PI0026998 (gene) Melon (PI 482460) v1

Overview


Name	PI0026998
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr05: 1058144 .. 1058921 (+)
RNA-Seq Expression	PI0026998
Synteny	PI0026998

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAATTGATCCTCTCCTCTTTATTTTCTTCTGGACATCAAAATATATAGAAAAAAATGGCTCCCATTTCAAGATTACCTTTTGTTTTGGGGTTGAAGAACCTTGGAGGTGATGGTGGAAATGGTTATGGCGAGGGATGTGATTGTGGTTATATTACTCTTGTTTTGATGGCAGAAGGAGACAGTGACGAAGATGACGATGGTGGCTACGACTTTGCTCCGGCTGCTTGAGTTTTGATTTGAGATCAGGAATTTGAAGAGAGAATGAGCATATATATTGGGTGGTAGGGAAAGATTGGCAAAAGAAAATTAGGGTCACAGTTACTTATATGCAACCTTGAATTATAATATTTTGTTAAAAGAGTTCTAGTTAATAATTAAATTTCATTCTTCTCGTTCTGAATTTCCATATTTATTTTACTTCGTCCTAAACATAAACCTCTTGAGATATGTATTATAAGTTTTTTTTTCACAAAGATAACGTATCTAAGCATGGAGTGGGGGAGTCGAAACTGTAACCTTAAGATCAATAGTACAAATTATATAAATTGATTGGAGTAGTGTTTAGGTGGGAACATATTTTAATGAAAAAATATTTATAAAAGAGTAGGAAAAGTAAAGTAGTTAATTTTAAAGGTTGAAAAATAATATTTTGGTCATGTATTTTTGGACTTATATAGTTTTATGTCAAATAACCCCATAACTCAAAATAAGATTTTTTAAAAAAAATTCAATGACTAATATGTCTCAATCATGGAAATTGTAGAATTAAATTTAC

mRNA sequence

TAATAATTGATCCTCTCCTCTTTATTTTCTTCTGGACATCAAAATATATAGAAAAAAATGGCTCCCATTTCAAGATTACCTTTTGTTTTGGGGTTGAAGAACCTTGGAGGTGATGGTGGAAATGGTTATGGCGAGGGATGTGATTGTGGTTATATTACTCTTGTTTTGATGGCAGAAGGAGACAGTGACGAAGATGACGATGGTGGCTACGACTTTGCTCCGGCTGCTTGAGTTTTGATTTGAGATCAGGAATTTGAAGAGAGAATGAGCATATATATTGGGTGGTAGGGAAAGATTGGCAAAAGAAAATTAGGGTCACAGTTACTTATATGCAACCTTGAATTATAATATTTTGTTAAAAGAGTTCTAGTTAATAATTAAATTTCATTCTTCTCGTTCTGAATTTCCATATTTATTTTACTTCGTCCTAAACATAAACCTCTTGAGATATGTATTATAAGTTTTTTTTTCACAAAGATAACGTATCTAAGCATGGAGTGGGGGAGTCGAAACTGTAACCTTAAGATCAATAGTACAAATTATATAAATTGATTGGAGTAGTGTTTAGGTGGGAACATATTTTAATGAAAAAATATTTATAAAAGAGTAGGAAAAGTAAAGTAGTTAATTTTAAAGGTTGAAAAATAATATTTTGGTCATGTATTTTTGGACTTATATAGTTTTATGTCAAATAACCCCATAACTCAAAATAAGATTTTTTAAAAAAAATTCAATGACTAATATGTCTCAATCATGGAAATTGTAGAATTAAATTTAC

Coding sequence (CDS)

ATGGCTCCCATTTCAAGATTACCTTTTGTTTTGGGGTTGAAGAACCTTGGAGGTGATGGTGGAAATGGTTATGGCGAGGGATGTGATTGTGGTTATATTACTCTTGTTTTGATGGCAGAAGGAGACAGTGACGAAGATGACGATGGTGGCTACGACTTTGCTCCGGCTGCTTGA

Protein sequence

MAPISRLPFVLGLKNLGGDGGNGYGEGCDCGYITLVLMAEGDSDEDDDGGYDFAPAA

Homology

[Close]

BLAST of PI0026998 vs. ExPASy TrEMBL
Match: A0A0A0LF41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005960 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.6e-20
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MAPISRLPFVLGLKNLGGDGGNGYGEGCDCGYITLVLMAEGDSDEDDDGGYDFAPAA 58
          MAPISRLP VLGLKNLGGDGG+GY EGCDCGY TLV MAEGDSD DDDGGYDFAPAA
Sbjct: 1  MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSD-DDDGGYDFAPAA 56

[Close]

BLAST of PI0026998 vs. NCBI nr
Match: KGN60650.1 (hypothetical protein Csa_019209 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MAPISRLPFVLGLKNLGGDGGNGYGEGCDCGYITLVLMAEGDSDEDDDGGYDFAPAA 58
          MAPISRLP VLGLKNLGGDGG+GY EGCDCGY TLV MAEGDSD DDDGGYDFAPAA
Sbjct: 1  MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSD-DDDGGYDFAPAA 56

[Close]

BLAST of PI0026998 vs. NCBI nr
Match: KAG6599418.1 (hypothetical protein SDJN03_09196, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 4.3e-06
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1   MAPISRLPFVLGLKNLGGDGGNGYGEGCDCGYITLVLMAEGDSDEDDDGGYDFAPAA 58
           M PIS+ P    L +LG  G +GYGE  DCGYI  V MA+ D D+DDD  YDFAPAA
Sbjct: 60  MVPISK-PMASWLTSLGA-GRHGYGERRDCGYIAPVSMAKEDGDDDDDDSYDFAPAA 114

The following BLAST results are available for this feature:

BLAST of PI0026998 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026998 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF41	5.6e-20	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005960 PE=4 SV=1	[more]

BLAST of PI0026998 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60650.1	1.2e-19	89.47	hypothetical protein Csa_019209 [Cucumis sativus]	[more]
KAG6599418.1	4.3e-06	57.89	hypothetical protein SDJN03_09196, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0026998 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026998.1	PI0026998.1	mRNA