PI0027156 (gene) Melon (PI 482460) v1

Overview
NamePI0027156
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionLEA_2 domain-containing protein
Locationchr02: 3521419 .. 3522191 (-)
RNA-Seq ExpressionPI0027156
SyntenyPI0027156
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGACCGCGTCCATCCCACCGCCGATTCACCCCGTCCGAGCACCTCTTCCACCGTCTCCGACACCACTAAACCTCCCTCTCCACCTCCGGCACCTACGTCATCCAGCTCCCCAAAGACCAAATTTACCGCGTTCCTCCTCCCGAAAACGCTCACCGCTTCAAACTCTACACTCGCCAAAACCACCGCCACAACCGCTGCCGCTCCTGTCTCTTCTGGCTCCTCGGCATCCTCACCGTCCTCATCATCCTTCTAGGCATCACCGTCGCCGTTTTCTACTTAATCGTTCGCCCTAAATCACCTAACTACTCGATCGACGCCATTTCCATTTCCGGACTCAACTTAACATCCTCCTCCGCGATCTCGCCTGTATTCAATCTGACTGTTCGAGCGGATAATCCGAATAAGAAGATCGGAATCTATTACTTAACAGGTAGCTCAGTTGGAATCTATTTCTCTAACGAGAAACTTTCCGAGGGTGTTTTGCCTGATTTCTTTCAGCCTTCGAAGAATGTCAGTGTGTTTAGAATTTTTGTGAGAGGATCTGGTGTTAATTTGTCAAGTAGGGCGAAGAATGAGTTGATTGATTCAGTGAAACAGAGGGCGGTGGTGTTGAAGGTGGAGATTGGAGTTCCGATTAAGGTGAAAATTGGAGCGGTGAAGAGTTGGAAGATGAAAGTGAAGGTGAATTGTGACGTGACGGTGGATCAATTGACGGCGGCGGCGAAGATTGTTAAGAAGAATTGCGATTATAGTGTGAAGATTTGGTAG

mRNA sequence

ATGGCCGACCGCGTCCATCCCACCGCCGATTCACCCCGTCCGAGCACCTCTTCCACCGTCTCCGACACCACTAAACCTCCCTCTCCACCTCCGGCACCTACGTCATCCAGCTCCCCAAAGACCAAATTTACCGCGTTCCTCCTCCCGAAAACGCTCACCGCTTCAAACTCTACACTCGCCAAAACCACCGCCACAACCGCTGCCGCTCCTCCTTCGAAGAATGTCAGTGTGTTTAGAATTTTTGTGAGAGGATCTGGTGTTAATTTGTCAAGTAGGGCGAAGAATGAGTTGATTGATTCAGTGAAACAGAGGGCGGTGGTGTTGAAGGTGGAGATTGGAGTTCCGATTAAGGTGAAAATTGGAGCGGTGAAGAGTTGGAAGATGAAAGTGAAGGTGAATTGTGACGTGACGGTGGATCAATTGACGGCGGCGGCGAAGATTGTTAAGAAGAATTGCGATTATAGTGTGAAGATTTGGTAG

Coding sequence (CDS)

ATGGCCGACCGCGTCCATCCCACCGCCGATTCACCCCGTCCGAGCACCTCTTCCACCGTCTCCGACACCACTAAACCTCCCTCTCCACCTCCGGCACCTACGTCATCCAGCTCCCCAAAGACCAAATTTACCGCGTTCCTCCTCCCGAAAACGCTCACCGCTTCAAACTCTACACTCGCCAAAACCACCGCCACAACCGCTGCCGCTCCTCCTTCGAAGAATGTCAGTGTGTTTAGAATTTTTGTGAGAGGATCTGGTGTTAATTTGTCAAGTAGGGCGAAGAATGAGTTGATTGATTCAGTGAAACAGAGGGCGGTGGTGTTGAAGGTGGAGATTGGAGTTCCGATTAAGGTGAAAATTGGAGCGGTGAAGAGTTGGAAGATGAAAGTGAAGGTGAATTGTGACGTGACGGTGGATCAATTGACGGCGGCGGCGAAGATTGTTAAGAAGAATTGCGATTATAGTGTGAAGATTTGGTAG

Protein sequence

MADRVHPTADSPRPSTSSTVSDTTKPPSPPPAPTSSSSPKTKFTAFLLPKTLTASNSTLAKTTATTAAAPPSKNVSVFRIFVRGSGVNLSSRAKNELIDSVKQRAVVLKVEIGVPIKVKIGAVKSWKMKVKVNCDVTVDQLTAAAKIVKKNCDYSVKIW
Homology
BLAST of PI0027156 vs. ExPASy Swiss-Prot
Match: Q9ZVD2 (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-16
Identity = 38/89 (42.70%), Postives = 63/89 (70.79%), Query Frame = 0

Query: 71  PSKNVSVFRIFVRGSGVNLSSRAKNELIDSVKQRAVVLKVEIGVPIKVKIGAVKSWKMKV 130
           P+KNV+V ++ + GS + L+S  + E+ + V ++ V  K++I  P+K+K G+VK+W M V
Sbjct: 172 PAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIV 231

Query: 131 KVNCDVTVDQLTAAAKIVKKNCDYSVKIW 160
            V+CDVTVD+LTA ++IV + C + V +W
Sbjct: 232 NVDCDVTVDKLTAPSRIVSRKCSHDVDLW 260

BLAST of PI0027156 vs. ExPASy TrEMBL
Match: A0A5A7UIE7 (Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00310 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 114/261 (43.68%), Postives = 132/261 (50.57%), Query Frame = 0

Query: 1   MADRVHPTADSPRPSTSSTVSDTTKPPSPPPAPTSSSSPKTK------------------ 60
           MADRVHPT DSPRPSTSST+SDTTKPPSPPP       PK +                  
Sbjct: 1   MADRVHPTVDSPRPSTSSTLSDTTKPPSPPPGTYVIQLPKDQIYRVPPPENAHRFQLYTR 60

Query: 61  ---------------------------------FTAFLLPKT-------LTASNSTLAKT 120
                                            F   + PK+       ++ S   L  +
Sbjct: 61  QNRRRRNPCRSCLFCLLAILILLIILLGITVAVFYLVVRPKSPNYSIDAISVSGLNLLTS 120

Query: 121 TATTAAAP--------------------------------------------PSKNVSVF 160
           ++++A +P                                            P+KNVSV 
Sbjct: 121 SSSSAISPLFNLTVRADNPNKKIGIYYLTGSSVRIYFSNEKLSEGVLPDFFQPAKNVSVL 180

BLAST of PI0027156 vs. ExPASy TrEMBL
Match: A0A1S3BRG5 (protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103492469 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 114/261 (43.68%), Postives = 132/261 (50.57%), Query Frame = 0

Query: 1   MADRVHPTADSPRPSTSSTVSDTTKPPSPPPAPTSSSSPKTK------------------ 60
           MADRVHPT DSPRPSTSST+SDTTKPPSPPP       PK +                  
Sbjct: 1   MADRVHPTVDSPRPSTSSTLSDTTKPPSPPPGTYVIQLPKDQIYRVPPPENAHRFQLYTR 60

Query: 61  ---------------------------------FTAFLLPKT-------LTASNSTLAKT 120
                                            F   + PK+       ++ S   L  +
Sbjct: 61  QNRRRRNPCRSCLFCLLAILILLIILLGITVAVFYLVVRPKSPNYSIDAISVSGLNLLTS 120

Query: 121 TATTAAAP--------------------------------------------PSKNVSVF 160
           ++++A +P                                            P+KNVSV 
Sbjct: 121 SSSSAISPLFNLTVRADNPNKKIGIYYLTGSSVRIYFSNEKLSEGVLPDFFQPAKNVSVL 180

BLAST of PI0027156 vs. ExPASy TrEMBL
Match: A0A0A0LX01 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G601000 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.5e-33
Identity = 116/258 (44.96%), Postives = 130/258 (50.39%), Query Frame = 0

Query: 1   MADRVHPTADSPRPSTSSTVSDTTKPPSPPPAPTSSSSPKTK------------------ 60
           MADRVHPTADSPRPSTSST+SDTTKP SPPP       PK +                  
Sbjct: 1   MADRVHPTADSPRPSTSSTLSDTTKPSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTR 60

Query: 61  ---------------------------------FTAFLLPKT---------------LTA 120
                                            F   + PK+               LT+
Sbjct: 61  QSHRRRNRCRSCLFCLLAILAILIILLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTS 120

Query: 121 SNSTLAKTTATTAAAP---------------------------------PSKNVSVFRIF 160
           S  +     +  A  P                                 PSKNVSV R  
Sbjct: 121 SAISPVFNLSVRADNPNKKIGIYYLTGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAV 180

BLAST of PI0027156 vs. ExPASy TrEMBL
Match: A0A6J1HX04 (NDR1/HIN1-like protein 13 OS=Cucurbita maxima OX=3661 GN=LOC111467424 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 6.6e-26
Identity = 63/89 (70.79%), Postives = 76/89 (85.39%), Query Frame = 0

Query: 71  PSKNVSVFRIFVRGSGVNLSSRAKNELIDSVKQRAVVLKVEIGVPIKVKIGAVKSWKMKV 130
           P+KNV+VFR  VRGSGVNLS++A N +IDS  + AV  KVEI  PIK+KIG+VKSWK++V
Sbjct: 180 PAKNVTVFRSSVRGSGVNLSNKATNAMIDSQNRHAVPFKVEIRAPIKLKIGSVKSWKIRV 239

Query: 131 KVNCDVTVDQLTAAAKIVKKNCDYSVKIW 160
           KV CDVTVDQL+AAAKI+ KNCDYSVK+W
Sbjct: 240 KVFCDVTVDQLSAAAKIISKNCDYSVKLW 268

BLAST of PI0027156 vs. ExPASy TrEMBL
Match: A0A6J1F2Z0 (NDR1/HIN1-like protein 13 OS=Cucurbita moschata OX=3662 GN=LOC111439401 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 8.6e-26
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 0

Query: 71  PSKNVSVFRIFVRGSGVNLSSRAKNELIDSVKQRAVVLKVEIGVPIKVKIGAVKSWKMKV 130
           P KN++VFR  VRGSGVNLS++A N +IDS  + AV  KVEI  PIK+KIG+VKSWK++V
Sbjct: 180 PEKNITVFRSSVRGSGVNLSNKATNAMIDSQNRHAVPFKVEIRAPIKLKIGSVKSWKIRV 239

Query: 131 KVNCDVTVDQLTAAAKIVKKNCDYSVKIW 160
           KV CDVTVDQL+AAAKIV KNCDYSVK+W
Sbjct: 240 KVFCDVTVDQLSAAAKIVSKNCDYSVKLW 268

BLAST of PI0027156 vs. NCBI nr
Match: XP_008451090.1 (PREDICTED: protein YLS9-like [Cucumis melo] >KAA0055663.1 protein YLS9-like [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-34
Identity = 114/261 (43.68%), Postives = 132/261 (50.57%), Query Frame = 0

Query: 1   MADRVHPTADSPRPSTSSTVSDTTKPPSPPPAPTSSSSPKTK------------------ 60
           MADRVHPT DSPRPSTSST+SDTTKPPSPPP       PK +                  
Sbjct: 1   MADRVHPTVDSPRPSTSSTLSDTTKPPSPPPGTYVIQLPKDQIYRVPPPENAHRFQLYTR 60

Query: 61  ---------------------------------FTAFLLPKT-------LTASNSTLAKT 120
                                            F   + PK+       ++ S   L  +
Sbjct: 61  QNRRRRNPCRSCLFCLLAILILLIILLGITVAVFYLVVRPKSPNYSIDAISVSGLNLLTS 120

Query: 121 TATTAAAP--------------------------------------------PSKNVSVF 160
           ++++A +P                                            P+KNVSV 
Sbjct: 121 SSSSAISPLFNLTVRADNPNKKIGIYYLTGSSVRIYFSNEKLSEGVLPDFFQPAKNVSVL 180

BLAST of PI0027156 vs. NCBI nr
Match: XP_004144152.2 (LOW QUALITY PROTEIN: NDR1/HIN1-like protein 13 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 3.9e-33
Identity = 116/258 (44.96%), Postives = 130/258 (50.39%), Query Frame = 0

Query: 1   MADRVHPTADSPRPSTSSTVSDTTKPPSPPPAPTSSSSPKTK------------------ 60
           MADRVHPTADSPRPSTSST+SDTTKP SPPP       PK +                  
Sbjct: 1   MADRVHPTADSPRPSTSSTLSDTTKPSSPPPGTYVIQXPKDQIYRLPPPENAHRFKLYTR 60

Query: 61  ---------------------------------FTAFLLPKT---------------LTA 120
                                            F   + PK+               LT+
Sbjct: 61  QSHRRRNRCRSCLFCLLAILAILIILLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTS 120

Query: 121 SNSTLAKTTATTAAAP---------------------------------PSKNVSVFRIF 160
           S  +     +  A  P                                 PSKNVSV R  
Sbjct: 121 SAISPVFNLSVRADNPNKKIGIYYLTGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAV 180

BLAST of PI0027156 vs. NCBI nr
Match: KAE8653483.1 (hypothetical protein Csa_007184 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.8e-33
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = 0

Query: 71  PSKNVSVFRIFVRGSGVNLSSRAKNELIDSVKQRAVVLKVEIGVPIKVKIGAVKSWKMKV 130
           PSKNVSV R  VRG+GVNLSS AKNE+I+ VKQRAV+LKVEIGVPIKVKIG+VKSWK+KV
Sbjct: 145 PSKNVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAVLLKVEIGVPIKVKIGSVKSWKIKV 204

Query: 131 KVNCDVTVDQLTAAAKIVKKNCDYSVKIW 160
           KVNCDVTVD+LTAAAKIVKKNCDYSVKIW
Sbjct: 205 KVNCDVTVDELTAAAKIVKKNCDYSVKIW 233

BLAST of PI0027156 vs. NCBI nr
Match: XP_038879841.1 (NDR1/HIN1-like protein 13 [Benincasa hispida])

HSP 1 Score: 128.6 bits (322), Expect = 4.7e-26
Identity = 111/258 (43.02%), Postives = 125/258 (48.45%), Query Frame = 0

Query: 1   MADRVHPTADSPRPSTSSTVSDTTKPPSPPPAPTSSSSPKTK------------------ 60
           MADRVHP ADSPRPSTSSTVSD +KPPSPPP       PK +                  
Sbjct: 1   MADRVHP-ADSPRPSTSSTVSD-SKPPSPPPGTYVIQLPKDQIYRVPPPENAHRFQLYTR 60

Query: 61  --------------------------------FTAFLLPKT--------------LTASN 120
                                           F   + PK+              LTAS+
Sbjct: 61  RKQRRNRCCSCLFWLLGILTVLVILLGIAVAVFYLVVRPKSPNYSIDAIAISGLNLTASS 120

Query: 121 STLAKTT---ATTAAAP---------------------------------PSKNVSVFRI 159
           S++          A  P                                 PSKNV+VFR 
Sbjct: 121 SSVISPVFDLTVRADNPNKKIGIYYQTGSSVRIYFSDEKLSEGVLPDFFQPSKNVTVFRS 180

BLAST of PI0027156 vs. NCBI nr
Match: XP_023531236.1 (NDR1/HIN1-like protein 13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-25
Identity = 63/89 (70.79%), Postives = 76/89 (85.39%), Query Frame = 0

Query: 71  PSKNVSVFRIFVRGSGVNLSSRAKNELIDSVKQRAVVLKVEIGVPIKVKIGAVKSWKMKV 130
           P+KN++VFR  VRGSGVNLS++A N +IDS  + AV  KVEI  PIK+KIG+VKSWK++V
Sbjct: 180 PAKNITVFRSSVRGSGVNLSNKATNAMIDSQNRHAVPFKVEIRAPIKLKIGSVKSWKIRV 239

Query: 131 KVNCDVTVDQLTAAAKIVKKNCDYSVKIW 160
           KV CDVTVDQL+AAAKIV KNCDYSVK+W
Sbjct: 240 KVFCDVTVDQLSAAAKIVSKNCDYSVKLW 268

BLAST of PI0027156 vs. TAIR 10
Match: AT2G27080.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 85.5 bits (210), Expect = 4.2e-17
Identity = 38/89 (42.70%), Postives = 63/89 (70.79%), Query Frame = 0

Query: 71  PSKNVSVFRIFVRGSGVNLSSRAKNELIDSVKQRAVVLKVEIGVPIKVKIGAVKSWKMKV 130
           P+KNV+V ++ + GS + L+S  + E+ + V ++ V  K++I  P+K+K G+VK+W M V
Sbjct: 172 PAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIV 231

Query: 131 KVNCDVTVDQLTAAAKIVKKNCDYSVKIW 160
            V+CDVTVD+LTA ++IV + C + V +W
Sbjct: 232 NVDCDVTVDKLTAPSRIVSRKCSHDVDLW 260

BLAST of PI0027156 vs. TAIR 10
Match: AT2G27080.2 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 85.5 bits (210), Expect = 4.2e-17
Identity = 38/89 (42.70%), Postives = 63/89 (70.79%), Query Frame = 0

Query: 71  PSKNVSVFRIFVRGSGVNLSSRAKNELIDSVKQRAVVLKVEIGVPIKVKIGAVKSWKMKV 130
           P+KNV+V ++ + GS + L+S  + E+ + V ++ V  K++I  P+K+K G+VK+W M V
Sbjct: 172 PAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIV 231

Query: 131 KVNCDVTVDQLTAAAKIVKKNCDYSVKIW 160
            V+CDVTVD+LTA ++IV + C + V +W
Sbjct: 232 NVDCDVTVDKLTAPSRIVSRKCSHDVDLW 260

BLAST of PI0027156 vs. TAIR 10
Match: AT5G21130.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-12
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 0

Query: 56  NSTLAKTTATTAAAPPSKNVSVFRIFVRGSGVNLSSRAKNELIDSVKQRAVVLKVEIGVP 115
           N T       TA   P+ NV+V    ++GS V L S ++ EL +S K+  V   + I  P
Sbjct: 178 NGTKLGNGEFTAFKQPAGNVTVIVTVLKGSSVKLKSSSRKELTESQKKGKVPFGLRIKAP 237

Query: 116 IKVKIGAVKSWKMKVKVNCDVTVDQLTAAAKIVKKNCDYSVKI 159
           +K K+G+V +W M + V+C +TVD+LTA+A +  +NC+  + +
Sbjct: 238 VKFKVGSVTTWTMTITVDCKITVDKLTASATVKTENCETGLSL 280

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZVD25.9e-1642.70NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7UIE71.7e-3443.68Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00... [more]
A0A1S3BRG51.7e-3443.68protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103492469 PE=4 SV=1[more]
A0A0A0LX012.5e-3344.96LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G601000 PE=4 ... [more]
A0A6J1HX046.6e-2670.79NDR1/HIN1-like protein 13 OS=Cucurbita maxima OX=3661 GN=LOC111467424 PE=4 SV=1[more]
A0A6J1F2Z08.6e-2670.79NDR1/HIN1-like protein 13 OS=Cucurbita moschata OX=3662 GN=LOC111439401 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
XP_008451090.13.6e-3443.68PREDICTED: protein YLS9-like [Cucumis melo] >KAA0055663.1 protein YLS9-like [Cuc... [more]
XP_004144152.23.9e-3344.96LOW QUALITY PROTEIN: NDR1/HIN1-like protein 13 [Cucumis sativus][more]
KAE8653483.18.8e-3386.52hypothetical protein Csa_007184 [Cucumis sativus][more]
XP_038879841.14.7e-2643.02NDR1/HIN1-like protein 13 [Benincasa hispida][more]
XP_023531236.11.4e-2570.79NDR1/HIN1-like protein 13 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT2G27080.14.2e-1742.70Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [more]
AT2G27080.24.2e-1742.70Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [more]
AT5G21130.17.0e-1235.92Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availablePANTHERPTHR31852LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILYcoord: 67..157
NoneNo IPR availablePANTHERPTHR31852:SF220PROTEIN YLS9-LIKEcoord: 67..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0027156.1PI0027156.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane