PI0027160 (gene) Melon (PI 482460) v1

Overview
NamePI0027160
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description50S ribosomal protein L35
Locationchr02: 20886138 .. 20888469 (-)
RNA-Seq ExpressionPI0027160
SyntenyPI0027160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCGAACAGCAGGCCGAGTCTGAGGCTCGTAGAGATTGGTAAGAAGAAGAAGAAGAAGAAGAAAGTCGAGACGCTTCGAAACTTCAGAAGCTATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCGCCACTCTGCTCTCGCCCATCATTTCGCATCTCTCATACTTCCGTCGGGCTTGCTTCTTTCAACAAGGTCAATTCCTTGAAGCTTAGTTCCTCCCACAACATTTCCGGCTTTGGACTCAATTTCCTTCAGAAGCCACCTCACATTTCTCCCACTTCTCAAATTCATACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGTCTCTCCACCACTCTCTCTTCTCTATATTTTTGTCTGGTTTAATTCTGGTTGGATTCTGATTAATTTGAAGCTAATTTCAGTTTTCTAGATAGTTTGAACATGTTTAGTTTTTTATTTTAATCGAATTTGTATTATGATTCGAGAATGGCATGTTGAATTTTAACTATCCTTTAAATTACCCAATTCTAGACGCTTACTGAATGAGCTAATATCATTATGAATTGTTGAACAATACGCGTCTGTCTGCTCTGTTTTGTACTGGGATTTTCCCCTTTTTATTTTTATTTTATTGTTTGGTGTTACTGTTTAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACGCAAAGAGGAGATTACGGCTTTCCAAAATGGTATGTCTTCTTTATTTATTTTTATGTTCATGATTCTGTATTTGTTATGCGGCATTTCTAAACTTAGGTCCTTGAGTTTTTCTGGGAAAGGGTTTATATAAATGGTCAAAACTTGGCCCATGTAGCCACTATTTTCAATTCCTATGATTCTTCTATAAATGATCTACCATTTTCCCTCTCTTGGATGCAAGTTATCAAAGTAGTTCTGTGAAGAATCTTACCGAAGTTGGAATGTACTTCATCATTTGATTCAATCCCGATCATATTGTCAGCTAATGACCTGCATTCCAACTCAATTAACTTAGTTTCGGAAGTATGATCTGATTTGAAGTTATTCATCGATTGTCATGGTTTGTTCAGTCAATAATCCCCAGAGCTATCATTGATGGTGATCTTGAAAATTTTCACAAAGATCATTTAGGAAACAAATTTTGTTTCGTTTTGGTATTCTTAAGTGCCCAAGACCTTATCTAGGAACCCCAAGCGCAAGAAAATATAGCTTCAACATACCTTTGGTTTTGGATCTTCAAAATTTTGTACACTAGCTAGTGTTGATTGGTTTTTTGTTGGTTGCTTCTGACAGAAATGGATAACCAATGCAAGGGGGGATATAAAGGGTACAATTTTCTTCCAACCTTGAACATTTTGGAGGGAGGGGTTCAAGAGACAAGATGACTTTTTTGCTATCACTTTCTCAGTTGATTTCTTGTAGTTGTAGTAATGGCTTACTCTGTAGATGCTTATGAGAGCATTAAAAGCAGTTCCTTATGGCCTTTTGTTAAAATCTGATTCTATCTTGATTGTTACTGCTGGTTTTGTCTTCTGTTTTTCCCTGACCATAGAGACATTTTGCGTTTCTATCATGTAGCATATGGTTAGTGAACTCTTAGATCTACAAAATACTTCACCTAGAAATTCCTTTTATCAACAATGTTCACACATAAGATTCTGATACAAACACAAACTTCCTTGATATACAATGATCTGACCGTCCTATCCAGCCTCATCAATTGACAATACAAAATGAAGGTAAGAAATCCGAGGAGGAAAATGATTTCCGGCACTTGTTTTGTTGAATGATGACCCCTTTGTAAAATTGATAGTGTAAGGCAAATCAACTAATTCTCATGCAGTTGTTCTATGTCTAGTTATGTTACTCAGTGTTTTCTTGATTGGTTTCTGTCTTAACACAGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCAAGTAGAAGTGATCTTGGGATCTTGCCTGTACTTAACTTCATTTTGTAACCAAATGATTTTCAATTTTCCAGAAATCATCAAAGGGCAAAGTTTGATTGCTTAAAAATATTATTTGTTCTATTTATTCCCTCAGTTGATAATGGTACCTACTACCTTCTTTCAGTTCCCTTCCTCTATTGTTGGCTAATCTGACAGGCTACAAGATGGAGCTTATTTCTTCTGTAAATTATGAGTACCTGAGATGGTTCTTTTGCCCATATGGAAAATATCTGGTTCGTTTGCTT

mRNA sequence

TCCGAACAGCAGGCCGAGTCTGAGGCTCGTAGAGATTGGTAAGAAGAAGAAGAAGAAGAAGAAAGTCGAGACGCTTCGAAACTTCAGAAGCTATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCGCCACTCTGCTCTCGCCCATCATTTCGCATCTCTCATACTTCCGTCGGGCTTGCTTCTTTCAACAAGGTCAATTCCTTGAAGCTTAGTTCCTCCCACAACATTTCCGGCTTTGGACTCAATTTCCTTCAGAAGCCACCTCACATTTCTCCCACTTCTCAAATTCATACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCAAGTAGAAGTGATCTTGGGATCTTGCCTGTACTTAACTTCATTTTGTAACCAAATGATTTTCAATTTTCCAGAAATCATCAAAGGGCAAAGTTTGATTGCTTAAAAATATTATTTGTTCTATTTATTCCCTCAGTTGATAATGGTACCTACTACCTTCTTTCAGTTCCCTTCCTCTATTGTTGGCTAATCTGACAGGCTACAAGATGGAGCTTATTTCTTCTGTAAATTATGAGTACCTGAGATGGTTCTTTTGCCCATATGGAAAATATCTGGTTCGTTTGCTT

Coding sequence (CDS)

ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCGCCACTCTGCTCTCGCCCATCATTTCGCATCTCTCATACTTCCGTCGGGCTTGCTTCTTTCAACAAGGTCAATTCCTTGAAGCTTAGTTCCTCCCACAACATTTCCGGCTTTGGACTCAATTTCCTTCAGAAGCCACCTCACATTTCTCCCACTTCTCAAATTCATACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCAAGTAG

Protein sequence

MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Homology
[Close]
BLAST of PI0027160 vs. ExPASy Swiss-Prot
Match: Q8VZ55 (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.9e-33
Identity = 95/152 (62.50%), Postives = 106/152 (69.74%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRIS-HTSVGLASFNKVNSLKLSSSHNISGFGLNFLQK 60
           MAS SMA S  + F       S ++S  +SV  A+        LSSSH+ISG       K
Sbjct: 1   MASLSMA-SVNVSFCHPLRSSSPKVSLRSSVHFAT-------SLSSSHSISGLRAVLPLK 60

Query: 61  PPHI-SPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAK 120
              + SP SQ    FTVFA KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN K
Sbjct: 61  ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNK 120

Query: 121 RRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           R+LRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 RKLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

[Close]
BLAST of PI0027160 vs. ExPASy Swiss-Prot
Match: P23326 (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.3e-32
Identity = 96/160 (60.00%), Postives = 109/160 (68.12%), Query Frame = 0 

Query: 1   MASASMAVSF---GLRFSPLCSRPSFRISHT-SVGLASFNK--VNSLKLSSSHNISGFGL 60
           MASA+  +SF    L  SP    PS R S    + L  FNK   ++L LSSS +IS   +
Sbjct: 3   MASATATLSFKTPSLSLSP----PSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKV 62

Query: 61  N-FLQKPPHISPT-SQIHT---PFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQ 120
              + K   IS   S + T    FTVFAAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQ
Sbjct: 63  QPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQ 122

Query: 121 HLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQ 150
           HLL KKN KR+ RLSK+  V RSDYDNVIGALPYLKVNR+
Sbjct: 123 HLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158

[Close]
BLAST of PI0027160 vs. ExPASy Swiss-Prot
Match: Q31NR1 (50S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpmI PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+   V  +D + V   L
Sbjct: 3   KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQPEVVHETDQERVKLML 62

Query: 142 PY 144
           PY
Sbjct: 63  PY 64

[Close]
BLAST of PI0027160 vs. ExPASy Swiss-Prot
Match: Q5N5F4 (50S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpmI PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+   V  +D + V   L
Sbjct: 3   KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQPEVVHETDQERVKLML 62

Query: 142 PY 144
           PY
Sbjct: 63  PY 64

[Close]
BLAST of PI0027160 vs. ExPASy Swiss-Prot
Match: Q8YRL9 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpmI PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.9e-09
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K   ++ + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]
BLAST of PI0027160 vs. ExPASy TrEMBL
Match: A0A1S3B9R8 (50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.6e-74
Identity = 147/151 (97.35%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60
           MASASMAVSFGLRFSPLCSRPSFR+SHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  PHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
            HISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of PI0027160 vs. ExPASy TrEMBL
Match: A0A5D3B7R7 (50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00400 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.8e-70
Identity = 142/151 (94.04%), Postives = 146/151 (96.69%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60
           MASASMAVSFGLRFSPLCSRPSFR+SHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQK 
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKL 60

Query: 61  PHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
            HISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSK+HPVSRSDYDNVIGALPYLK + + K
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKNSSKGK 151

[Close]
BLAST of PI0027160 vs. ExPASy TrEMBL
Match: A0A0A0LYX0 (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.1e-70
Identity = 142/151 (94.04%), Postives = 145/151 (96.03%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60
           MASASMAVSFGLRFSPLCSRPSFR+SHTSVG+AS NKVNSLKLSSSHNISGFG N LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  PHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
            HISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNAKRR
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of PI0027160 vs. ExPASy TrEMBL
Match: A0A6J1C550 (50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 7.0e-62
Identity = 131/152 (86.18%), Postives = 137/152 (90.13%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRISHTSVGLA-SFNKVNSLKLSSSHNISGFGLNFLQK 60
           MASAS  VSFGLRFSPLCSRPS R+SH SV LA SFNKVNSL+L SS NISGFG+  LQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKR 120
             HI+PTSQ+HTP TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 RLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           +LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152

[Close]
BLAST of PI0027160 vs. ExPASy TrEMBL
Match: A0A6J1JDG6 (50S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111485794 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.3e-60
Identity = 126/151 (83.44%), Postives = 135/151 (89.40%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60
           MASAS +VSFGLRFSPLCSR S R+S  SV L S NK  SL+LSSSHN+S FG+  LQKP
Sbjct: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60

Query: 61  PHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
            HI+P+S+IHTPFTV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR+
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of PI0027160 vs. NCBI nr
Match: XP_008443834.1 (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo])

HSP 1 Score: 287.3 bits (734), Expect = 7.4e-74
Identity = 147/151 (97.35%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60
           MASASMAVSFGLRFSPLCSRPSFR+SHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  PHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
            HISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of PI0027160 vs. NCBI nr
Match: KAA0035109.1 (50S ribosomal protein L35 [Cucumis melo var. makuwa] >TYJ95970.1 50S ribosomal protein L35 [Cucumis melo var. makuwa])

HSP 1 Score: 275.0 bits (702), Expect = 3.8e-70
Identity = 142/151 (94.04%), Postives = 146/151 (96.69%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60
           MASASMAVSFGLRFSPLCSRPSFR+SHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQK 
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKL 60

Query: 61  PHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
            HISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSK+HPVSRSDYDNVIGALPYLK + + K
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKNSSKGK 151

[Close]
BLAST of PI0027160 vs. NCBI nr
Match: XP_004146668.1 (50S ribosomal protein L35, chloroplastic [Cucumis sativus] >KGN65186.1 hypothetical protein Csa_019888 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 8.5e-70
Identity = 142/151 (94.04%), Postives = 145/151 (96.03%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60
           MASASMAVSFGLRFSPLCSRPSFR+SHTSVG+AS NKVNSLKLSSSHNISGFG N LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  PHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
            HISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNAKRR
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]
BLAST of PI0027160 vs. NCBI nr
Match: XP_038878434.1 (50S ribosomal protein L35, chloroplastic [Benincasa hispida])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 139/151 (92.05%), Postives = 143/151 (94.70%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60
           MASASMAVS GLRFSPL SRPS R+SH+SVGLASFNK NSLKLSSS+NISGFG+ FLQKP
Sbjct: 1   MASASMAVSCGLRFSPLYSRPSVRVSHSSVGLASFNKGNSLKLSSSNNISGFGVTFLQKP 60

Query: 61  PHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
            HISPT QIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KRR
Sbjct: 61  SHISPTPQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]
BLAST of PI0027160 vs. NCBI nr
Match: XP_022135558.1 (50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 246.5 bits (628), Expect = 1.5e-61
Identity = 131/152 (86.18%), Postives = 137/152 (90.13%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRISHTSVGLA-SFNKVNSLKLSSSHNISGFGLNFLQK 60
           MASAS  VSFGLRFSPLCSRPS R+SH SV LA SFNKVNSL+L SS NISGFG+  LQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKR 120
             HI+PTSQ+HTP TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 RLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           +LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152

[Close]
BLAST of PI0027160 vs. TAIR 10
Match: AT2G24090.1 (Ribosomal protein L35 )

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-34
Identity = 95/152 (62.50%), Postives = 106/152 (69.74%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRIS-HTSVGLASFNKVNSLKLSSSHNISGFGLNFLQK 60
           MAS SMA S  + F       S ++S  +SV  A+        LSSSH+ISG       K
Sbjct: 1   MASLSMA-SVNVSFCHPLRSSSPKVSLRSSVHFAT-------SLSSSHSISGLRAVLPLK 60

Query: 61  PPHI-SPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAK 120
              + SP SQ    FTVFA KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN K
Sbjct: 61  ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNK 120

Query: 121 RRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           R+LRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 RKLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

The following BLAST results are available for this feature:
BLAST of PI0027160 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VZ553.9e-3362.5050S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3... [more]
P233264.3e-3260.0050S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 P... [more]
Q31NR13.0e-0954.8450S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-80... [more]
Q5N5F43.0e-0954.8450S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / S... [more]
Q8YRL93.9e-0955.5650S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576... [more]
BLAST of PI0027160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B9R83.6e-7497.3550S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1[more]
A0A5D3B7R71.8e-7094.0450S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0LYX04.1e-7094.0450S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1[more]
A0A6J1C5507.0e-6286.1850S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV... [more]
A0A6J1JDG62.3e-6083.4450S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111485794 PE=3 SV=1[more]
BLAST of PI0027160 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008443834.17.4e-7497.35PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo][more]
KAA0035109.13.8e-7094.0450S ribosomal protein L35 [Cucumis melo var. makuwa] >TYJ95970.1 50S ribosomal p... [more]
XP_004146668.18.5e-7094.0450S ribosomal protein L35, chloroplastic [Cucumis sativus] >KGN65186.1 hypotheti... [more]
XP_038878434.11.8e-6792.0550S ribosomal protein L35, chloroplastic [Benincasa hispida][more]
XP_022135558.11.5e-6186.1850S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia][more]
BLAST of PI0027160 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G24090.12.8e-3462.50Ribosomal protein L35 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001706Ribosomal protein L35, non-mitochondrialPRINTSPR00064RIBOSOMALL35coord: 100..114
score: 48.25
coord: 82..99
score: 61.11
coord: 115..133
score: 31.83
IPR001706Ribosomal protein L35, non-mitochondrialTIGRFAMTIGR00001TIGR00001coord: 81..143
e-value: 3.3E-22
score: 76.6
IPR001706Ribosomal protein L35, non-mitochondrialPANTHERPTHR3334354S RIBOSOMAL PROTEIN BL35Mcoord: 1..150
IPR001706Ribosomal protein L35, non-mitochondrialHAMAPMF_00514Ribosomal_L35coord: 80..143
score: 15.406336
IPR037229Ribosomal protein L35 superfamilyGENE3D4.10.410.60coord: 82..144
e-value: 8.8E-20
score: 73.0
IPR037229Ribosomal protein L35 superfamilySUPERFAMILY143034L35p-likecoord: 81..143
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 81..137
e-value: 2.4E-19
score: 69.6
NoneNo IPR availablePANTHERPTHR33343:SF350S RIBOSOMAL PROTEIN L35coord: 1..150
IPR018265Ribosomal protein L35, conserved sitePROSITEPS00936RIBOSOMAL_L35coord: 84..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0027160.1PI0027160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome