PI0026952 (gene) Melon (PI 482460) v1

Overview


Name	PI0026952
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr03: 15458991 .. 15459452 (+)
RNA-Seq Expression	PI0026952
Synteny	PI0026952

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCAACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTTTACATCTTGGCCAGTATGTCTGACGTATTGAGCAAGAAACATGAGTCCATGGTCACTACACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAAGCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGACAATCATTGACGAGCAAAGTTAG

mRNA sequence

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCAACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTTTACATCTTGGCCAGTATGTCTGACGTATTGAGCAAGAAACATGAGTCCATGGTCACTACACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAAGCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGACAATCATTGACGAGCAAAGTTAG

Coding sequence (CDS)

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCAACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTTTACATCTTGGCCAGTATGTCTGACGTATTGAGCAAGAAACATGAGTCCATGGTCACTACACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAAGCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGACAATCATTGACGAGCAAAGTTAG

Protein sequence

MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTTRQIMDSLQEMFGQASIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGTIIDEQS

Homology

[Close]

BLAST of PI0026952 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 121/153 (79.08%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTTRQIMDSLQEMFGQASIQIRHEAIKYVYNA 120
            WTKAN+KA +Y+LAS+SD+LSKKHE MVT RQIMDSL+EMFGQ SIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGTIIDEQS 154
           RMKEGQSVREHVL M+V FNVAE N  I DE+S
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKS 153

[Close]

BLAST of PI0026952 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 121/153 (79.08%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTTRQIMDSLQEMFGQASIQIRHEAIKYVYNA 120
            WTKAN+KA +Y+LAS+SD+LSKKHE MVT RQIMDSL+EMFGQ SIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGTIIDEQS 154
           RMKEGQSVREHVL M+V FNVAE N  I DE+S
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKS 153

[Close]

BLAST of PI0026952 vs. ExPASy TrEMBL
Match: A0A5D3BM47 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00040 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.4e-57
Identity = 117/153 (76.47%), Postives = 133/153 (86.93%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+
Sbjct: 1   MSSSIIALLKKEHLTGENYAMWKSKLNMILVIVDLRFILMEECPPFPTQNASESIRDAYN 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTTRQIMDSLQEMFGQASIQIRHEAIKYVYNA 120
           R TKAN+KA +YILASMSD+LSKKHE MVT RQIMDS +E+F Q SIQI+ EAIKYVYNA
Sbjct: 61  RRTKANDKACLYILASMSDILSKKHEIMVTARQIMDSHKELFRQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGTIIDEQS 154
            MKEGQSVREH LDM+V FNVAE NG +IDE+S
Sbjct: 121 HMKEGQSVREHCLDMIVNFNVAEMNGAVIDEKS 153

[Close]

BLAST of PI0026952 vs. ExPASy TrEMBL
Match: A0A6J1DWL0 (uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024734 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 111/153 (72.55%), Postives = 133/153 (86.93%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MS+SIIALL  +KL G+NY  WKSNLN ILVIDDLRFVL E+CP +PV NA+  VR+AYD
Sbjct: 1   MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTTRQIMDSLQEMFGQASIQIRHEAIKYVYNA 120
           RW K+N+KA+VYILAS+SDVL+KKHE  VTT++IMDSLQ MFGQ S+Q RHEA+K+VYN+
Sbjct: 61  RWIKSNDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNS 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGTIIDEQS 154
           RMKEG SVREHVL++MV FNVAE+NG +IDEQS
Sbjct: 121 RMKEGSSVREHVLNLMVHFNVAESNGIVIDEQS 153

[Close]

BLAST of PI0026952 vs. ExPASy TrEMBL
Match: A0A6J1DWG6 (uncharacterized protein LOC111025021 OS=Momordica charantia OX=3673 GN=LOC111025021 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.4e-56
Identity = 111/153 (72.55%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MS+S I LL ++KL GDNY  WKSNLN ILVIDDLRFVL EECPP+P  NA++TVRDAYD
Sbjct: 7   MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPAPAPNANRTVRDAYD 66

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTTRQIMDSLQEMFGQASIQIRHEAIKYVYNA 120
           RW KANEKARVYILAS+S+VLSKKHE + TTR+IMDSLQ +FGQ S  + H+A+KYVYN 
Sbjct: 67  RWVKANEKARVYILASISEVLSKKHERLATTREIMDSLQALFGQPSTTLMHDAVKYVYNC 126

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGTIIDEQS 154
           RMKEG SVREHVL+MMV FNVAE N T+++E S
Sbjct: 127 RMKEGSSVREHVLNMMVHFNVAEVNDTVMNEIS 159

[Close]

BLAST of PI0026952 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 2.8e-60
Identity = 121/153 (79.08%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTTRQIMDSLQEMFGQASIQIRHEAIKYVYNA 120
            WTKAN+KA +Y+LAS+SD+LSKKHE MVT RQIMDSL+EMFGQ SIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGTIIDEQS 154
           RMKEGQSVREHVL M+V FNVAE N  I DE+S
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKS 153

[Close]

BLAST of PI0026952 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 2.8e-60
Identity = 121/153 (79.08%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTTRQIMDSLQEMFGQASIQIRHEAIKYVYNA 120
            WTKAN+KA +Y+LAS+SD+LSKKHE MVT RQIMDSL+EMFGQ SIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGTIIDEQS 154
           RMKEGQSVREHVL M+V FNVAE N  I DE+S
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKS 153

[Close]

BLAST of PI0026952 vs. NCBI nr
Match: TYK00843.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.5 bits (589), Expect = 4.9e-57
Identity = 117/153 (76.47%), Postives = 133/153 (86.93%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+
Sbjct: 1   MSSSIIALLKKEHLTGENYAMWKSKLNMILVIVDLRFILMEECPPFPTQNASESIRDAYN 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTTRQIMDSLQEMFGQASIQIRHEAIKYVYNA 120
           R TKAN+KA +YILASMSD+LSKKHE MVT RQIMDS +E+F Q SIQI+ EAIKYVYNA
Sbjct: 61  RRTKANDKACLYILASMSDILSKKHEIMVTARQIMDSHKELFRQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGTIIDEQS 154
            MKEGQSVREH LDM+V FNVAE NG +IDE+S
Sbjct: 121 HMKEGQSVREHCLDMIVNFNVAEMNGAVIDEKS 153

[Close]

BLAST of PI0026952 vs. NCBI nr
Match: XP_022158197.1 (uncharacterized protein LOC111024734 [Momordica charantia])

HSP 1 Score: 229.2 bits (583), Expect = 2.4e-56
Identity = 111/153 (72.55%), Postives = 133/153 (86.93%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MS+SIIALL  +KL G+NY  WKSNLN ILVIDDLRFVL E+CP +PV NA+  VR+AYD
Sbjct: 1   MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTTRQIMDSLQEMFGQASIQIRHEAIKYVYNA 120
           RW K+N+KA+VYILAS+SDVL+KKHE  VTT++IMDSLQ MFGQ S+Q RHEA+K+VYN+
Sbjct: 61  RWIKSNDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNS 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGTIIDEQS 154
           RMKEG SVREHVL++MV FNVAE+NG +IDEQS
Sbjct: 121 RMKEGSSVREHVLNLMVHFNVAESNGIVIDEQS 153

[Close]

BLAST of PI0026952 vs. NCBI nr
Match: XP_022158568.1 (uncharacterized protein LOC111025021 [Momordica charantia])

HSP 1 Score: 227.6 bits (579), Expect = 7.1e-56
Identity = 111/153 (72.55%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MS+S I LL ++KL GDNY  WKSNLN ILVIDDLRFVL EECPP+P  NA++TVRDAYD
Sbjct: 7   MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPAPAPNANRTVRDAYD 66

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTTRQIMDSLQEMFGQASIQIRHEAIKYVYNA 120
           RW KANEKARVYILAS+S+VLSKKHE + TTR+IMDSLQ +FGQ S  + H+A+KYVYN 
Sbjct: 67  RWVKANEKARVYILASISEVLSKKHERLATTREIMDSLQALFGQPSTTLMHDAVKYVYNC 126

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGTIIDEQS 154
           RMKEG SVREHVL+MMV FNVAE N T+++E S
Sbjct: 127 RMKEGSSVREHVLNMMVHFNVAEVNDTVMNEIS 159

The following BLAST results are available for this feature:

BLAST of PI0026952 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026952 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0D9	1.3e-60	79.08	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	1.3e-60	79.08	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]
A0A5D3BM47	2.4e-57	76.47	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G0004...	[more]
A0A6J1DWL0	1.2e-56	72.55	uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DWG6	3.4e-56	72.55	uncharacterized protein LOC111025021 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of PI0026952 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063887.1	2.8e-60	79.08	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	2.8e-60	79.08	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK00843.1	4.9e-57	76.47	gag/pol protein [Cucumis melo var. makuwa]	[more]
XP_022158197.1	2.4e-56	72.55	uncharacterized protein LOC111024734 [Momordica charantia]	[more]
XP_022158568.1	7.1e-56	72.55	uncharacterized protein LOC111025021 [Momordica charantia]	[more]

BLAST of PI0026952 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..151 e-value: 1.5E-9 score: 37.8
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..153
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026952.1	PI0026952.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding