PI0027600 (gene) Melon (PI 482460) v1

Overview
NamePI0027600
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionE3 ubiquitin-protein ligase SHPRH isoform X4
Locationchr04: 21503943 .. 21504155 (+)
RNA-Seq ExpressionPI0027600
SyntenyPI0027600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGAGAAGAAAACCTGACGATGTTCCACTACGTTATACCAATGAAGATTCATAAGAAGATTATGAAGCTTGGCATGAACAGCAAGAGGATGACTCTTCAAGTGGCGATGAACAAGAAAATATCTAGAATTACAATGACGAAAGGCGAATGGGACGAATTAATAGAAGGCAAGAAGCAAGAATGGAAGTTCACCATGATTATAAAATGA

mRNA sequence

ATGATCGGAGAAGAAAACCTGACGATGTTCCACTACGTTATACCAATGAAGATTCATAAGAAGATTATGAAGCTTGGCATGAACAGCAAGAGGATGACTCTTCAAGTGGCGATGAACAAGAAAATATCTAGAATTACAATGACGAAAGGCGAATGGGACGAATTAATAGAAGGCAAGAAGCAAGAATGGAAGTTCACCATGATTATAAAATGA

Coding sequence (CDS)

ATGATCGGAGAAGAAAACCTGACGATGTTCCACTACGTTATACCAATGAAGATTCATAAGAAGATTATGAAGCTTGGCATGAACAGCAAGAGGATGACTCTTCAAGTGGCGATGAACAAGAAAATATCTAGAATTACAATGACGAAAGGCGAATGGGACGAATTAATAGAAGGCAAGAAGCAAGAATGGAAGTTCACCATGATTATAAAATGA

Protein sequence

MIGEENLTMFHYVIPMKIHKKIMKLGMNSKRMTLQVAMNKKISRITMTKGEWDELIEGKKQEWKFTMIIK
Homology
[Close]
BLAST of PI0027600 vs. ExPASy TrEMBL
Match: A0A5A7U7S6 (E3 ubiquitin-protein ligase SHPRH isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004530 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 4   EENLTMFHYVIPMKIHKKIMKLGMNSKRMTLQVAMNKKISRITMTKGEWDELIEGKKQE 63
           E + TMFH+V+  KI KKIMKL  NSK+ TLQVAM+K IS ITMTK EWD+LIEGKK E
Sbjct: 862 EGDPTMFHFVMLKKIRKKIMKL--NSKKTTLQVAMSKGISGITMTKCEWDKLIEGKKHE 918

[Close]
BLAST of PI0027600 vs. NCBI nr
Match: KAA0051973.1 (E3 ubiquitin-protein ligase SHPRH isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.3e-09
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 4   EENLTMFHYVIPMKIHKKIMKLGMNSKRMTLQVAMNKKISRITMTKGEWDELIEGKKQE 63
           E + TMFH+V+  KI KKIMKL  NSK+ TLQVAM+K IS ITMTK EWD+LIEGKK E
Sbjct: 862 EGDPTMFHFVMLKKIRKKIMKL--NSKKTTLQVAMSKGISGITMTKCEWDKLIEGKKHE 918

The following BLAST results are available for this feature:
BLAST of PI0027600 vs.
Match NameE-valueIdentityDescription
BLAST of PI0027600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U7S61.1e-0969.49E3 ubiquitin-protein ligase SHPRH isoform X4 OS=Cucumis melo var. makuwa OX=1194... [more]
BLAST of PI0027600 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051973.12.3e-0969.49E3 ubiquitin-protein ligase SHPRH isoform X4 [Cucumis melo var. makuwa][more]
BLAST of PI0027600 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0027600.1PI0027600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding