PI0026994 (gene) Melon (PI 482460) v1

Overview


Name	PI0026994
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr11: 9700151 .. 9700543 (-)
RNA-Seq Expression	PI0026994
Synteny	PI0026994

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGCCAAGCGGTGGATATGTCCCCAGATGACATGGTAGGAACACGTGCAGGTCGATCAAGTGATGGGCGAAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACGTAATGAAACAGTGGAGGTGATCAGGAATGCAATGGACTTTGCAAATGATCAATTGAAGGCAATTGCGGATTGGCCAAAAGAGAATCGTGCAACGGAGGTCAAATTGCGTGTTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGCCGGGATAGGGTAAAGCTTCTACGAATATTATTCAGTAGTGTTGATGACACACAGGGATTCCTGTCGGTCCCAACGGAAATGAAATTGGAGTACTGCAGTATTTTGTTGGAAGAAAATGTTTGA

mRNA sequence

ATGTATAGCCAAGCGGTGGATATGTCCCCAGATGACATGGTAGGAACACGTGCAGGTCGATCAAGTGATGGGCGAAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACGTAATGAAACAGTGGAGGTGATCAGGAATGCAATGGACTTTGCAAATGATCAATTGAAGGCAATTGCGGATTGGCCAAAAGAGAATCGTGCAACGGAGGTCAAATTGCGTGTTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGCCGGGATAGGGTAAAGCTTCTACGAATATTATTCAGTAGTGTTGATGACACACAGGGATTCCTGTCGGTCCCAACGGAAATGAAATTGGAGTACTGCAGTATTTTGTTGGAAGAAAATGTTTGA

Coding sequence (CDS)

ATGTATAGCCAAGCGGTGGATATGTCCCCAGATGACATGGTAGGAACACGTGCAGGTCGATCAAGTGATGGGCGAAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACGTAATGAAACAGTGGAGGTGATCAGGAATGCAATGGACTTTGCAAATGATCAATTGAAGGCAATTGCGGATTGGCCAAAAGAGAATCGTGCAACGGAGGTCAAATTGCGTGTTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGCCGGGATAGGGTAAAGCTTCTACGAATATTATTCAGTAGTGTTGATGACACACAGGGATTCCTGTCGGTCCCAACGGAAATGAAATTGGAGTACTGCAGTATTTTGTTGGAAGAAAATGTTTGA

Protein sequence

MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRILFSSVDDTQGFLSVPTEMKLEYCSILLEENV

Homology

[Close]

BLAST of PI0026994 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.0e-42
Identity = 88/127 (69.29%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 1   MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAI 60
           MYSQ V MSPD+M G RAG++S+ +NCSSGSKRK+G +  ETVEVI++A++F NDQLKAI
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429

Query: 61  ADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRILFSSVDDTQGFLSVPTEMKLE 120
           A+WPKE RATEV+LR EV+KQL DIPEL+SRDR KL++ILF SV+  +GFLS+PTE KLE
Sbjct: 430 ANWPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFRSVEAIEGFLSIPTERKLE 489

Query: 121 YCSILLE 128
           YC+ILL+
Sbjct: 490 YCNILLQ 496

[Close]

BLAST of PI0026994 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.6e-41
Identity = 88/130 (67.69%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 1   MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAI 60
           MYSQ V MSPD+M G RAG++S+ RNCSS SKRKRG +R ETVEVIR+ M+F N+QLKAI
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236

Query: 61  ADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRILFSSVDDTQGFLSVPTEMKLE 120
           ADWPKE RA EV++R +VVKQL DIP+LRS+DR KL++ILF S++  +GFLS+PTE+KLE
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296

Query: 121 YCSILLEENV 131
           YC+ILL+  V
Sbjct: 297 YCNILLQNIV 306

[Close]

BLAST of PI0026994 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.6e-41
Identity = 88/130 (67.69%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 1   MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAI 60
           MYSQ V MSPD+M G RAG++S+ RNCSS SKRKRG +R ETVEVIR+ M+F N+QLKAI
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236

Query: 61  ADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRILFSSVDDTQGFLSVPTEMKLE 120
           ADWPKE RA EV++R +VVKQL DIP+LRS+DR KL++ILF S++  +GFLS+PTE+KLE
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296

Query: 121 YCSILLEENV 131
           YC+ILL+  V
Sbjct: 297 YCNILLQNIV 306

[Close]

BLAST of PI0026994 vs. ExPASy TrEMBL
Match: A0A0A0KFW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 90/130 (69.23%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 1   MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAI 60
           MYSQ +DM PD+M+GTR  +SS+GRNCSSGSKRK GGQ  E V+VI N M+  NDQLKAI
Sbjct: 1   MYSQGLDMPPDEMLGTR--QSSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAI 60

Query: 61  ADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRILFSSVDDTQGFLSVPTEMKLE 120
           A+W KE RATEV+L VEVVKQL DI ELR+RDRVKL++I+F  VDD +GFLS PT++KLE
Sbjct: 61  ANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEGFLSCPTKLKLE 120

Query: 121 YCSILLEENV 131
           YC +LLE+NV
Sbjct: 121 YCRVLLEDNV 128

[Close]

BLAST of PI0026994 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.2e-39
Identity = 86/130 (66.15%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 1   MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAI 60
           +YSQ V MS D++ G RAG++S+ RN SSGSKRKRG +  E VEVI +A +F NDQLK I
Sbjct: 134 IYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTI 193

Query: 61  ADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRILFSSVDDTQGFLSVPTEMKLE 120
            DWPKE RATEV+LR EVVKQL DIP+LRS+DR KL++ILF SV+  +GFLS+PT++KLE
Sbjct: 194 TDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLE 253

Query: 121 YCSILLEENV 131
           YC+ILLE NV
Sbjct: 254 YCNILLENNV 263

[Close]

BLAST of PI0026994 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41
Identity = 88/127 (69.29%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 1   MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAI 60
           MYSQ V MSPD+M G RAG++S+ +NCSSGSKRK+G +  ETVEVI++A++F NDQLKAI
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429

Query: 61  ADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRILFSSVDDTQGFLSVPTEMKLE 120
           A+WPKE RATEV+LR EV+KQL DIPEL+SRDR KL++ILF SV+  +GFLS+PTE KLE
Sbjct: 430 ANWPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFRSVEAIEGFLSIPTERKLE 489

Query: 121 YCSILLE 128
           YC+ILL+
Sbjct: 490 YCNILLQ 496

[Close]

BLAST of PI0026994 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-41
Identity = 88/130 (67.69%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 1   MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAI 60
           MYSQ V MSPD+M G RAG++S+ RNCSS SKRKRG +R ETVEVIR+ M+F N+QLKAI
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236

Query: 61  ADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRILFSSVDDTQGFLSVPTEMKLE 120
           ADWPKE RA EV++R +VVKQL DIP+LRS+DR KL++ILF S++  +GFLS+PTE+KLE
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296

Query: 121 YCSILLEENV 131
           YC+ILL+  V
Sbjct: 297 YCNILLQNIV 306

[Close]

BLAST of PI0026994 vs. NCBI nr
Match: KAE8646815.1 (hypothetical protein Csa_005367, partial [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-40
Identity = 89/129 (68.99%), Postives = 107/129 (82.95%), Query Frame = 0


Query: 1   MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAI 60
           MYSQ +DM PD+M+GTR  +SS+GRNCSSGSKRK GGQ  E V+VI N M+  NDQLKAI
Sbjct: 1   MYSQGLDMPPDEMLGTR--QSSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAI 60

Query: 61  ADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRILFSSVDDTQGFLSVPTEMKLE 120
           A+W KE RATEV+L VEVVKQL DI ELR+RDRVKL++I+F  VDD +GFLS PT++KLE
Sbjct: 61  ANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEGFLSCPTKLKLE 120

Query: 121 YCSILLEEN 130
           YC +LLE+N
Sbjct: 121 YCRVLLEDN 127

[Close]

BLAST of PI0026994 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 170.6 bits (431), Expect = 8.7e-39
Identity = 86/130 (66.15%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 1   MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAI 60
           +YSQ V MS D++ G RAG++S+ RN SSGSKRKRG +  E VEVI +A +F NDQLK I
Sbjct: 134 IYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTI 193

Query: 61  ADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRILFSSVDDTQGFLSVPTEMKLE 120
            DWPKE RATEV+LR EVVKQL DIP+LRS+DR KL++ILF SV+  +GFLS+PT++KLE
Sbjct: 194 TDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLE 253

Query: 121 YCSILLEENV 131
           YC+ILLE NV
Sbjct: 254 YCNILLENNV 263

[Close]

BLAST of PI0026994 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.7 bits (426), Expect = 3.3e-38
Identity = 86/127 (67.72%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 1   MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAI 60
           MYSQ V MS D+M GTRAG++S+ RNCSS SKRK+G Q  ETVEVIR+AM F NDQLKAI
Sbjct: 76  MYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAI 135

Query: 61  ADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRILFSSVDDTQGFLSVPTEMKLE 120
           ADW KE RA +V+LR  VVKQL DIP+L++RDR K+++ILF SV+  +GFLS+PTE+KLE
Sbjct: 136 ADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLE 195

Query: 121 YCSILLE 128
           YC++LLE
Sbjct: 196 YCNVLLE 202

The following BLAST results are available for this feature:

BLAST of PI0026994 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026994 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQU2	7.0e-42	69.29	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U0H7	1.6e-41	67.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	1.6e-41	67.69	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A0A0KFW0	2.0e-41	69.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1	[more]
A0A5D3BZU3	4.2e-39	66.15	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0026994 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033290.1	1.4e-41	69.29	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]
XP_008441954.1	3.2e-41	67.69	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAE8646815.1	1.2e-40	68.99	hypothetical protein Csa_005367, partial [Cucumis sativus]	[more]
KAA0031678.1	8.7e-39	66.15	retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p...	[more]
KAA0042340.1	3.3e-38	67.72	retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p...	[more]

BLAST of PI0026994 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026994.1	PI0026994.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding