCTTGTCATAAAATTACCTGACTAAACCACCACCTCGCCAGTTGAAGATCATGATCCCAATTTAACAAGGAGATAAGTTGTTTCATCCAAGACCTCTGCGATCCACAAATCGAGATCGAACCAACAACAAAGGATCCAGAAAATGTGACCCTAGTTCTTGTTGGGCAGCAAGAAAAAAAGTCTTGGAGGAGCCGGTTGATGACCCATTCCCCAAAGGTAAGCAAATCACCTTTGAGAACACAAGTGAGATACGTGCTCCCTCACCGCCTAAACAAACAGAAGACCAACCAAGTAATGAGGATGATGATTATTATAAGTTCATCAATGATACAATTGGAAAACCAATGATGGATGGACTTGAAAATATTTCCCAAACCCATGTAGATCTGCAAGAACGCGCGATGAGACATGAAAAGCAGATTCTGGACTTGGAGTTAAAGATCAATAATCATCATCAAGCGTAG

mRNA sequence

ATGGCAAAGAATGAGGTCAAAAGAAGACTCCTCAAGACTAAGAAAGCTAGAAAAGAAATTAAGGATGATGAAGTGGAGATTGAAGAAGAAGAGCAAAGGAAGAGTAAAACGTCAAGCCCAATGATCCCAAGAAAAAAAGTCTTGGAGGAGCCGGTTGATGACCCATTCCCCAAAGGTAAGCAAATCACCTTTGAGAACACAAGTGAGATACGTGCTCCCTCACCGCCTAAACAAACAGAAGACCAACCAAGTAATGAGGATGATGATTATTATAAGTTCATCAATGATACAATTGGAAAACCAATGATGGATGGACTTGAAAATATTTCCCAAACCCATGTAGATCTGCAAGAACGCGCGATGAGACATGAAAAGCAGATTCTGGACTTGGAGTTAAAGATCAATAATCATCATCAAGCGTAG

Coding sequence (CDS)

ATGGCAAAGAATGAGGTCAAAAGAAGACTCCTCAAGACTAAGAAAGCTAGAAAAGAAATTAAGGATGATGAAGTGGAGATTGAAGAAGAAGAGCAAAGGAAGAGTAAAACGTCAAGCCCAATGATCCCAAGAAAAAAAGTCTTGGAGGAGCCGGTTGATGACCCATTCCCCAAAGGTAAGCAAATCACCTTTGAGAACACAAGTGAGATACGTGCTCCCTCACCGCCTAAACAAACAGAAGACCAACCAAGTAATGAGGATGATGATTATTATAAGTTCATCAATGATACAATTGGAAAACCAATGATGGATGGACTTGAAAATATTTCCCAAACCCATGTAGATCTGCAAGAACGCGCGATGAGACATGAAAAGCAGATTCTGGACTTGGAGTTAAAGATCAATAATCATCATCAAGCGTAG

Protein sequence

MAKNEVKRRLLKTKKARKEIKDDEVEIEEEEQRKSKTSSPMIPRKKVLEEPVDDPFPKGKQITFENTSEIRAPSPPKQTEDQPSNEDDDYYKFINDTIGKPMMDGLENISQTHVDLQERAMRHEKQILDLELKINNHHQA

Homology

[Close]

BLAST of PI0027605 vs. ExPASy TrEMBL
Match: A0A5D3DK59 (Gag-pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00780 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 45  KKVLEEPVDDPFPKGKQITFENTSEIRAPSPPKQTEDQPSN------EDDDYYKFINDTI 104
           K V EEPVDD   KGKQI +E+  E   PSP KQT +Q  N      ++D Y+KFI+DT 
Sbjct: 53  KDVSEEPVDDSLLKGKQIAYEDIGEKHVPSPLKQTNEQQDNTTRESDDEDQYFKFISDTF 112

Query: 105 GKPMMDGLENISQTHVDLQE 119
           GKPMMD LE+I Q   DLQE
Sbjct: 113 GKPMMDELEDIFQIQSDLQE 132

[Close]

BLAST of PI0027605 vs. ExPASy TrEMBL
Match: A0A5A7T7V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001610 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.2e-11
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 43  PRKKVLEEPVDDPFPKGKQITFENTSEIRAPSPPKQTEDQ-----PSNEDDDYYKFINDT 102
           PRK+VLE+ VDDP  KGK IT +  SE   PSPPK+T  Q      S++ D+Y+KFI + 
Sbjct: 36  PRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPKETSKQHDTAKESDDKDEYFKFIENN 95

Query: 103 IGKPMMDGLENISQTHVDLQERAMRHEK 126
            GKPM DG E++ Q   + QE  +R +K
Sbjct: 96  FGKPMRDGFEDMFQCQANFQESQLRSQK 123

[Close]

BLAST of PI0027605 vs. ExPASy TrEMBL
Match: A0A5A7U0L9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00960 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 43/80 (53.75%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 69  EIRAPSPPKQTEDQPSN------EDDDYYKFINDTIGKPMMDGLENISQTHVDLQERAMR 128
           E  AP P KQ  +Q  N       +D Y+KFI DT GKP+MDG +++ Q  VDLQE   R
Sbjct: 13  ETHAPLPLKQINNQQKNAAGESDNEDHYFKFIGDTFGKPVMDGFKDVFQNQVDLQECTWR 72

Query: 129 HEKQILDLELKINN---HHQ 140
           HEKQI DLELKI+N   HHQ
Sbjct: 73  HEKQIQDLELKIDNCNQHHQ 92

[Close]

BLAST of PI0027605 vs. ExPASy TrEMBL
Match: A0A5D3E1H0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00350 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 44/127 (34.65%), Postives = 73/127 (57.48%), Query Frame = 0


Query: 30  EEQRKSKTSSPMIPRKKVLEEPVDDPFPKGKQITFENTSEIRAPSPPKQ--------TED 89
           +E   +  +  ++  K +LE+ +DDP  K KQ+  E+ S+ R PSPPKQ        T+ 
Sbjct: 71  KESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQ 130

Query: 90  QPSNEDDD-----YYKFINDTIGKPMMDGLENISQTHVDLQERAMRHEKQILDLELKINN 141
           + +  DDD     Y+KFIN+ + +P+  G E++ Q   +LQE  ++++K + DLELK ++
Sbjct: 131 KEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQKPLQDLELKPDS 190

[Close]

BLAST of PI0027605 vs. ExPASy TrEMBL
Match: A0A5A7TJU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00130 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 44/127 (34.65%), Postives = 73/127 (57.48%), Query Frame = 0


Query: 30  EEQRKSKTSSPMIPRKKVLEEPVDDPFPKGKQITFENTSEIRAPSPPKQ--------TED 89
           +E   +  +  ++  K +LE+ +DDP  K KQ+  E+ S+ R PSPPKQ        T+ 
Sbjct: 116 KESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQ 175

Query: 90  QPSNEDDD-----YYKFINDTIGKPMMDGLENISQTHVDLQERAMRHEKQILDLELKINN 141
           + +  DDD     Y+KFIN+ + +P+  G E++ Q   +LQE  ++++K + DLELK ++
Sbjct: 176 KEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQKPLQDLELKPDS 235

[Close]

BLAST of PI0027605 vs. NCBI nr
Match: TYK23898.1 (gag-pol [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-11
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 45  KKVLEEPVDDPFPKGKQITFENTSEIRAPSPPKQTEDQPSN------EDDDYYKFINDTI 104
           K V EEPVDD   KGKQI +E+  E   PSP KQT +Q  N      ++D Y+KFI+DT 
Sbjct: 53  KDVSEEPVDDSLLKGKQIAYEDIGEKHVPSPLKQTNEQQDNTTRESDDEDQYFKFISDTF 112

Query: 105 GKPMMDGLENISQTHVDLQE 119
           GKPMMD LE+I Q   DLQE
Sbjct: 113 GKPMMDELEDIFQIQSDLQE 132

[Close]

BLAST of PI0027605 vs. NCBI nr
Match: TYK19850.1 (hypothetical protein E5676_scaffold811G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-11
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 43  PRKKVLEEPVDDPFPKGKQITFENTSEIRAPSPPKQTEDQ-----PSNEDDDYYKFINDT 102
           PRK+VLE+ VDDP  KGK IT +  SE   PSPPK+T  Q      S+E D+Y+KFI + 
Sbjct: 36  PRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPKETSKQHDTAKESDEKDEYFKFIENN 95

Query: 103 IGKPMMDGLENISQTHVDLQERAMRHEK 126
            GKPM DG E++ Q   + QE  +R EK
Sbjct: 96  FGKPMRDGFEDMFQCQANFQESQLRSEK 123

[Close]

BLAST of PI0027605 vs. NCBI nr
Match: KAA0038296.1 (hypothetical protein E6C27_scaffold270G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-10
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 43  PRKKVLEEPVDDPFPKGKQITFENTSEIRAPSPPKQTEDQ-----PSNEDDDYYKFINDT 102
           PRK+VLE+ VDDP  KGK IT +  SE   PSPPK+T  Q      S++ D+Y+KFI + 
Sbjct: 36  PRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPKETSKQHDTAKESDDKDEYFKFIENN 95

Query: 103 IGKPMMDGLENISQTHVDLQERAMRHEK 126
            GKPM DG E++ Q   + QE  +R +K
Sbjct: 96  FGKPMRDGFEDMFQCQANFQESQLRSQK 123

[Close]

BLAST of PI0027605 vs. NCBI nr
Match: KAA0047757.1 (hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa] >TYK02391.1 hypothetical protein E5676_scaffold155G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-10
Identity = 43/80 (53.75%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 69  EIRAPSPPKQTEDQPSN------EDDDYYKFINDTIGKPMMDGLENISQTHVDLQERAMR 128
           E  AP P KQ  +Q  N       +D Y+KFI DT GKP+MDG +++ Q  VDLQE   R
Sbjct: 13  ETHAPLPLKQINNQQKNAAGESDNEDHYFKFIGDTFGKPVMDGFKDVFQNQVDLQECTWR 72

Query: 129 HEKQILDLELKINN---HHQ 140
           HEKQI DLELKI+N   HHQ
Sbjct: 73  HEKQIQDLELKIDNCNQHHQ 92

[Close]

BLAST of PI0027605 vs. NCBI nr
Match: TYK29776.1 (hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-09
Identity = 44/127 (34.65%), Postives = 73/127 (57.48%), Query Frame = 0


Query: 30  EEQRKSKTSSPMIPRKKVLEEPVDDPFPKGKQITFENTSEIRAPSPPKQ--------TED 89
           +E   +  +  ++  K +LE+ +DDP  K KQ+  E+ S+ R PSPPKQ        T+ 
Sbjct: 71  KESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQ 130

Query: 90  QPSNEDDD-----YYKFINDTIGKPMMDGLENISQTHVDLQERAMRHEKQILDLELKINN 141
           + +  DDD     Y+KFIN+ + +P+  G E++ Q   +LQE  ++++K + DLELK ++
Sbjct: 131 KEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQKPLQDLELKPDS 190

The following BLAST results are available for this feature:

BLAST of PI0027605 vs.


Match Name	E-value	Identity	Description

BLAST of PI0027605 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DK59	1.1e-11	55.00	Gag-pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00780 PE=4 S...	[more]
A0A5A7T7V1	5.2e-11	47.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U0L9	1.5e-10	53.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E1H0	2.2e-09	34.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJU0	2.2e-09	34.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0027605 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23898.1	2.2e-11	55.00	gag-pol [Cucumis melo var. makuwa]	[more]
TYK19850.1	2.2e-11	50.00	hypothetical protein E5676_scaffold811G00610 [Cucumis melo var. makuwa]	[more]
KAA0038296.1	1.1e-10	47.73	hypothetical protein E6C27_scaffold270G001610 [Cucumis melo var. makuwa]	[more]
KAA0047757.1	3.2e-10	53.75	hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa] >TYK023...	[more]
TYK29776.1	4.6e-09	34.65	hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa]	[more]

BLAST of PI0027605 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 106..133
None	No IPR available	COILS	Coil	Coil	coord: 3..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027605.1	PI0027605.1	mRNA