PI0027572 (gene) Melon (PI 482460) v1

Overview
NamePI0027572
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr12: 8360030 .. 8360524 (-)
RNA-Seq ExpressionPI0027572
SyntenyPI0027572
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCCCACAATGCAAAAAGTCTCATCTTTTACACATTTTCTTACTTCCGATCCCTCACCCTTCCCTTCGCTTCTCCTTCTCCTCCTCATCTTCACCTTCCATATCCCTACATGTCGTTTCTTCTCTTACCACCATTTTCCATGGCCGCCTCTTTTCTATTACAATTGTGTTGGCAATCATAAGATACTCTGCAATCCCCTTCCAATATCCAGTCCTAGAAGATTGCCTTGTGGTGGTTGGGCTTTACGAGCAGCGCCAATCGCCTTACTCGTGGTTGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTTCTGCCAGGAAGTGGGGGTCTCAGGGCTGCCGTGTTTCAACCATTTCAGAACACAAGGCAGAGGATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATAGTACTACTATTCAATATGGCTCAACGGCAGGCACTCGTTCGGCGCTGCTTGTTTGTAAGAAGTATGTGA

mRNA sequence

ATGATTCCCACAATGCAAAAAGTCTCATCTTTTACACATTTTCTTACTTCCGATCCCTCACCCTTCCCTTCGCTTCTCCTTCTCCTCCTCATCTTCACCTTCCATATCCCTACATGTCGTTTCTTCTCTTACCACCATTTTCCATGGCCGCCTCTTTTCTATTACAATTGTGTTGGCAATCATAAGATACTCTGCAATCCCCTTCCAATATCCAGTCCTAGAAGATTGCCTTGTGGTGGTTGGGCTTTACGAGCAGCGCCAATCGCCTTACTCGTGGTTGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTTCTGCCAGGAAGTGGGGGTCTCAGGGCTGCCGTGTTTCAACCATTTCAGAACACAAGGCAGAGGATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATAGTACTACTATTCAATATGGCTCAACGGCAGGCACTCGTTCGGCGCTGCTTGTTTGTAAGAAGTATGTGA

Coding sequence (CDS)

ATGATTCCCACAATGCAAAAAGTCTCATCTTTTACACATTTTCTTACTTCCGATCCCTCACCCTTCCCTTCGCTTCTCCTTCTCCTCCTCATCTTCACCTTCCATATCCCTACATGTCGTTTCTTCTCTTACCACCATTTTCCATGGCCGCCTCTTTTCTATTACAATTGTGTTGGCAATCATAAGATACTCTGCAATCCCCTTCCAATATCCAGTCCTAGAAGATTGCCTTGTGGTGGTTGGGCTTTACGAGCAGCGCCAATCGCCTTACTCGTGGTTGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTTCTGCCAGGAAGTGGGGGTCTCAGGGCTGCCGTGTTTCAACCATTTCAGAACACAAGGCAGAGGATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATAGTACTACTATTCAATATGGCTCAACGGCAGGCACTCGTTCGGCGCTGCTTGTTTGTAAGAAGTATGTGA

Protein sequence

MIPTMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHIPTCRFFSYHHFPWPPLFYYNCVGNHKILCNPLPISSPRRLPCGGWALRAAPIALLVVVSWLSQKESAGVSARKWGSQGCRVSTISEHKAEDEEIGGCTPWVLVGMIVLLFNMAQRQALVRRCLFVRSM
Homology
BLAST of PI0027572 vs. ExPASy TrEMBL
Match: A0A5A7TJ52 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00210 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.3e-82
Identity = 150/164 (91.46%), Postives = 156/164 (95.12%), Query Frame = 0

Query: 1   MIPTMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHIPTCRFFSYHHFPWPPLFYYNCVGN 60
           MIP MQKV SFT+FLTSDPSPFPSLLL+LLIFTFHIP CRFFSYHHFPW PLFYYNCVGN
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  HKILCNPLPISSPRRLPCGGWALRAAPIALLVVVSWLSQKESAGVSARKWGSQGCRVSTI 120
           HKILCNP+P SSPRRLP GGWALRAAPIALLVVVSWLSQKESAGV+ARKWGSQGC VSTI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SEHKAEDEEIGGCTPWVLVGMIVLLFNMAQRQALVRRCLFVRSM 165
           SEHKAEDEEIGGCTPWVLVG+IVLLFNMAQRQAL+R CLFVRSM
Sbjct: 121 SEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of PI0027572 vs. ExPASy TrEMBL
Match: A0A0A0LW23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 148/160 (92.50%), Postives = 151/160 (94.38%), Query Frame = 0

Query: 5   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHIPTCRFFSYHHFPWPPLFYYNCVGNHKIL 64
           MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHI  CRFFSYHHFP  PLFYYNCVGNHKIL
Sbjct: 1   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 60

Query: 65  CNPLPISSPRRLPCGGWALRAAPIALLVVVSWLSQKESAGVSARKWGSQGCRVSTISEHK 124
           CNP+PISSPRRLP GGWALRAAPIALLVVVSWLSQKESAGV+ARKW SQG RVSTISEHK
Sbjct: 61  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 120

Query: 125 AEDEEIGGCTPWVLVGMIVLLFNMAQRQALVRRCLFVRSM 165
           AE EEIGGCTPWVLVGMIVLLFNMAQRQAL+R CLFVRSM
Sbjct: 121 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 160

BLAST of PI0027572 vs. NCBI nr
Match: KAA0043344.1 (hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK02674.1 hypothetical protein E5676_scaffold1734G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 315.5 bits (807), Expect = 2.8e-82
Identity = 150/164 (91.46%), Postives = 156/164 (95.12%), Query Frame = 0

Query: 1   MIPTMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHIPTCRFFSYHHFPWPPLFYYNCVGN 60
           MIP MQKV SFT+FLTSDPSPFPSLLL+LLIFTFHIP CRFFSYHHFPW PLFYYNCVGN
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  HKILCNPLPISSPRRLPCGGWALRAAPIALLVVVSWLSQKESAGVSARKWGSQGCRVSTI 120
           HKILCNP+P SSPRRLP GGWALRAAPIALLVVVSWLSQKESAGV+ARKWGSQGC VSTI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SEHKAEDEEIGGCTPWVLVGMIVLLFNMAQRQALVRRCLFVRSM 165
           SEHKAEDEEIGGCTPWVLVG+IVLLFNMAQRQAL+R CLFVRSM
Sbjct: 121 SEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of PI0027572 vs. NCBI nr
Match: KAE8653331.1 (hypothetical protein Csa_023242 [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 5.8e-80
Identity = 151/164 (92.07%), Postives = 154/164 (93.90%), Query Frame = 0

Query: 1   MIPTMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHIPTCRFFSYHHFPWPPLFYYNCVGN 60
           MIP MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHI  CRFFSYHHFP  PLFYYNCVGN
Sbjct: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60

Query: 61  HKILCNPLPISSPRRLPCGGWALRAAPIALLVVVSWLSQKESAGVSARKWGSQGCRVSTI 120
           HKILCNP+PISSPRRLP GGWALRAAPIALLVVVSWLSQKESAGV+ARKW SQG RVSTI
Sbjct: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120

Query: 121 SEHKAEDEEIGGCTPWVLVGMIVLLFNMAQRQALVRRCLFVRSM 165
           SEHKAE EEIGGCTPWVLVGMIVLLFNMAQRQAL+R CLFVRSM
Sbjct: 121 SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of PI0027572 vs. NCBI nr
Match: KAG6573437.1 (hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 116/164 (70.73%), Postives = 132/164 (80.49%), Query Frame = 0

Query: 1   MIPTMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHIPTCRFFSYHHFPWPPLFYYNCVGN 60
           MIP M K+SS TH LTSDPSPFPSLLLLLLIFT HIPTCRFFSY     P L YY+C G 
Sbjct: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSL-YYHCAGR 60

Query: 61  HKILCNPLPISSPRRLPCGGWALRAAPIALLVVVSWLSQKESAGVSARKWGSQGCRVSTI 120
              LCNP+ +SSP+RLPCGGW+LR APIALLVVVSWL++K++ GV+AR WGS+ C V TI
Sbjct: 61  SNWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTI 120

Query: 121 ---SEHKAEDEEIGGCTPWVLVGMIVLLFNMAQRQALVRRCLFV 162
               +H+ E E IGGCTPWVLVGMI+LLFNMAQRQAL+R CLFV
Sbjct: 121 LDMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TJ521.3e-8291.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LW231.2e-7892.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0043344.12.8e-8291.46hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK026... [more]
KAE8653331.15.8e-8092.07hypothetical protein Csa_023242 [Cucumis sativus][more]
KAG6573437.11.8e-5770.73hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0027572.1PI0027572.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane