PI0027272 (gene) Melon (PI 482460) v1

Overview


Name	PI0027272
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	CCHC-type domain-containing protein
Location	chr07: 19075262 .. 19075588 (-)
RNA-Seq Expression	PI0027272
Synteny	PI0027272

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACCTGCAAAAGAGGTCTGGGATGCATTACAAAAGAAGTATAATACAGAGGAAGCCAGATCCAAGAAGTACGTGGTAAGTAGATACTTGCGGTATCAAATGATTGACGACAGATCAGTGGAGGCTCAATCACACGAGATACAAAAAATTGCACATGACATAATCAACAAAGATATGTCACTCGATGAACAATTTCAAGTTGTTATTATTGACAAGCTACCTTCACTGTGGAAGGATTTTAAGAACACTCTAAGGCATAAGACGAAGAAGTTCTCTATAGAGAGTCTTATCACTTGGCTAAGGATTGAGGAGGAGGCTAGATAG

mRNA sequence

ATGTCACCTGCAAAAGAGGTCTGGGATGCATTACAAAAGAAGTATAATACAGAGGAAGCCAGATCCAAGAAGTACGTGGTAAGTAGATACTTGCGGTATCAAATGATTGACGACAGATCAGTGGAGGCTCAATCACACGAGATACAAAAAATTGCACATGACATAATCAACAAAGATATGTCACTCGATGAACAATTTCAAGTTGTTATTATTGACAAGCTACCTTCACTGTGGAAGGATTTTAAGAACACTCTAAGGCATAAGACGAAGAAGTTCTCTATAGAGAGTCTTATCACTTGGCTAAGGATTGAGGAGGAGGCTAGATAG

Coding sequence (CDS)

ATGTCACCTGCAAAAGAGGTCTGGGATGCATTACAAAAGAAGTATAATACAGAGGAAGCCAGATCCAAGAAGTACGTGGTAAGTAGATACTTGCGGTATCAAATGATTGACGACAGATCAGTGGAGGCTCAATCACACGAGATACAAAAAATTGCACATGACATAATCAACAAAGATATGTCACTCGATGAACAATTTCAAGTTGTTATTATTGACAAGCTACCTTCACTGTGGAAGGATTTTAAGAACACTCTAAGGCATAAGACGAAGAAGTTCTCTATAGAGAGTCTTATCACTTGGCTAAGGATTGAGGAGGAGGCTAGATAG

Protein sequence

MSPAKEVWDALQKKYNTEEARSKKYVVSRYLRYQMIDDRSVEAQSHEIQKIAHDIINKDMSLDEQFQVVIIDKLPSLWKDFKNTLRHKTKKFSIESLITWLRIEEEAR

Homology

[Close]

BLAST of PI0027272 vs. ExPASy TrEMBL
Match: A0A5A7UYY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00440 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-40
Identity = 91/109 (83.49%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MSPAKEVWDALQKKYNTEEARSKKYVVSRYLRYQMIDDRSVEAQSHEIQKIAHDIINKDM 60
           M+ AKEVWDALQKKY+TEEA SKKY VSRYLRYQM DD+SVEAQSHEIQKIAH+II++ M
Sbjct: 94  MTTAKEVWDALQKKYDTEEAGSKKYAVSRYLRYQMTDDKSVEAQSHEIQKIAHEIISEGM 153

Query: 61  SLDEQFQ-VVIIDKLPSLWKDFKNTLRHKTKKFSIESLITWLRIEEEAR 109
            LD+QFQ VVIIDKLP LWKDFKNTLRHKTK+FS+ESLIT LRIEEEAR
Sbjct: 154 PLDDQFQVVVIIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIEEEAR 202

[Close]

BLAST of PI0027272 vs. ExPASy TrEMBL
Match: A0A5D3DC59 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00340 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.2e-40
Identity = 88/109 (80.73%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MSPAKEVWDALQKKYNTEEARSKKYVVSRYLRYQMIDDRSVEAQSHEIQKIAHDIINKDM 60
           M+  KEVWDALQKKY+T+EARSKKY VSRYLRYQM DD+SVE QSHEIQKIAH+II++ M
Sbjct: 94  MTTGKEVWDALQKKYDTKEARSKKYAVSRYLRYQMTDDKSVETQSHEIQKIAHEIISEGM 153

Query: 61  SLDEQFQV-VIIDKLPSLWKDFKNTLRHKTKKFSIESLITWLRIEEEAR 109
            LD+QFQV VIIDKLP LWKDFKNTLRHKTK+FS+ESLIT L+IEEEAR
Sbjct: 154 PLDDQFQVAVIIDKLPQLWKDFKNTLRHKTKEFSLESLITRLKIEEEAR 202

[Close]

BLAST of PI0027272 vs. ExPASy TrEMBL
Match: A0A5D3CPF2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001350 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.2e-40
Identity = 90/109 (82.57%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MSPAKEVWDALQKKYNTEEARSKKYVVSRYLRYQMIDDRSVEAQSHEIQKIAHDIINKDM 60
           M+ AKEVWD LQKKY+TEEARSKKY VSRYLRYQM DDR VEAQSHEIQKIAH+II++ M
Sbjct: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60

Query: 61  SLDEQFQ-VVIIDKLPSLWKDFKNTLRHKTKKFSIESLITWLRIEEEAR 109
            LD+QFQ VVIIDKLP LWKDFKNTLR+KTK+FS+ESLIT LRIEEEAR
Sbjct: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEAR 109

[Close]

BLAST of PI0027272 vs. ExPASy TrEMBL
Match: A0A5A7SXC2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00540 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   MSPAKEVWDALQKKYNTEEARSKKYVVSRYLRYQMIDDRSVEAQSHEIQKIAHDIINKDM 60
           M+ AKEVWDALQKKY+ EE  SKKY VSRYL+YQM DD+SVEAQSHEIQKIAH+II++ M
Sbjct: 30  MTTAKEVWDALQKKYDIEEVGSKKYNVSRYLKYQMTDDKSVEAQSHEIQKIAHEIISEGM 89

Query: 61  SLDEQFQVVIIDKLPSLWKDFKNTLRHKTKKFSIESLITWLRIEEEAR 109
            LD+QFQVVIIDKLP LWKDFKNTLRHKTK+FS+ESLIT LRIEEE R
Sbjct: 90  PLDDQFQVVIIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIEEEVR 137

[Close]

BLAST of PI0027272 vs. ExPASy TrEMBL
Match: A0A5D3BDS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00230 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 87/109 (79.82%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MSPAKEVWDALQKKYNTEEARSKKYVVSRYLRYQMIDDRSVEAQSHEIQKIAHDIINKDM 60
           M+ AK+VW+ALQKKY+TEEA SKKY VSRYLRYQM DDRSVEAQSHEIQKIAH+IIN+ M
Sbjct: 90  MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 149

Query: 61  SLDEQFQV-VIIDKLPSLWKDFKNTLRHKTKKFSIESLITWLRIEEEAR 109
            LD+QFQV +IIDKLP LWKDFKNTLRHKTK+FS+E+LIT L+IEEEA+
Sbjct: 150 PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAK 198

[Close]

BLAST of PI0027272 vs. NCBI nr
Match: KAA0060458.1 (uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa] >TYK18543.1 uncharacterized protein E5676_scaffold119G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 2.9e-40
Identity = 91/109 (83.49%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MSPAKEVWDALQKKYNTEEARSKKYVVSRYLRYQMIDDRSVEAQSHEIQKIAHDIINKDM 60
           M+ AKEVWDALQKKY+TEEA SKKY VSRYLRYQM DD+SVEAQSHEIQKIAH+II++ M
Sbjct: 94  MTTAKEVWDALQKKYDTEEAGSKKYAVSRYLRYQMTDDKSVEAQSHEIQKIAHEIISEGM 153

Query: 61  SLDEQFQ-VVIIDKLPSLWKDFKNTLRHKTKKFSIESLITWLRIEEEAR 109
            LD+QFQ VVIIDKLP LWKDFKNTLRHKTK+FS+ESLIT LRIEEEAR
Sbjct: 154 PLDDQFQVVVIIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIEEEAR 202

[Close]

BLAST of PI0027272 vs. NCBI nr
Match: KAA0049683.1 (uncharacterized protein E6C27_scaffold76G00220 [Cucumis melo var. makuwa] >TYK12189.1 uncharacterized protein E5676_scaffold106G001350 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 90/109 (82.57%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MSPAKEVWDALQKKYNTEEARSKKYVVSRYLRYQMIDDRSVEAQSHEIQKIAHDIINKDM 60
           M+ AKEVWD LQKKY+TEEARSKKY VSRYLRYQM DDR VEAQSHEIQKIAH+II++ M
Sbjct: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60

Query: 61  SLDEQFQ-VVIIDKLPSLWKDFKNTLRHKTKKFSIESLITWLRIEEEAR 109
            LD+QFQ VVIIDKLP LWKDFKNTLR+KTK+FS+ESLIT LRIEEEAR
Sbjct: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEAR 109

[Close]

BLAST of PI0027272 vs. NCBI nr
Match: KAA0065374.1 (uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa] >TYK20869.1 uncharacterized protein E5676_scaffold682G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 88/109 (80.73%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MSPAKEVWDALQKKYNTEEARSKKYVVSRYLRYQMIDDRSVEAQSHEIQKIAHDIINKDM 60
           M+  KEVWDALQKKY+T+EARSKKY VSRYLRYQM DD+SVE QSHEIQKIAH+II++ M
Sbjct: 94  MTTGKEVWDALQKKYDTKEARSKKYAVSRYLRYQMTDDKSVETQSHEIQKIAHEIISEGM 153

Query: 61  SLDEQFQV-VIIDKLPSLWKDFKNTLRHKTKKFSIESLITWLRIEEEAR 109
            LD+QFQV VIIDKLP LWKDFKNTLRHKTK+FS+ESLIT L+IEEEAR
Sbjct: 154 PLDDQFQVAVIIDKLPQLWKDFKNTLRHKTKEFSLESLITRLKIEEEAR 202

[Close]

BLAST of PI0027272 vs. NCBI nr
Match: KAA0035842.1 (uncharacterized protein E6C27_scaffold56G00030 [Cucumis melo var. makuwa] >TYK30290.1 uncharacterized protein E5676_scaffold344G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 2.5e-39
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   MSPAKEVWDALQKKYNTEEARSKKYVVSRYLRYQMIDDRSVEAQSHEIQKIAHDIINKDM 60
           M+ AKEVWDALQKKY+ EE  SKKY VSRYL+YQM DD+SVEAQSHEIQKIAH+II++ M
Sbjct: 30  MTTAKEVWDALQKKYDIEEVGSKKYNVSRYLKYQMTDDKSVEAQSHEIQKIAHEIISEGM 89

Query: 61  SLDEQFQVVIIDKLPSLWKDFKNTLRHKTKKFSIESLITWLRIEEEAR 109
            LD+QFQVVIIDKLP LWKDFKNTLRHKTK+FS+ESLIT LRIEEE R
Sbjct: 90  PLDDQFQVVIIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIEEEVR 137

[Close]

BLAST of PI0027272 vs. NCBI nr
Match: TYJ98000.1 (hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 4.3e-39
Identity = 87/109 (79.82%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MSPAKEVWDALQKKYNTEEARSKKYVVSRYLRYQMIDDRSVEAQSHEIQKIAHDIINKDM 60
           M+ AK+VW+ALQKKY+TEEA SKKY VSRYLRYQM DDRSVEAQSHEIQKIAH+IIN+ M
Sbjct: 90  MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 149

Query: 61  SLDEQFQV-VIIDKLPSLWKDFKNTLRHKTKKFSIESLITWLRIEEEAR 109
            LD+QFQV +IIDKLP LWKDFKNTLRHKTK+FS+E+LIT L+IEEEA+
Sbjct: 150 PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAK 198

[Close]

BLAST of PI0027272 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-10
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 4   AKEVWDALQKKYNTEEARSKKYVVSRYLRYQMIDDRSVEAQSHEIQKIAHDIINKDMSLD 63
           AKE+WD L+  Y  +E++SK+  V +Y+ ++M+++R +  Q     KIA  I++  M LD
Sbjct: 283 AKELWDELKWVYQCDESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLD 342

Query: 64  EQFQV-VIIDKLPSLWKDFKNTLRHKTKKFSIESLITWLRIE 105
           E F V  II K P  W+ F   L  +      E L  W+ +E
Sbjct: 343 EAFHVSTIISKFPPSWRGFCTRLMEE------EYLPVWMLME 378

The following BLAST results are available for this feature:

BLAST of PI0027272 vs.


Match Name	E-value	Identity	Description

BLAST of PI0027272 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYY4	1.4e-40	83.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DC59	9.2e-40	80.73	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3CPF2	9.2e-40	82.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SXC2	1.2e-39	80.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDS3	2.1e-39	79.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0027272 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060458.1	2.9e-40	83.49	uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0049683.1	1.9e-39	82.57	uncharacterized protein E6C27_scaffold76G00220 [Cucumis melo var. makuwa] >TYK12...	[more]
KAA0065374.1	1.9e-39	80.73	uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa] >TYK20...	[more]
KAA0035842.1	2.5e-39	80.56	uncharacterized protein E6C27_scaffold56G00030 [Cucumis melo var. makuwa] >TYK30...	[more]
TYJ98000.1	4.3e-39	79.82	hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]	[more]

BLAST of PI0027272 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	2.6e-10	35.29	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 4..108 e-value: 7.2E-15 score: 55.0
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 3..108
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 3..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027272.1	PI0027272.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding