PI0027372 (gene) Melon (PI 482460) v1

Overview
NamePI0027372
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr04: 22186362 .. 22189368 (+)
RNA-Seq ExpressionPI0027372
SyntenyPI0027372
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTCAAGGTGACCATCACGGGGAAGCATCTGGCTCCCATGCGAGGTACTACAACAACAGGCCACAACAACAGGCCACAACACTCCCAACATCAACAACAACACACCACCACTACTCCATCCACTTCTTCATCTATGGAGAACCTCCTCCGCGAATACATGCAGAAAAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCGCAATTTGGAACTACAACTAGGGCAGCTAGCTAGCGACTTATCCAGAAGACCACAAGGATCCCTCCCAAGTAATACAGAAACGCCAAACCAGGCGGGGGGATCTGGAAAAGAAAAGTGTCACGCGGTGACACAACGAAGCAGAACGGATCCGACCATCGCGATCCCGATACCGAACATAGCAATCCCACTTCTCATTCTACTACCGAGATCGACAGCTCAAGTAACATTTCTAATCTTGTACATTCTTTTTAACTAACAATATTTCTTCCTCGCAGAATAAGGACGTGTCAAGCAAGGGCATGGAGAGCACGGGGCAACGCAAACAACGGAGTGAAACATCTCAACAGGCGACGAGCTCGGTACCTTTACTACCTCCTCCATTTCCTGGTCGCCTAAAGAAGAAAGGCGACGAACAACAATTTCAGAAGTTCTTTGACGTCCTGAAGCAACTTCACATCAACATCCCGTTTGTTGATGCGTTAGAGCAGATGCCTTTATATGTCAAATTTTTAAAAGACATTTTGGCAAAGAAAAGAAGGATGAATGACTACTAAATAGTAGCTCTAACGCAGGCAATGATCGACGTCTTCAAAAATAAGGTACCCGAGAAGATGATAGACCCTGGTAGCTTCACGGTACCGTGCTCAATAGGTGGCATGGATCTAGGTCGCGCACTATGCGATCTGAGAGCCAGTATTAACCTGATGCCTCTCTCCATCTTCAAGAAATTAAGGATAGAGGAGGTACAACCAACTTTCATCAGGCTCCAATTCACTGATCGATCCATTGCAATGCCTGAAGGAAAAATTGAAGACGTTCTGGTAAAGGTGGATAAATTTTTGTTCCCCACCGACTACGTCATTCTAGATTACGAAGCGGATCGAGAGGTGTGATAAATTGTATAAATACAAGTTATTATAGCCTTTTAGGCAAAACAATGTGGGTAAAACGCGGAATAAATGGTCTTAATGCGTAGTTTGTAGTGTGAATATGTAATGATTTAAAAATGAGATTCGCATAAGTCATTATGCGTGTTTAACTATGTTTTCAAGTGCTTTTGCACACAGAAAGGCAAAGAGAGGAAAAGTAAGTGATCAACATTGCATTTAGGCGATCAAAAGAGCATCTGGCGAATAGCGAGTACAACACTACGCGATGCTAACTCGCTAAAAGACAAGAATGGTAGTTGGAGATGATGTGACTATTCTGAAATGCTTTCGGCGCGAGAAGGACACTGTACAAAAGAGCATTAAATGCTTCTCCCAAAGAGCATAACTATAAATACTCTCAACTCCAAGTGCATAAAATAGAAGAGGAGACCATCACTAGAATAACCAGGGTAGAACGCCTATTAGAGTTCTCCCCATTTGCAGCTTCAATCCTCCACCCTTTCTCCAATCATCAATTCGACGAGAGCTCAAGAGAGAAGATTAGAGAGAGAGAATTTTCCATATACTATCCCCCTAACTTGTAAAAGAGCCAACAAATGCAAGTAATTGCATTCAGCGGCTTGACACATCCCTTTTCCTATCCATTTTATGTATTCTATTGTATTGTACAAAAATGTGTAATTCATGGCCGCAAGGTCTACAGTATTAATACAATATAGTTCATCCACTTCCAGTCTACCATCTCTATACTTTCAAATTGCATGTTTTACATTTTAAGTAGTTGAATTGTATATTGCGTGTTTGATAAGGAATTCACTTATAACTGTCATCATGCTTAGGCGAGCTAATTCGCTTGGCTAGTGTTGATCGCCAACTACTCGAGAGAGTAAGTAGCAAGGACATAACTAAGCATGCGTGGAATGAAGTTTAGAACAAACTTCATTCTGGCATTTTAACTCCGTCATTTGCATTCCGAGAGAAAGTAAGTGTGGTATTAGACACCGAAAGGTGACTGCCTTAATAGAGAGTTAAATATGATGTTTATAATCAAGAACGCCTAGGTAAGAAAGTAGAATTCTCTTAAGCATTTTCATTCCGAAAGGCGAGCAAGTGTGGCGTTTGCTACCGAGAGGTGTTCGCCTTAATTATAAGATAATCTTCTTAATCTTATCGCATTGAACATTAACCATATATGTAGTCGCCTAAAGTGTAGCATGTTCCTTCCCATTCTCATACAAGTTAGATCGCATATCCATAACCCATTCCCCTGCAAATGTCTCTTTGTAAATAAGTAGGTTAGGTTCCCATATAACTTTACGTTGCTTTATACATTTGATCTACACTGCCTGGTAAGCACACATTTCACTTAGCTCCTTTGATAGAAATTCCTTGAGTTCGACCATGGCCTTGCTAGGAAACCTCTTACTCCGCTTATATTTGGGCGAGCAAGAGGAAAACTTGTACGATAAACGATATATTATTAGATTCAGCAATGCGTAAGTAGGAATAACATCATCGCATAATCATAATCCTACCGCCTAATAAATTATCATTTCACCATCGCATGAACTTAACATTCACCATCGCGTAAATCTAGTTTGCGTAACCAACTATGCGATCCATCCAATCCATTCCAAGCGAACAAACACCAACCTCCACAACCAAGCCCCTACGTATCAAGTTTTTGGCGTCGTTGCCGGGGAATTTCTTTTTCAATAAGTTAGGTTTAATGTTGTGTTTTGGTTTCAGGCACATTCATTCCATGATGAATCGCATGTTCACCCGAAGAACATGAGTACGAGACTATGCGAACTGAGGAAACTCGTGACGTGCTGCCTTGAACCAAAGAATGAATGCATAATTCGACGAGGTAAATTACTAAAGGTTTCTCAACGTCTGGAACGTTAA

mRNA sequence

ATGGTGGTCAAGGTGACCATCACGGGGAAGCATCTGGCTCCCATGCGAGGTACTACAACAACAGGCCACAACAACAGGCCACAACACTCCCAACATCAACAACAACACACCACCACTACTCCATCCACTTCTTCATCTATGGAGAACCTCCTCCGCGAATACATGCAGAAAAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCGCAATTTGGAACTACAACTAGGGCAGCTAGCTAGCGACTTATCCAGAAGACCACAAGGATCCCTCCCAAGTAATACAGAAACGCCAAACCAGGCGGGGGGATCTGGAAAAGAAAAGTGTCACGCGGTGACACAACGAAGCAGAACGGATCCGACCATCGCGATCCCGATACCGAACATAGCAATCCCACTTCTCATTCTACTACCGAGATCGACAGCTCAAAATAAGGACGTGTCAAGCAAGGGCATGGAGAGCACGGGGCAACGCAAACAACGGAGTGAAACATCTCAACAGGCGACGAGCTCGAAAGGCAAAGAGAGGAAAAGCGAGCTAATTCGCTTGGCTAGTGTTGATCGCCAACTACTCGAGAGAGTTAGGTTCCCATATAACTTTACGTTGCTTTATACATTTGATCTACACTGCCTGGCACATTCATTCCATGATGAATCGCATGTTCACCCGAAGAACATGAGTACGAGACTATGCGAACTGAGGAAACTCGTGACGTGCTGCCTTGAACCAAAGAATGAATGCATAATTCGACGAGGTAAATTACTAAAGGTTTCTCAACGTCTGGAACGTTAA

Coding sequence (CDS)

ATGGTGGTCAAGGTGACCATCACGGGGAAGCATCTGGCTCCCATGCGAGGTACTACAACAACAGGCCACAACAACAGGCCACAACACTCCCAACATCAACAACAACACACCACCACTACTCCATCCACTTCTTCATCTATGGAGAACCTCCTCCGCGAATACATGCAGAAAAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCGCAATTTGGAACTACAACTAGGGCAGCTAGCTAGCGACTTATCCAGAAGACCACAAGGATCCCTCCCAAGTAATACAGAAACGCCAAACCAGGCGGGGGGATCTGGAAAAGAAAAGTGTCACGCGGTGACACAACGAAGCAGAACGGATCCGACCATCGCGATCCCGATACCGAACATAGCAATCCCACTTCTCATTCTACTACCGAGATCGACAGCTCAAAATAAGGACGTGTCAAGCAAGGGCATGGAGAGCACGGGGCAACGCAAACAACGGAGTGAAACATCTCAACAGGCGACGAGCTCGAAAGGCAAAGAGAGGAAAAGCGAGCTAATTCGCTTGGCTAGTGTTGATCGCCAACTACTCGAGAGAGTTAGGTTCCCATATAACTTTACGTTGCTTTATACATTTGATCTACACTGCCTGGCACATTCATTCCATGATGAATCGCATGTTCACCCGAAGAACATGAGTACGAGACTATGCGAACTGAGGAAACTCGTGACGTGCTGCCTTGAACCAAAGAATGAATGCATAATTCGACGAGGTAAATTACTAAAGGTTTCTCAACGTCTGGAACGTTAA

Protein sequence

MVVKVTITGKHLAPMRGTTTTGHNNRPQHSQHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRSRTDPTIAIPIPNIAIPLLILLPRSTAQNKDVSSKGMESTGQRKQRSETSQQATSSKGKERKSELIRLASVDRQLLERVRFPYNFTLLYTFDLHCLAHSFHDESHVHPKNMSTRLCELRKLVTCCLEPKNECIIRRGKLLKVSQRLER
Homology
BLAST of PI0027372 vs. ExPASy TrEMBL
Match: A0A5A7TGS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00540 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-22
Identity = 75/142 (52.82%), Postives = 92/142 (64.79%), Query Frame = 0

Query: 49  NLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEK 108
           N ++   Q NDALLQSQASSI+NLELQLGQL S++SRRP+GSLPSNTETPNQ GGSGKEK
Sbjct: 18  NFIQAMQQWNDALLQSQASSIKNLELQLGQLFSNISRRPKGSLPSNTETPNQVGGSGKEK 77

Query: 109 CHAVTQRSRTDPTIAIP-----------------IPNIAIPLLILLPRSTA--QNKDVSS 168
           C  VT RSR + TI  P                   N + PL   L  +T+  QNK++ +
Sbjct: 78  CQVVTLRSRRNLTIREPKFERRNSTSTSTTKIGSASNDSNPLNSSLTNNTSSLQNKNIPN 137

Query: 169 KGMESTGQRKQRSETSQQATSS 172
           K +EST + +QR E S + TSS
Sbjct: 138 KEVESTRREEQRDEESHETTSS 159

BLAST of PI0027372 vs. ExPASy TrEMBL
Match: A0A0A0KMN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.9e-18
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 0

Query: 28  QHSQH---QQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLS 87
           QH  H    Q H+++  S+  SME+L +EYMQ+NDALLQSQA+SI+NLELQ+GQ+A+D+S
Sbjct: 50  QHLNHHILNQSHSSS--SSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDIS 109

Query: 88  RRPQGSLPSNTETPNQAGGSGKEKCHAVT 114
           R+P+G+LPSNTE P Q G SGKEKC AVT
Sbjct: 110 RQPKGTLPSNTEIPIQGGSSGKEKCQAVT 136

BLAST of PI0027372 vs. ExPASy TrEMBL
Match: A0A5D3DWD5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00200 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.1e-17
Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 9   GKHLAPMRGTTTTGHNNRPQHS-QHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQAS 68
           G +     G     H +RP HS   QQQ TT TPS SSSME L+R YM++NDALLQSQA+
Sbjct: 18  GSYHGKASGYRQRQHQDRPHHSTPQQQQATTNTPSFSSSMETLIRGYMKRNDALLQSQAT 77

Query: 69  SIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAG 103
           SIRNLELQ+GQ+A D S RPQ  LPSNTE  NQAG
Sbjct: 78  SIRNLELQMGQIAIDFSERPQVFLPSNTEMSNQAG 112

BLAST of PI0027372 vs. ExPASy TrEMBL
Match: A0A0A0KN83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.5e-16
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 0

Query: 44  SSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGG 103
           +  ME L REYMQ+NDALLQSQASSI+NLELQLGQLA+D+S RP+G+L  NT+TP Q GG
Sbjct: 45  TKDMEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGG 104

Query: 104 SGKEKCHAVTQRSRTDPTI 123
           S  +K   VT RSR + TI
Sbjct: 105 SSNKKSQLVTLRSRRNLTI 123

BLAST of PI0027372 vs. ExPASy TrEMBL
Match: A0A6J1DYG0 (uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025764 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.6e-14
Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = 0

Query: 27  PQHSQHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRR 86
           PQ   +Q+  T    + +S++EN+++EYM + DA++QSQA+S+RN E QLGQLA++L  R
Sbjct: 187 PQQRYNQRTQTPPVQNNNSNLENMMKEYMARTDAVIQSQAASMRNFETQLGQLANELKNR 246

Query: 87  PQGSLPSNTETPNQAGGSGKEKCHAVTQRS------RTDPTIAIPIPNIAIPLLILLPRS 146
           PQGS P +TE P +    GKE+C AVT RS       T PT  + IP+   P + +    
Sbjct: 247 PQGSFPXHTELPKR---EGKEQCKAVTLRSGLAYDEPTMPTADVQIPSTG-PTVKIPENP 306

Query: 147 TAQNKDVSSKGMEST 156
           T   K    KG E T
Sbjct: 307 TTPEKXNIRKGNEDT 317

BLAST of PI0027372 vs. NCBI nr
Match: KAA0041246.1 (uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK16045.1 uncharacterized protein E5676_scaffold32G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 5.2e-22
Identity = 75/142 (52.82%), Postives = 92/142 (64.79%), Query Frame = 0

Query: 49  NLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEK 108
           N ++   Q NDALLQSQASSI+NLELQLGQL S++SRRP+GSLPSNTETPNQ GGSGKEK
Sbjct: 18  NFIQAMQQWNDALLQSQASSIKNLELQLGQLFSNISRRPKGSLPSNTETPNQVGGSGKEK 77

Query: 109 CHAVTQRSRTDPTIAIP-----------------IPNIAIPLLILLPRSTA--QNKDVSS 168
           C  VT RSR + TI  P                   N + PL   L  +T+  QNK++ +
Sbjct: 78  CQVVTLRSRRNLTIREPKFERRNSTSTSTTKIGSASNDSNPLNSSLTNNTSSLQNKNIPN 137

Query: 169 KGMESTGQRKQRSETSQQATSS 172
           K +EST + +QR E S + TSS
Sbjct: 138 KEVESTRREEQRDEESHETTSS 159

BLAST of PI0027372 vs. NCBI nr
Match: WP_217833224.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 99.4 bits (246), Expect = 5.0e-17
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 0

Query: 44  SSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGG 103
           SSSME LL+EYMQKNDAL+Q+QASSIRNL+LQLGQ+A +   R +GSLPSNTE P   G 
Sbjct: 1   SSSMEALLKEYMQKNDALMQTQASSIRNLKLQLGQIAGEFKTRQKGSLPSNTEAPRGMGS 60

Query: 104 SGKEKCHAVTQRS 117
           SGKE+C AVT RS
Sbjct: 61  SGKEQCQAVTLRS 73

BLAST of PI0027372 vs. NCBI nr
Match: TYK27798.1 (hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 8.5e-17
Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 9   GKHLAPMRGTTTTGHNNRPQHS-QHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQAS 68
           G +     G     H +RP HS   QQQ TT TPS SSSME L+R YM++NDALLQSQA+
Sbjct: 18  GSYHGKASGYRQRQHQDRPHHSTPQQQQATTNTPSFSSSMETLIRGYMKRNDALLQSQAT 77

Query: 69  SIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAG 103
           SIRNLELQ+GQ+A D S RPQ  LPSNTE  NQAG
Sbjct: 78  SIRNLELQMGQIAIDFSERPQVFLPSNTEMSNQAG 112

BLAST of PI0027372 vs. NCBI nr
Match: KGN51008.1 (hypothetical protein Csa_008461 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 7.2e-16
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 0

Query: 44  SSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGG 103
           +  ME L REYMQ+NDALLQSQASSI+NLELQLGQLA+D+S RP+G+L  NT+TP Q GG
Sbjct: 45  TKDMEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGG 104

Query: 104 SGKEKCHAVTQRSRTDPTI 123
           S  +K   VT RSR + TI
Sbjct: 105 SSNKKSQLVTLRSRRNLTI 123

BLAST of PI0027372 vs. NCBI nr
Match: XP_030494874.1 (uncharacterized protein LOC115710657 [Cannabis sativa])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-15
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 0

Query: 13  APMRGTTT--TGHNNRPQHSQHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIR 72
           AP +G      G + +P+HSQH Q       S  SS+E+L+R+YM KNDA++QSQA+S+R
Sbjct: 138 APAQGRQAYPPGFSQQPRHSQHAQ------TSQPSSLESLMRDYMAKNDAVIQSQAASLR 197

Query: 73  NLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRS 117
           NLELQLG LA++L  RPQGSLPS+TE P +    GKE+C+A+  RS
Sbjct: 198 NLELQLGHLANELKARPQGSLPSDTENPRR---DGKEQCNAIQLRS 234

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TGS22.5e-2252.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KMN34.9e-1862.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1[more]
A0A5D3DWD54.1e-1762.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KN833.5e-1665.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1[more]
A0A6J1DYG05.6e-1442.22uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
KAA0041246.15.2e-2252.82uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK... [more]
WP_217833224.15.0e-1771.23hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
TYK27798.18.5e-1762.11hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa][more]
KGN51008.17.2e-1665.82hypothetical protein Csa_008461 [Cucumis sativus][more]
XP_030494874.11.2e-1552.83uncharacterized protein LOC115710657 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0027372.1PI0027372.1mRNA