PI0027290 (gene) Melon (PI 482460) v1

Overview
NamePI0027290
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionSmall nuclear ribonucleoprotein-associated protein
Locationchr04: 446274 .. 450425 (-)
RNA-Seq ExpressionPI0027290
SyntenyPI0027290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAATTTTAGGCTCCAATTTGTAAAACCCTAGGTTTTTCATCCCCCACTCCCCCGCCCGCTTCATTTCTTCTTGCTGGAGTTCTTACTGAAAGAAGAAACCCTAGGTCGCATCTCAGTTCAGGTGTTCGACATTCTGGCACAATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAACGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGCCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTTCCTCAGCTGTCCGCTCCGCCGATGACATATCCGGCTGCACCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCGATCGGGAGAGGTATGCCTCCCCCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCACCACCACCCAGGCCTGGAATGCCAGCTCCCCCACCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAAAACCAACAGCAAAATCAACAGCAATAGAGTTGGTACGCGTCTGCATCTTTGAAAGTCTTTAGTATTACCCCTCCAGCGTTCAATTCTTTTTTTAGCTATCACTAATAAACTTGCGCATCACCGATAAGTTTACCGATCTGCTTTGTCGTGGGATTAAAAATTTATGAGCATTATATTTAGAATGGATCGCATTTTTGGGTATGTTTCCAACTTCCCTGGAATCCCAATTTAGCTTTAGTGTCCGGTTGGTTGAGTTAGGGACTGCCTTTGAAGGTTGTGAGTTTTTGGAATAAGGGTTTTATTCTAACGAATCTTCGGAATTAGTTTCTCTGGCAAGGATGAGGTCATCTGGATTTATTTGTTTTGGCTACTTTATGGTTCTTTTGCTCGAGAAAATCTACAGGATTTTCCAAGGGAAATCTATGTTTCCTTGTCTTAATATATATTCTTTTCCTTCATGTTCAAAGCAACGGTTGAACTTTTTTGTTCTCTTGAAAGGAATATCGTCCATCTTGGCTTGTTTGTTTCTCTGACATTGGCCTACTCTTGGGAATCGATCTCGGTGGTTCCATTTGCCCTTGGGAGCCCAACAAGATCTAGCATTTATCGATAATGCATCTATTTCGGTTTAAAACACTCTTGGTTCCCATACTTTCTCATTGAAGTAAAAAATTCAATTTTATGATTTGCAACAATTCGGTTTTTAAATTTTGGCTAGCCTGCAATGGTTCAGTTCTAGTATTTCTAAAATTTGTAATAGTTTTGTCCTCATGAAAAATCTTATCAAGGGACAAGGGGAAGAAATGATGAGTGTTTCTTAGTTATGTAACACATTTTGCAAATACATTTGGTCCCTAACAGTTTATCAATGTATATGTTAGGATACTTTCTAACAAGAATCAAGATCTGAAATATGTTGAGAATTAAAGAAGAAACTACAAGATAATCCAAGTATAAAAGAACTTGGAACCTCCTTCTTGAGTATTCTCATCTGAGCCCTAGATCATTCCACAAAATAGTCTAACCTTCACTCACTCATCCTGTACTAATTTCCAATGGTCACTCCTCAATACTAAGGTACTAATATTCATTCCTATCTAGGTACCTAACAGTATGTAAGTGAAAATTTCTATTAAATCTTAACAAGATTTACATTGTAGGGAGTAAGTTGTTACAAATGTTGAATTACATAGTAAATTGTAAATAGTCACATGCTAAAGTTTAGAGACCAGAAATAATTATTTTATGTTTAATTATATAACTTACATAGCCACCTCATTGATCCTTCATGCCGGGGCACCAATATCCTTTTGGCATTCAAGCTGGCATTGAGTAACAACACCTTGGGCTTTTATAAGATGGATATATGAGTAGTTTGCTCTATGTTGATGGTACCTTATGATGTATATGTCCAACTGTTAAGTGTTAACTAGTATGCTATATACAATGACTGCTGGAGAAGTGTACTGATTTGTGTACGTGGTTTTGAAAACCAAACTGACTATGTGCCGAAAAGCTGAAATCAACATCACTTTAGTCCCTTTGTTGTTTTATTTCACACCCCAAACTTTTAGAATACACTTGATGGATAAATTTGGAAGTAGCAGTATGGTTCTTACTCCAAATCTTGAAACAATCTCTATTAGAACTAGATGAAATAATTTGTAGACGGCAATAGTGCAGTATTTGAGAAGAAATACATAATATCTCCGCCCCCCGCCCCCACTCAAAAAAAAAAAAAAAAAAAAAGAACAAGAAACTGTGTAATTAAATTATCAGAAAAAGGAGAATAGGGGCATGTGGTGGAGGAAATTTCCACCCAAAACACAGCTAAAGTTACTCTGTAAGTTTAACGTACAAATATAATATACTCTGCTAAAACATACAAAGTTAAAACTTACAAGTTACAATATTTGAAATCTTAAAAGATATTGAAATATTTAGTTGGCTATAACCTGAAGAAGATATCATCATAATACTTTAGGATCGATCAACCTATAAGAAAATCTCTATCCCTTAAAATTTTAAATTAAACATTTTTCTAGATTTGACTAAATGTTTTTGTAAATAAATTGAGTGACTTAATGTTTGCTAAGTTGTGATAATAAAATATGATTTCTAAATAGAAATTTGTGATGGTATTGTTAATTTGCTTTGTATTGAAGGGATATTTTTTCCAAGAGGATGTTTATTTCCCAACTTTCTAGTTCGTTGGTAGCACTTGTTATTGATAAGATCTAGAAAAGCCGGATCGTTGTAGTTGGTCTCAATTGAGTCACTGACTCAGAGAATTAGCTATGATCCTAACTTGTGGCCATCTTGTGCAATGTTATATGGTTTATTCATAGATGTGCACAAATTACTGTGTATTTCTTTCTTGATGCTTTGATGGCACTTTCAAGTGTATGTCAAGATTGGTTGTTTCTCCACTCTCTATCTCTGACAACTCTGTTGGTAAAATATATGCCCCCTGTTTACAAGATCTGAATGCTTGATTGGTATAATGAGGTGATAAAGTCTCTTATGATCTTTAGTTTTTAAACTTTACATATTACAAATTTCCAACCATTCTAGGATTCGAAATTTTGTCCAATATCAAACATTAATGTTATCTTGTAATCTTTAATTTTGCTGTCGCTCATTTTTCAGTAACTTGATAGTTATTTGTTGCAGACATATTGCATGTGATGATCTGTGGAGGTCTTCAGTGGATATTATCTTGTGTTGCTTCAACCTAAGGTTCACTTGCCAGGGGCTACAGCTTGGTTCATCTCTCTGGGCCCAATCTCTCTTGGAATTTGTGTTGATGCTGTTGTAGGATTCGACAATGTACTGTTATTAGCAAATTGTGGTCCTGGTTTTGCAATTTAACCGTTAGAGATATACTTCAAATGCAAGATTTTAATGTGAATTTCCAATTCCTGATCGCCATGTCTCTAGGTAGATTCACTTGCCCCATTCACTTTTTAATCTGTGTTAGGCATTATATAGGATTACTCAAGGACCTCAAGTCTGAATAGTACGAACTGAAGGTTCTGTATTTTGGAACCTCTCCTGTGAAAGGAGAAAATCTACATATTTTTGTGTGCATGAGTTGTGTGTGTGCGTTCTTTTCATGAAACAAATGTACTTTAGATTGGAGAAATATAAAAGGGTAGGAATAAGCAAACTTCTTTCTAATTA

mRNA sequence

GCAATTTTAGGCTCCAATTTGTAAAACCCTAGGTTTTTCATCCCCCACTCCCCCGCCCGCTTCATTTCTTCTTGCTGGAGTTCTTACTGAAAGAAGAAACCCTAGGTCGCATCTCAGTTCAGGTGTTCGACATTCTGGCACAATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAACGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGCCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTTCCTCAGCTGTCCGCTCCGCCGATGACATATCCGGCTGCACCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCGATCGGGAGAGGTATGCCTCCCCCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCACCACCACCCAGGCCTGGAATGCCAGCTCCCCCACCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAAAACCAACAGCAAAATCAACAGCAATAGAGTTGACATATTGCATGTGATGATCTGTGGAGGTCTTCAGTGGATATTATCTTGTGTTGCTTCAACCTAAGGTTCACTTGCCAGGGGCTACAGCTTGGTTCATCTCTCTGGGCCCAATCTCTCTTGGAATTTGTGTTGATGCTGTTGTAGGATTCGACAATGTACTGTTATTAGCAAATTGTGGTCCTGGTTTTGCAATTTAACCGTTAGAGATATACTTCAAATGCAAGATTTTAATGTGAATTTCCAATTCCTGATCGCCATGTCTCTAGGTAGATTCACTTGCCCCATTCACTTTTTAATCTGTGTTAGGCATTATATAGGATTACTCAAGGACCTCAAGTCTGAATAGTACGAACTGAAGGTTCTGTATTTTGGAACCTCTCCTGTGAAAGGAGAAAATCTACATATTTTTGTGTGCATGAGTTGTGTGTGTGCGTTCTTTTCATGAAACAAATGTACTTTAGATTGGAGAAATATAAAAGGGTAGGAATAAGCAAACTTCTTTCTAATTA

Coding sequence (CDS)

ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAACGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGCCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTTCCTCAGCTGTCCGCTCCGCCGATGACATATCCGGCTGCACCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCGATCGGGAGAGGTATGCCTCCCCCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGA

Protein sequence

MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSAARPGGAPPQPFPVLLNLRRDPWDLHQPGR
Homology
[Close]
BLAST of PI0027290 vs. ExPASy Swiss-Prot
Match: Q9TU67 (Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=9365 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-44
Identity = 115/216 (53.24%), Postives = 139/216 (64.35%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QAPPPIGRGMPPP---VPPPQFSAARPGGAPPQPFP 213
             PPP+GRG PPP    PPP     RP   PP   P
Sbjct: 181 GPPPPMGRGAPPPGMMGPPP---GMRPPMGPPMGIP 206

[Close]
BLAST of PI0027290 vs. ExPASy Swiss-Prot
Match: P14678 (Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=9606 GN=SNRPB PE=1 SV=2)

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-44
Identity = 115/216 (53.24%), Postives = 139/216 (64.35%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QAPPPIGRGMPPP---VPPPQFSAARPGGAPPQPFP 213
             PPP+GRG PPP    PPP     RP   PP   P
Sbjct: 181 GPPPPMGRGAPPPGMMGPPP---GMRPPMGPPMGIP 206

[Close]
BLAST of PI0027290 vs. ExPASy Swiss-Prot
Match: Q9N1Q0 (Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=9315 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-44
Identity = 113/216 (52.31%), Postives = 139/216 (64.35%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   + A  GPGIGRAAGRG+P   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQHPPGR-----G 180

Query: 181 QAPPPIGRGMPPP---VPPPQFSAARPGGAPPQPFP 213
             PPP+GRG PPP    PPP     RP   PP   P
Sbjct: 181 GPPPPMGRGRPPPGMMAPPP---GMRPPMGPPTGMP 206

[Close]
BLAST of PI0027290 vs. ExPASy Swiss-Prot
Match: P27048 (Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus OX=10090 GN=Snrpb PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-44
Identity = 115/216 (53.24%), Postives = 139/216 (64.35%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QAPPPIGRGMPPP---VPPPQFSAARPGGAPPQPFP 213
             PPP+GRG PPP    PPP     RP   PP   P
Sbjct: 181 GPPPPMGRGAPPPGMMGPPP---GMRPPMGPPMGLP 206

[Close]
BLAST of PI0027290 vs. ExPASy Swiss-Prot
Match: P17136 (Small nuclear ribonucleoprotein-associated protein B OS=Rattus norvegicus OX=10116 GN=Snrpb PE=2 SV=2)

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-44
Identity = 115/216 (53.24%), Postives = 139/216 (64.35%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QAPPPIGRGMPPP---VPPPQFSAARPGGAPPQPFP 213
             PPP+GRG PPP    PPP     RP   PP   P
Sbjct: 181 GPPPPMGRGAPPPGMMGPPP---GMRPPMGPPMGIP 206

[Close]
BLAST of PI0027290 vs. ExPASy TrEMBL
Match: A0A1S3AZK2 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LOC103484284 PE=3 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.1e-109
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFP 213
           APPPIGRGMPPPVPPPQFSAARPGGAPPQPFP
Sbjct: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFP 212

[Close]
BLAST of PI0027290 vs. ExPASy TrEMBL
Match: A0A6J1EJ14 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662 GN=LOC111433057 PE=3 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.3e-109
Identity = 211/213 (99.06%), Postives = 212/213 (99.53%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPV 214
           APPP+GRGMPPP PPPQFSAARPGGAPPQPFPV
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFPV 213

[Close]
BLAST of PI0027290 vs. ExPASy TrEMBL
Match: A0A0A0KPA9 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN=Csa_6G526300 PE=3 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 4.0e-109
Identity = 210/212 (99.06%), Postives = 211/212 (99.53%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFP 213
           APPPIGRGMPPPVPPPQFS ARPGGAPPQPFP
Sbjct: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFP 212

[Close]
BLAST of PI0027290 vs. ExPASy TrEMBL
Match: A0A5A7UAP6 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009950 PE=3 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 8.9e-109
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0 

Query: 3   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 62
           MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE
Sbjct: 1   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 60

Query: 63  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 122
           RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV
Sbjct: 61  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 120

Query: 123 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 182
           QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP
Sbjct: 121 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 180

Query: 183 PPIGRGMPPPVPPPQFSAARPGGAPPQPFP 213
           PPIGRGMPPPVPPPQFSAARPGGAPPQPFP
Sbjct: 181 PPIGRGMPPPVPPPQFSAARPGGAPPQPFP 210

[Close]
BLAST of PI0027290 vs. ExPASy TrEMBL
Match: A0A6J1IQN3 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita maxima OX=3661 GN=LOC111477902 PE=3 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.7e-107
Identity = 207/213 (97.18%), Postives = 211/213 (99.06%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           +ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  DERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPV 214
           APPP+GRGMPPP PPPQFSAARPGGAPPQPF V
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFQV 213

[Close]
BLAST of PI0027290 vs. NCBI nr
Match: XP_038882444.1 (small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >XP_038882445.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida])

HSP 1 Score: 407.5 bits (1046), Expect = 7.5e-110
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPV 214
           APPP+GRGMPPPVPPPQFSAARPGGAPPQPFPV
Sbjct: 181 APPPVGRGMPPPVPPPQFSAARPGGAPPQPFPV 213

[Close]
BLAST of PI0027290 vs. NCBI nr
Match: XP_008439504.1 (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo])

HSP 1 Score: 406.0 bits (1042), Expect = 2.2e-109
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFP 213
           APPPIGRGMPPPVPPPQFSAARPGGAPPQPFP
Sbjct: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFP 212

[Close]
BLAST of PI0027290 vs. NCBI nr
Match: XP_022925730.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] >XP_023544574.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita pepo subsp. pepo] >KAG6581498.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. sororia] >KAG7034787.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 404.8 bits (1039), Expect = 4.8e-109
Identity = 211/213 (99.06%), Postives = 212/213 (99.53%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPV 214
           APPP+GRGMPPP PPPQFSAARPGGAPPQPFPV
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFPV 213

[Close]
BLAST of PI0027290 vs. NCBI nr
Match: XP_004134546.1 (small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN49496.1 hypothetical protein Csa_003303 [Cucumis sativus])

HSP 1 Score: 404.1 bits (1037), Expect = 8.3e-109
Identity = 210/212 (99.06%), Postives = 211/212 (99.53%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFP 213
           APPPIGRGMPPPVPPPQFS ARPGGAPPQPFP
Sbjct: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFP 212

[Close]
BLAST of PI0027290 vs. NCBI nr
Match: KAA0052454.1 (small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa] >TYK13368.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa])

HSP 1 Score: 402.9 bits (1034), Expect = 1.8e-108
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0 

Query: 3   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 62
           MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE
Sbjct: 1   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 60

Query: 63  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 122
           RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV
Sbjct: 61  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 120

Query: 123 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 182
           QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP
Sbjct: 121 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 180

Query: 183 PPIGRGMPPPVPPPQFSAARPGGAPPQPFP 213
           PPIGRGMPPPVPPPQFSAARPGGAPPQPFP
Sbjct: 181 PPIGRGMPPPVPPPQFSAARPGGAPPQPFP 210

[Close]
BLAST of PI0027290 vs. TAIR 10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 300.8 bits (769), Expect = 9.2e-82
Identity = 174/216 (80.56%), Postives = 183/216 (84.72%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPPIGRGMPPPV----PPPQFSAARPGGAPPQ 210
            GQ  PP+GRG PPP     PP QFS    G  PPQ
Sbjct: 181 GGQG-PPMGRGPPPPYGMRPPPQQFS----GPPPPQ 202

[Close]
BLAST of PI0027290 vs. TAIR 10
Match: AT4G20440.2 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 300.8 bits (769), Expect = 9.2e-82
Identity = 174/216 (80.56%), Postives = 183/216 (84.72%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPPIGRGMPPPV----PPPQFSAARPGGAPPQ 210
            GQ  PP+GRG PPP     PP QFS    G  PPQ
Sbjct: 181 GGQG-PPMGRGPPPPYGMRPPPQQFS----GPPPPQ 202

[Close]
BLAST of PI0027290 vs. TAIR 10
Match: AT4G20440.3 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 300.8 bits (769), Expect = 9.2e-82
Identity = 174/216 (80.56%), Postives = 183/216 (84.72%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPPIGRGMPPPV----PPPQFSAARPGGAPPQ 210
            GQ  PP+GRG PPP     PP QFS    G  PPQ
Sbjct: 181 GGQG-PPMGRGPPPPYGMRPPPQQFS----GPPPPQ 202

[Close]
BLAST of PI0027290 vs. TAIR 10
Match: AT4G20440.4 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 300.8 bits (769), Expect = 9.2e-82
Identity = 174/216 (80.56%), Postives = 183/216 (84.72%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPPIGRGMPPPV----PPPQFSAARPGGAPPQ 210
            GQ  PP+GRG PPP     PP QFS    G  PPQ
Sbjct: 181 GGQG-PPMGRGPPPPYGMRPPPQQFS----GPPPPQ 202

[Close]
BLAST of PI0027290 vs. TAIR 10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 279.6 bits (714), Expect = 2.2e-75
Identity = 164/227 (72.25%), Postives = 176/227 (77.53%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKT 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKT
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60

Query: 61  NEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTA 120
           NEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +  A+AGPGIGRAAGRG+PT 
Sbjct: 61  NEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTG 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PM 180
           PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP               +IRPPGQM   P 
Sbjct: 121 PLVQAQPGLSGPVRGIGGPAPGMMQPQISRPP--------------QIIRPPGQMPPQPP 180

Query: 181 FPGQAPPPIGRGMPPPV---PPPQFSAAR-------PGG---APPQP 211
           F GQ  PP   GM PP    PPPQ+   +       PGG    PP P
Sbjct: 181 FAGQGGPPPPYGMRPPYPGPPPPQYGGQQRPMMIPPPGGMMRGPPPP 213

The following BLAST results are available for this feature:
BLAST of PI0027290 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9TU671.5e-4453.24Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=... [more]
P146781.5e-4453.24Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=... [more]
Q9N1Q01.5e-4452.31Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=931... [more]
P270481.5e-4453.24Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus OX=10090 GN... [more]
P171361.5e-4453.24Small nuclear ribonucleoprotein-associated protein B OS=Rattus norvegicus OX=101... [more]
BLAST of PI0027290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3AZK21.1e-109100.00Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LO... [more]
A0A6J1EJ142.3e-10999.06Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662... [more]
A0A0A0KPA94.0e-10999.06Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN... [more]
A0A5A7UAP68.9e-109100.00Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa O... [more]
A0A6J1IQN31.7e-10797.18Small nuclear ribonucleoprotein-associated protein OS=Cucurbita maxima OX=3661 G... [more]
BLAST of PI0027290 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882444.17.5e-11099.53small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >... [more]
XP_008439504.12.2e-109100.00PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis... [more]
XP_022925730.14.8e-10999.06small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] ... [more]
XP_004134546.18.3e-10999.06small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN4949... [more]
KAA0052454.11.8e-108100.00small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. ... [more]
BLAST of PI0027290 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G20440.19.2e-8280.56small nuclear ribonucleoprotein associated protein B [more]
AT4G20440.29.2e-8280.56small nuclear ribonucleoprotein associated protein B [more]
AT4G20440.39.2e-8280.56small nuclear ribonucleoprotein associated protein B [more]
AT4G20440.49.2e-8280.56small nuclear ribonucleoprotein associated protein B [more]
AT5G44500.12.2e-7572.25Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 7..84
e-value: 4.5E-22
score: 89.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 9..83
e-value: 5.1E-19
score: 67.7
NoneNo IPR availableGENE3D2.30.30.100coord: 1..93
e-value: 3.9E-33
score: 115.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..210
NoneNo IPR availablePANTHERPTHR10701:SF14SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEINcoord: 1..212
NoneNo IPR availablePANTHERPTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND Ncoord: 1..212
NoneNo IPR availableCDDcd01717Sm_Bcoord: 5..85
e-value: 2.64069E-54
score: 166.958
IPR017131Small ribonucleoprotein associated, SmB/SmNPIRSFPIRSF037187SmB_SmNcoord: 1..216
e-value: 9.6E-84
score: 278.6
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0027290.1PI0027290.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
molecular_function GO:0003723 RNA binding